Wall clock time and date at job start Tue Mar 31 2020 10:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47231 * 2 1 4 4 O 1.42897 * 109.47091 * 120.00258 * 2 1 3 5 5 C 1.42906 * 113.99962 * 89.99853 * 4 2 1 6 6 H 1.09002 * 112.84931 * 338.30767 * 5 4 2 7 7 C 1.53780 * 113.61217 * 109.50542 * 5 4 2 8 8 C 1.53787 * 87.07919 * 140.06222 * 7 5 4 9 9 H 1.09003 * 113.61167 * 89.20077 * 8 7 5 10 10 N 1.46893 * 113.61370 * 220.01343 * 8 7 5 11 11 C 1.46895 * 111.00566 * 255.49522 * 10 8 7 12 12 C 1.53038 * 109.46417 * 205.00531 * 11 10 8 13 13 C 1.53192 * 109.34054 * 178.63146 * 12 11 10 14 14 N 1.46935 * 108.77544 * 54.61647 * 13 12 11 15 15 C 1.36937 * 120.62533 * 126.37007 * 14 13 12 16 16 H 1.08009 * 119.99440 * 207.67575 * 15 14 13 17 17 C 1.38803 * 120.00530 * 27.68794 * 15 14 13 18 18 N 1.31619 * 120.00080 * 17.36290 * 17 15 14 19 19 Si 1.86797 * 120.00079 * 197.36919 * 17 15 14 20 20 H 1.48501 * 109.47213 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47373 * 119.99468 * 19 17 15 22 22 H 1.48498 * 109.47465 * 239.99698 * 19 17 15 23 23 C 1.46925 * 118.73829 * 306.39519 * 14 13 12 24 24 C 1.53036 * 109.48387 * 84.91473 * 11 10 8 25 25 C 1.53774 * 87.08090 * 334.56681 * 8 7 5 26 26 C 1.53001 * 113.61454 * 139.98015 * 25 8 7 27 27 C 1.53000 * 113.61749 * 270.88067 * 25 8 7 28 28 H 1.08996 * 109.47309 * 300.00163 * 1 2 3 29 29 H 1.09008 * 109.47077 * 60.00084 * 1 2 3 30 30 H 1.08999 * 109.46974 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46818 * 240.00287 * 2 1 3 32 32 H 1.09001 * 109.47141 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47274 * 299.99964 * 3 2 1 34 34 H 1.08994 * 109.46857 * 60.00190 * 3 2 1 35 35 H 1.09000 * 113.61666 * 25.51392 * 7 5 4 36 36 H 1.08994 * 113.61455 * 254.61112 * 7 5 4 37 37 H 1.00901 * 111.00529 * 19.45490 * 10 8 7 38 38 H 1.09004 * 109.44760 * 324.97073 * 11 10 8 39 39 H 1.08994 * 109.49868 * 58.65935 * 12 11 10 40 40 H 1.09006 * 109.49420 * 298.59542 * 12 11 10 41 41 H 1.08999 * 109.59130 * 174.39991 * 13 12 11 42 42 H 1.08995 * 109.58772 * 294.68779 * 13 12 11 43 43 H 0.97006 * 120.00073 * 180.02562 * 18 17 15 44 44 H 1.08993 * 109.58688 * 173.39929 * 23 14 13 45 45 H 1.09013 * 109.58356 * 293.67790 * 23 14 13 46 46 H 1.09000 * 109.47185 * 61.41001 * 24 11 10 47 47 H 1.09003 * 109.52779 * 301.34039 * 24 11 10 48 48 H 1.08993 * 109.47035 * 60.00033 * 26 25 8 49 49 H 1.09002 * 109.47190 * 180.02562 * 26 25 8 50 50 H 1.09004 * 109.46909 * 299.99990 * 26 25 8 51 51 H 1.09000 * 109.46636 * 59.99872 * 27 25 8 52 52 H 1.08994 * 109.47281 * 180.02562 * 27 25 8 53 53 H 1.09002 * 109.46799 * 300.00822 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2000 -2.0783 0.9885 6 1 1.6231 -2.4830 0.1569 7 6 3.6790 -2.4993 0.9749 8 6 3.2554 -3.7279 1.7971 9 1 2.9685 -4.5841 1.1865 10 7 4.2045 -4.0791 2.8618 11 6 4.9983 -5.2584 2.4917 12 6 5.4880 -5.9619 3.7595 13 6 6.2865 -7.2101 3.3709 14 7 7.3588 -6.8167 2.4465 15 6 8.6610 -7.1519 2.7055 16 1 9.4628 -6.5345 2.3280 17 6 8.9506 -8.2850 3.4531 18 7 8.0332 -9.2133 3.6233 19 14 10.6422 -8.4923 4.2177 20 1 11.4855 -7.3175 3.8800 21 1 10.5091 -8.5989 5.6929 22 1 11.2773 -9.7256 3.6877 23 6 7.0073 -6.0566 1.2393 24 6 6.2006 -4.8214 1.6518 25 6 2.0622 -2.8907 2.2869 26 6 0.7555 -3.6813 2.3794 27 6 2.3591 -2.0812 3.5508 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 4.3326 -1.8156 1.5166 36 1 4.0534 -2.7466 -0.0184 37 1 4.8016 -3.2973 3.0864 38 1 4.3807 -5.9441 1.9115 39 1 4.6318 -6.2526 4.3681 40 1 6.1254 -5.2847 4.3281 41 1 6.7207 -7.6590 4.2642 42 1 5.6272 -7.9288 2.8843 43 1 8.2355 -10.0050 4.1461 44 1 7.9168 -5.7445 0.7262 45 1 6.4092 -6.6812 0.5754 46 1 6.8315 -4.1547 2.2398 47 1 5.8520 -4.3000 0.7602 48 1 0.8804 -4.5090 3.0773 49 1 -0.0415 -3.0261 2.7310 50 1 0.4967 -4.0717 1.3951 51 1 3.1815 -1.3928 3.3565 52 1 1.4720 -1.5164 3.8373 53 1 2.6353 -2.7581 4.3593 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613242446.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:30 Heat of formation + Delta-G solvation = -35.041231 kcal Electronic energy + Delta-G solvation = -27313.779223 eV Core-core repulsion = 23799.350368 eV Total energy + Delta-G solvation = -3514.428855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.37158 -39.38733 -38.12763 -35.81017 -33.60705 -33.01886 -31.80440 -31.19397 -30.23514 -28.26606 -28.04956 -26.67219 -24.47703 -23.73440 -23.40906 -22.84425 -22.04932 -20.97913 -19.43642 -18.61360 -17.85380 -16.94123 -16.36739 -16.24970 -15.95774 -15.62841 -15.33199 -15.23874 -15.00181 -14.88063 -14.58362 -14.45864 -14.12566 -13.84203 -13.61998 -13.34602 -13.17260 -13.07209 -13.00316 -12.97701 -12.86478 -12.81258 -12.60134 -12.53506 -12.49843 -12.23430 -12.02436 -11.90508 -11.83859 -11.81920 -11.60679 -11.42535 -11.38830 -11.17240 -10.87039 -10.54002 -10.18102 -9.12935 -8.68452 -7.87619 -5.32454 1.45273 1.47220 1.57702 2.50922 2.74125 3.24512 3.34722 3.56358 3.65818 3.71176 3.85741 3.94688 4.01013 4.07538 4.18634 4.23070 4.34016 4.38422 4.43018 4.45164 4.55223 4.62376 4.71986 4.73766 4.77064 4.85527 4.89724 4.92741 4.94822 4.95631 4.98460 4.99967 5.03740 5.07174 5.15644 5.20235 5.24291 5.28438 5.30639 5.33001 5.35182 5.35726 5.50898 5.54012 5.63331 5.65693 5.75807 6.26991 6.39877 6.47379 6.57182 7.15018 7.86733 8.38123 9.18925 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.029808 B = 0.002658 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.113505 B =10531.996470 C =10932.358017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.071 3.929 3 C -0.147 4.147 4 O -0.377 6.377 5 C 0.077 3.923 6 H 0.094 0.906 7 C -0.180 4.180 8 C 0.077 3.923 9 H 0.095 0.905 10 N -0.665 5.665 11 C 0.110 3.890 12 C -0.110 4.110 13 C 0.178 3.822 14 N -0.610 5.610 15 C -0.262 4.262 16 H 0.064 0.936 17 C -0.052 4.052 18 N -0.935 5.935 19 Si 0.966 3.034 20 H -0.267 1.267 21 H -0.289 1.289 22 H -0.292 1.292 23 C 0.144 3.856 24 C -0.141 4.141 25 C -0.068 4.068 26 C -0.132 4.132 27 C -0.103 4.103 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.343 0.657 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.045 0.955 41 H 0.052 0.948 42 H -0.005 1.005 43 H 0.250 0.750 44 H 0.049 0.951 45 H 0.012 0.988 46 H 0.053 0.947 47 H 0.074 0.926 48 H 0.054 0.946 49 H 0.058 0.942 50 H 0.060 0.940 51 H 0.048 0.952 52 H 0.050 0.950 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.620 19.251 -7.319 26.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 C -0.204 4.204 4 O -0.296 6.296 5 C 0.019 3.981 6 H 0.112 0.888 7 C -0.219 4.219 8 C -0.034 4.034 9 H 0.113 0.887 10 N -0.293 5.293 11 C 0.000 4.000 12 C -0.150 4.150 13 C 0.052 3.948 14 N -0.334 5.334 15 C -0.392 4.392 16 H 0.082 0.918 17 C -0.247 4.247 18 N -0.581 5.581 19 Si 0.794 3.206 20 H -0.192 1.192 21 H -0.216 1.216 22 H -0.219 1.219 23 C 0.018 3.982 24 C -0.182 4.182 25 C -0.069 4.069 26 C -0.189 4.189 27 C -0.161 4.161 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.163 0.837 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.013 0.987 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.030 0.970 46 H 0.072 0.928 47 H 0.092 0.908 48 H 0.073 0.927 49 H 0.077 0.923 50 H 0.079 0.921 51 H 0.067 0.933 52 H 0.069 0.931 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.026 18.856 -6.699 26.274 hybrid contribution 1.570 -0.458 -0.416 1.688 sum -15.456 18.398 -7.115 25.060 Atomic orbital electron populations 1.22281 0.95372 1.02305 1.02814 1.22284 0.94162 0.94136 0.88047 1.21853 1.01368 0.94262 1.02949 1.87980 1.85960 1.19708 1.35976 1.23694 0.95265 0.81232 0.97941 0.88804 1.24171 0.97951 0.98530 1.01295 1.22906 0.93656 0.95413 0.91392 0.88689 1.60445 1.20752 1.07782 1.40320 1.21303 0.92218 0.91850 0.94639 1.21926 0.98477 0.97349 0.97249 1.20585 0.88134 0.92569 0.93540 1.44338 1.03641 1.63915 1.21526 1.19530 0.84493 1.04373 1.30788 0.91782 1.25788 1.01028 0.94801 1.03118 1.70197 1.35605 1.08834 1.43481 0.85226 0.80030 0.77487 0.77819 1.19164 1.21615 1.21856 1.20977 0.96983 0.91898 0.88320 1.22528 0.97757 0.97883 0.99985 1.22241 0.95100 0.94517 0.95019 1.21695 0.95702 0.99603 1.01935 1.21157 1.00763 0.98380 0.95765 0.92480 0.90395 0.92717 0.91934 0.92723 0.89721 0.92378 0.89849 0.91091 0.83727 0.91799 0.91901 0.93597 0.92950 0.98742 0.94107 0.93211 0.96972 0.92836 0.90795 0.92721 0.92290 0.92089 0.93327 0.93067 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 9.53 71.98 0.69 -1.43 16 2 C 0.07 1.05 3.22 30.59 0.10 1.15 16 3 C -0.15 -1.90 9.56 71.98 0.69 -1.21 16 4 O -0.38 -7.36 9.10 -148.98 -1.36 -8.72 16 5 C 0.08 1.41 3.51 31.12 0.11 1.52 16 6 H 0.09 1.49 7.64 -2.39 -0.02 1.47 16 7 C -0.18 -3.55 6.88 31.12 0.21 -3.33 16 8 C 0.08 1.68 3.41 45.44 0.15 1.84 16 9 H 0.10 2.13 7.47 -2.39 -0.02 2.11 16 10 N -0.66 -17.35 5.32 -466.67 -2.48 -19.84 16 11 C 0.11 3.52 2.43 44.94 0.11 3.63 16 12 C -0.11 -4.28 5.69 30.67 0.17 -4.11 16 13 C 0.18 8.81 5.31 86.36 0.46 9.27 16 14 N -0.61 -31.27 3.00 -699.08 -2.09 -33.36 16 15 C -0.26 -14.70 9.58 84.03 0.81 -13.89 16 16 H 0.06 3.52 7.89 -2.91 -0.02 3.50 16 17 C -0.05 -2.97 4.91 84.86 0.42 -2.55 16 18 N -0.93 -56.33 11.19 21.65 0.24 -56.09 16 19 Si 0.97 45.63 29.59 68.60 2.03 47.66 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 23 C 0.14 6.03 6.52 86.36 0.56 6.59 16 24 C -0.14 -4.62 5.33 30.67 0.16 -4.46 16 25 C -0.07 -1.35 1.35 -51.66 -0.07 -1.42 16 26 C -0.13 -2.41 9.20 71.98 0.66 -1.75 16 27 C -0.10 -2.21 7.76 71.98 0.56 -1.65 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.85 7.76 -2.39 -0.02 0.83 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.08 1.78 7.34 -2.39 -0.02 1.77 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.34 8.82 7.80 -89.69 -0.70 8.12 16 38 H 0.06 2.14 7.47 -2.38 -0.02 2.12 16 39 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 41 H 0.05 2.95 6.03 -2.39 -0.01 2.94 16 42 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 43 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 44 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 45 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 46 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.07 2.04 7.74 -2.39 -0.02 2.02 16 48 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.06 0.97 7.94 -2.38 -0.02 0.95 16 51 H 0.05 1.08 7.19 -2.39 -0.02 1.07 16 52 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 53 H 0.06 1.34 7.77 -2.39 -0.02 1.33 16 Total: -1.00 -62.69 402.10 2.27 -60.42 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.14 Total: 21.75 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 5.79 Total: -11.81 kcal Atomic # 7 Polarization: -104.95 SS G_CDS: -4.34 Total: -109.29 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -1.36 Total: -8.72 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -62.69 2.27 -60.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613242446.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.375 kcal (2) G-P(sol) polarization free energy of solvation -62.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds