Wall clock time and date at job start Tue Mar 31 2020 10:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 N 1.46902 * 109.47199 * 119.99995 * 2 1 3 5 5 C 1.46898 * 111.00012 * 167.30413 * 4 2 1 6 6 C 1.50698 * 109.47370 * 293.95299 * 5 4 2 7 7 H 1.08004 * 119.99872 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00441 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99419 * 359.72354 * 8 6 5 10 10 Si 1.86797 * 120.00088 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.47014 * 179.72150 * 10 8 6 12 12 H 1.48507 * 109.46987 * 299.72029 * 10 8 6 13 13 H 1.48499 * 109.47301 * 59.72318 * 10 8 6 14 14 C 1.46904 * 111.00149 * 291.25858 * 4 2 1 15 15 N 1.46499 * 109.47162 * 152.55924 * 14 4 2 16 16 C 1.46754 * 124.35135 * 276.96898 * 15 14 4 17 17 C 1.54663 * 105.38423 * 162.85418 * 16 15 14 18 18 H 1.08993 * 111.22496 * 267.58359 * 17 16 15 19 19 C 1.53001 * 110.82332 * 143.77595 * 17 16 15 20 20 C 1.52994 * 109.47187 * 180.64970 * 19 17 16 21 21 C 1.52998 * 109.47426 * 64.84298 * 20 19 17 22 22 C 1.53004 * 109.47126 * 184.84288 * 20 19 17 23 23 C 1.53002 * 109.47126 * 304.83941 * 20 19 17 24 24 C 1.54635 * 101.67984 * 25.76981 * 17 16 15 25 25 C 1.34418 * 124.34367 * 97.27078 * 15 14 4 26 26 O 1.21281 * 124.94689 * 0.42779 * 25 15 14 27 27 H 1.08998 * 109.47110 * 308.46111 * 1 2 3 28 28 H 1.08998 * 109.47603 * 68.46349 * 1 2 3 29 29 H 1.08999 * 109.46986 * 188.46237 * 1 2 3 30 30 H 1.08995 * 109.47393 * 240.00133 * 2 1 3 31 31 H 1.08999 * 109.47110 * 185.73444 * 3 2 1 32 32 H 1.08998 * 109.46554 * 305.73758 * 3 2 1 33 33 H 1.09001 * 109.46850 * 65.73182 * 3 2 1 34 34 H 1.09009 * 109.47124 * 173.95225 * 5 4 2 35 35 H 1.08999 * 109.47115 * 53.95526 * 5 4 2 36 36 H 0.96998 * 120.00513 * 0.27277 * 9 8 6 37 37 H 1.09006 * 109.47010 * 272.56578 * 14 4 2 38 38 H 1.09001 * 109.47065 * 32.56025 * 14 4 2 39 39 H 1.08998 * 110.24507 * 281.98454 * 16 15 14 40 40 H 1.09006 * 110.24619 * 43.98573 * 16 15 14 41 41 H 1.09000 * 109.46877 * 300.64804 * 19 17 16 42 42 H 1.08999 * 109.46768 * 60.64647 * 19 17 16 43 43 H 1.09000 * 109.47358 * 47.96030 * 21 20 19 44 44 H 1.08997 * 109.47631 * 167.96478 * 21 20 19 45 45 H 1.09007 * 109.47137 * 287.96599 * 21 20 19 46 46 H 1.08996 * 109.46777 * 59.99720 * 22 20 19 47 47 H 1.09003 * 109.46808 * 179.97438 * 22 20 19 48 48 H 1.08997 * 109.46872 * 299.99432 * 22 20 19 49 49 H 1.09009 * 109.46902 * 60.00234 * 23 20 19 50 50 H 1.09003 * 109.47352 * 179.97438 * 23 20 19 51 51 H 1.08996 * 109.47348 * 300.00630 * 23 20 19 52 52 H 1.09005 * 110.48049 * 216.30888 * 24 17 16 53 53 H 1.08998 * 110.48769 * 93.66602 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.4565 -0.9787 1.0923 6 6 3.6894 -1.9730 -0.0158 7 1 2.8537 -2.3539 -0.5841 8 6 4.9695 -2.3965 -0.3044 9 7 5.9877 -1.9285 0.3840 10 14 5.2582 -3.6284 -1.6785 11 1 6.7114 -3.9132 -1.7908 12 1 4.5291 -4.8865 -1.3768 13 1 4.7638 -3.0650 -2.9605 14 6 1.7263 0.0833 2.4119 15 7 1.6012 -0.8250 3.5545 16 6 0.3790 -1.5617 3.8968 17 6 0.8324 -2.6842 4.8593 18 1 1.0584 -3.6020 4.3166 19 6 -0.2232 -2.9349 5.9381 20 6 0.2631 -4.0374 6.8809 21 6 1.5065 -3.5555 7.6309 22 6 -0.8408 -4.3725 7.8860 23 6 0.6096 -5.2869 6.0687 24 6 2.1144 -2.0730 5.4711 25 6 2.5895 -1.0862 4.4274 26 8 3.7002 -0.6010 4.3849 27 1 -0.3633 0.6392 0.8047 28 1 -0.3634 0.3772 -0.9559 29 1 -0.3633 -1.0165 0.1512 30 1 1.8933 -0.5138 -0.8899 31 1 3.1251 1.4442 -0.1027 32 1 1.5952 1.9851 -0.8342 33 1 1.7629 1.9258 0.9369 34 1 3.8155 -1.3937 2.0343 35 1 3.9952 -0.0569 0.8727 36 1 5.8378 -1.2885 1.0973 37 1 2.5359 0.7896 2.5961 38 1 0.7921 0.6286 2.2773 39 1 -0.3332 -0.9015 4.3917 40 1 -0.0655 -1.9926 2.9995 41 1 -0.3881 -2.0187 6.5050 42 1 -1.1566 -3.2443 5.4680 43 1 1.3246 -2.5591 8.0336 44 1 1.7274 -4.2427 8.4476 45 1 2.3536 -3.5212 6.9457 46 1 -1.7266 -4.7158 7.3517 47 1 -0.4945 -5.1583 8.5574 48 1 -1.0876 -3.4824 8.4647 49 1 1.3961 -5.0482 5.3526 50 1 0.9565 -6.0722 6.7404 51 1 -0.2762 -5.6302 5.5344 52 1 2.8651 -2.8463 5.6346 53 1 1.8844 -1.5598 6.4047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787210581.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:22 Heat of formation + Delta-G solvation = -42.935258 kcal Electronic energy + Delta-G solvation = -28026.027525 eV Core-core repulsion = 24511.256359 eV Total energy + Delta-G solvation = -3514.771166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.44811 -38.29709 -37.43278 -35.60886 -33.00490 -32.38965 -30.26801 -28.79507 -27.50158 -27.39945 -26.74505 -26.45497 -25.59409 -23.81450 -22.26067 -20.84007 -19.76397 -18.92545 -18.56521 -16.73807 -16.63238 -15.95262 -15.28998 -15.14765 -14.81459 -14.61374 -14.27083 -14.08092 -13.65776 -13.53361 -13.43113 -13.24779 -12.95281 -12.81804 -12.60484 -12.38168 -12.19665 -12.06033 -11.86027 -11.77240 -11.72554 -11.64387 -11.37610 -11.21280 -11.10239 -10.81785 -10.79914 -10.74512 -10.66316 -10.56633 -10.30964 -10.23023 -10.08390 -9.97435 -9.26180 -8.65210 -8.41932 -8.22146 -7.34042 -6.26457 -3.95570 3.00750 3.45931 3.46792 3.49633 3.68290 4.36022 4.50251 4.57770 4.59346 4.72841 4.80893 4.88609 5.06609 5.19358 5.32517 5.37299 5.41382 5.44672 5.48503 5.51793 5.55744 5.59798 5.61830 5.65466 5.66478 5.71648 5.75245 5.79100 5.83478 5.88131 5.89137 5.92514 5.95249 6.06042 6.11546 6.14505 6.16387 6.19899 6.30113 6.35192 6.41502 6.65687 6.75297 6.86056 7.21559 7.27459 7.56155 7.86266 8.06433 8.39579 8.64365 8.67341 8.96232 9.75546 11.12348 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.012657 B = 0.004178 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.632470 B = 6699.470807 C = 7628.188698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.085 3.915 3 C -0.182 4.182 4 N -0.537 5.537 5 C 0.185 3.815 6 C -0.589 4.589 7 H 0.054 0.946 8 C 0.014 3.986 9 N -0.912 5.912 10 Si 1.070 2.930 11 H -0.284 1.284 12 H -0.289 1.289 13 H -0.289 1.289 14 C 0.285 3.715 15 N -0.603 5.603 16 C 0.113 3.887 17 C -0.101 4.101 18 H 0.096 0.904 19 C -0.096 4.096 20 C -0.068 4.068 21 C -0.159 4.159 22 C -0.140 4.140 23 C -0.147 4.147 24 C -0.150 4.150 25 C 0.513 3.487 26 O -0.530 6.530 27 H 0.043 0.957 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.028 0.972 35 H -0.018 1.018 36 H 0.269 0.731 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.073 0.927 46 H 0.053 0.947 47 H 0.053 0.947 48 H 0.053 0.947 49 H 0.063 0.937 50 H 0.052 0.948 51 H 0.054 0.946 52 H 0.102 0.898 53 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.810 -1.081 11.838 20.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 C -0.241 4.241 4 N -0.263 5.263 5 C 0.060 3.940 6 C -0.628 4.628 7 H 0.072 0.928 8 C -0.190 4.190 9 N -0.548 5.548 10 Si 0.899 3.101 11 H -0.209 1.209 12 H -0.215 1.215 13 H -0.216 1.216 14 C 0.073 3.927 15 N -0.338 5.338 16 C -0.010 4.010 17 C -0.120 4.120 18 H 0.114 0.886 19 C -0.134 4.134 20 C -0.068 4.068 21 C -0.216 4.216 22 C -0.198 4.198 23 C -0.204 4.204 24 C -0.190 4.190 25 C 0.300 3.700 26 O -0.406 6.406 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.000 1.000 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.092 0.908 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.081 0.919 50 H 0.071 0.929 51 H 0.073 0.927 52 H 0.120 0.880 53 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.267 -2.055 10.987 18.922 hybrid contribution -0.821 1.577 0.707 1.913 sum -16.089 -0.478 11.694 19.895 Atomic orbital electron populations 1.21877 0.95933 1.01648 1.00310 1.21568 0.93695 0.91933 0.95213 1.22487 1.02464 0.98385 1.00723 1.62002 1.20679 1.43594 1.00009 1.19861 0.81164 0.95041 0.97948 1.21934 0.95055 1.27371 1.18435 0.92784 1.25787 0.92274 0.99717 1.01234 1.70739 1.32888 1.29978 1.21237 0.83532 0.75990 0.75574 0.75022 1.20894 1.21541 1.21578 1.21738 1.00105 0.87888 0.82923 1.48327 1.12725 1.46050 1.26648 1.22043 0.87271 0.92837 0.98880 1.22297 0.94699 0.98811 0.96204 0.88557 1.21636 0.97644 0.98406 0.95693 1.20514 0.95607 0.95438 0.95230 1.22399 0.98150 1.00691 1.00379 1.21872 0.98068 1.01178 0.98633 1.21978 1.01793 0.96728 0.99892 1.22811 0.98798 0.98889 0.98488 1.21007 0.84140 0.81943 0.82951 1.90740 1.20229 1.54545 1.75112 0.93838 0.92975 0.92125 0.88492 0.92084 0.92874 0.93597 0.95441 1.00036 0.92006 0.92749 0.90542 0.91911 0.90192 0.91618 0.91338 0.92659 0.93139 0.90811 0.92772 0.92807 0.92832 0.91855 0.92904 0.92661 0.88000 0.88053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.07 37.15 0.34 -1.71 16 2 C 0.09 1.60 2.75 -67.71 -0.19 1.41 16 3 C -0.18 -3.14 8.61 37.16 0.32 -2.82 16 4 N -0.54 -11.47 4.52 -231.96 -1.05 -12.52 16 5 C 0.19 4.99 3.77 -4.98 -0.02 4.97 16 6 C -0.59 -17.06 8.33 -34.44 -0.29 -17.34 16 7 H 0.05 1.55 7.21 -52.48 -0.38 1.17 16 8 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 9 N -0.91 -29.14 13.65 55.43 0.76 -28.39 16 10 Si 1.07 26.02 29.90 -169.99 -5.08 20.93 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.28 5.29 4.20 -63.31 -0.27 5.03 16 15 N -0.60 -10.37 3.16 -175.79 -0.56 -10.93 16 16 C 0.11 1.43 6.91 -3.03 -0.02 1.41 16 17 C -0.10 -1.14 2.76 -88.88 -0.25 -1.38 16 18 H 0.10 1.18 6.25 -51.93 -0.32 0.86 16 19 C -0.10 -0.80 3.81 -26.73 -0.10 -0.90 16 20 C -0.07 -0.55 0.80 -154.51 -0.12 -0.68 16 21 C -0.16 -1.38 7.02 37.16 0.26 -1.12 16 22 C -0.14 -1.00 8.44 37.16 0.31 -0.69 16 23 C -0.15 -1.30 7.98 37.16 0.30 -1.00 16 24 C -0.15 -2.00 4.39 -26.74 -0.12 -2.11 16 25 C 0.51 9.69 7.41 -10.86 -0.08 9.61 16 26 O -0.53 -12.68 16.69 5.56 0.09 -12.59 16 27 H 0.04 0.57 6.65 -51.93 -0.35 0.22 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 2.09 6.61 -51.93 -0.34 1.74 16 31 H 0.06 1.22 6.91 -51.93 -0.36 0.87 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.04 0.73 6.35 -51.93 -0.33 0.40 16 34 H 0.03 0.83 6.44 -51.92 -0.33 0.50 16 35 H -0.02 -0.52 6.51 -51.93 -0.34 -0.86 16 36 H 0.27 8.84 7.22 -40.82 -0.29 8.55 16 37 H 0.05 1.14 7.18 -51.93 -0.37 0.77 16 38 H 0.08 1.19 5.70 -51.93 -0.30 0.90 16 39 H 0.06 0.65 7.89 -51.93 -0.41 0.24 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.07 0.52 8.02 -51.93 -0.42 0.10 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.45 7.28 -51.93 -0.38 0.08 16 44 H 0.05 0.41 8.09 -51.93 -0.42 -0.01 16 45 H 0.07 0.72 4.64 -51.93 -0.24 0.48 16 46 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.06 0.64 6.28 -51.92 -0.33 0.31 16 50 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 52 H 0.10 1.37 6.35 -51.93 -0.33 1.04 16 53 H 0.10 1.14 6.28 -51.93 -0.33 0.81 16 LS Contribution 390.29 15.07 5.88 5.88 Total: -1.00 -34.28 390.29 -9.56 -43.84 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -9.59 Total: 0.78 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -0.02 Total: -7.01 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -0.85 Total: -51.83 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.09 Total: -12.59 kcal Atomic # 14 Polarization: 26.02 SS G_CDS: -5.08 Total: 20.93 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.28 -9.56 -43.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787210581.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.907 kcal (2) G-P(sol) polarization free energy of solvation -34.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds