Wall clock time and date at job start Tue Mar 31 2020 10:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 N 1.46902 * 109.47199 * 119.99995 * 2 1 3 5 5 C 1.46898 * 111.00012 * 167.30413 * 4 2 1 6 6 C 1.50698 * 109.47370 * 293.95299 * 5 4 2 7 7 H 1.08004 * 119.99872 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00441 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99419 * 359.72354 * 8 6 5 10 10 Si 1.86797 * 120.00088 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.47014 * 179.72150 * 10 8 6 12 12 H 1.48507 * 109.46987 * 299.72029 * 10 8 6 13 13 H 1.48499 * 109.47301 * 59.72318 * 10 8 6 14 14 C 1.46904 * 111.00149 * 291.25858 * 4 2 1 15 15 N 1.46499 * 109.47162 * 152.55924 * 14 4 2 16 16 C 1.46754 * 124.35135 * 276.96898 * 15 14 4 17 17 C 1.54663 * 105.38423 * 162.85418 * 16 15 14 18 18 H 1.08993 * 111.22496 * 267.58359 * 17 16 15 19 19 C 1.53001 * 110.82332 * 143.77595 * 17 16 15 20 20 C 1.52994 * 109.47187 * 180.64970 * 19 17 16 21 21 C 1.52998 * 109.47426 * 64.84298 * 20 19 17 22 22 C 1.53004 * 109.47126 * 184.84288 * 20 19 17 23 23 C 1.53002 * 109.47126 * 304.83941 * 20 19 17 24 24 C 1.54635 * 101.67984 * 25.76981 * 17 16 15 25 25 C 1.34418 * 124.34367 * 97.27078 * 15 14 4 26 26 O 1.21281 * 124.94689 * 0.42779 * 25 15 14 27 27 H 1.08998 * 109.47110 * 308.46111 * 1 2 3 28 28 H 1.08998 * 109.47603 * 68.46349 * 1 2 3 29 29 H 1.08999 * 109.46986 * 188.46237 * 1 2 3 30 30 H 1.08995 * 109.47393 * 240.00133 * 2 1 3 31 31 H 1.08999 * 109.47110 * 185.73444 * 3 2 1 32 32 H 1.08998 * 109.46554 * 305.73758 * 3 2 1 33 33 H 1.09001 * 109.46850 * 65.73182 * 3 2 1 34 34 H 1.09009 * 109.47124 * 173.95225 * 5 4 2 35 35 H 1.08999 * 109.47115 * 53.95526 * 5 4 2 36 36 H 0.96998 * 120.00513 * 0.27277 * 9 8 6 37 37 H 1.09006 * 109.47010 * 272.56578 * 14 4 2 38 38 H 1.09001 * 109.47065 * 32.56025 * 14 4 2 39 39 H 1.08998 * 110.24507 * 281.98454 * 16 15 14 40 40 H 1.09006 * 110.24619 * 43.98573 * 16 15 14 41 41 H 1.09000 * 109.46877 * 300.64804 * 19 17 16 42 42 H 1.08999 * 109.46768 * 60.64647 * 19 17 16 43 43 H 1.09000 * 109.47358 * 47.96030 * 21 20 19 44 44 H 1.08997 * 109.47631 * 167.96478 * 21 20 19 45 45 H 1.09007 * 109.47137 * 287.96599 * 21 20 19 46 46 H 1.08996 * 109.46777 * 59.99720 * 22 20 19 47 47 H 1.09003 * 109.46808 * 179.97438 * 22 20 19 48 48 H 1.08997 * 109.46872 * 299.99432 * 22 20 19 49 49 H 1.09009 * 109.46902 * 60.00234 * 23 20 19 50 50 H 1.09003 * 109.47352 * 179.97438 * 23 20 19 51 51 H 1.08996 * 109.47348 * 300.00630 * 23 20 19 52 52 H 1.09005 * 110.48049 * 216.30888 * 24 17 16 53 53 H 1.08998 * 110.48769 * 93.66602 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.4565 -0.9787 1.0923 6 6 3.6894 -1.9730 -0.0158 7 1 2.8537 -2.3539 -0.5841 8 6 4.9695 -2.3965 -0.3044 9 7 5.9877 -1.9285 0.3840 10 14 5.2582 -3.6284 -1.6785 11 1 6.7114 -3.9132 -1.7908 12 1 4.5291 -4.8865 -1.3768 13 1 4.7638 -3.0650 -2.9605 14 6 1.7263 0.0833 2.4119 15 7 1.6012 -0.8250 3.5545 16 6 0.3790 -1.5617 3.8968 17 6 0.8324 -2.6842 4.8593 18 1 1.0584 -3.6020 4.3166 19 6 -0.2232 -2.9349 5.9381 20 6 0.2631 -4.0374 6.8809 21 6 1.5065 -3.5555 7.6309 22 6 -0.8408 -4.3725 7.8860 23 6 0.6096 -5.2869 6.0687 24 6 2.1144 -2.0730 5.4711 25 6 2.5895 -1.0862 4.4274 26 8 3.7002 -0.6010 4.3849 27 1 -0.3633 0.6392 0.8047 28 1 -0.3634 0.3772 -0.9559 29 1 -0.3633 -1.0165 0.1512 30 1 1.8933 -0.5138 -0.8899 31 1 3.1251 1.4442 -0.1027 32 1 1.5952 1.9851 -0.8342 33 1 1.7629 1.9258 0.9369 34 1 3.8155 -1.3937 2.0343 35 1 3.9952 -0.0569 0.8727 36 1 5.8378 -1.2885 1.0973 37 1 2.5359 0.7896 2.5961 38 1 0.7921 0.6286 2.2773 39 1 -0.3332 -0.9015 4.3917 40 1 -0.0655 -1.9926 2.9995 41 1 -0.3881 -2.0187 6.5050 42 1 -1.1566 -3.2443 5.4680 43 1 1.3246 -2.5591 8.0336 44 1 1.7274 -4.2427 8.4476 45 1 2.3536 -3.5212 6.9457 46 1 -1.7266 -4.7158 7.3517 47 1 -0.4945 -5.1583 8.5574 48 1 -1.0876 -3.4824 8.4647 49 1 1.3961 -5.0482 5.3526 50 1 0.9565 -6.0722 6.7404 51 1 -0.2762 -5.6302 5.5344 52 1 2.8651 -2.8463 5.6346 53 1 1.8844 -1.5598 6.4047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787210581.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:21 Heat of formation + Delta-G solvation = -65.485862 kcal Electronic energy + Delta-G solvation = -28027.005392 eV Core-core repulsion = 24511.256359 eV Total energy + Delta-G solvation = -3515.749033 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.71339 -39.52295 -38.85915 -36.93076 -35.22960 -33.59747 -31.88241 -29.79889 -28.88674 -28.10581 -28.08348 -27.59527 -26.81427 -25.47015 -24.25991 -21.83684 -21.28005 -20.19131 -19.53052 -18.75419 -18.08993 -17.35229 -16.75246 -16.42070 -16.18704 -15.63253 -15.51037 -15.41242 -15.26068 -14.99180 -14.68023 -14.61375 -14.15247 -14.03446 -13.86343 -13.49188 -13.39040 -13.34404 -13.23286 -12.99676 -12.89640 -12.80461 -12.58715 -12.56265 -12.49346 -12.20514 -12.06357 -11.98903 -11.91271 -11.69748 -11.59178 -11.45488 -11.31393 -11.09556 -10.81827 -10.69853 -10.60145 -9.82207 -9.16594 -8.69772 -6.40756 1.47715 1.52946 1.58080 1.76935 2.12339 2.53777 3.12274 3.21338 3.39368 3.47705 3.73377 3.93416 3.98200 4.04307 4.10331 4.15252 4.20213 4.29861 4.33260 4.42544 4.55686 4.59169 4.64773 4.71058 4.72799 4.73298 4.79663 4.83051 4.86225 4.89614 4.92976 4.97567 5.02149 5.03798 5.12281 5.12740 5.20402 5.23837 5.27582 5.31337 5.37470 5.42083 5.50823 5.57024 5.60950 5.63419 5.76334 5.96003 6.19969 6.37445 6.42065 6.57292 7.19565 7.42299 8.66617 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.012657 B = 0.004178 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.632470 B = 6699.470807 C = 7628.188698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.078 3.922 3 C -0.174 4.174 4 N -0.536 5.536 5 C 0.207 3.793 6 C -0.593 4.593 7 H 0.059 0.941 8 C -0.043 4.043 9 N -0.938 5.938 10 Si 1.123 2.877 11 H -0.286 1.286 12 H -0.268 1.268 13 H -0.264 1.264 14 C 0.287 3.713 15 N -0.606 5.606 16 C 0.109 3.891 17 C -0.089 4.089 18 H 0.083 0.917 19 C -0.087 4.087 20 C -0.066 4.066 21 C -0.162 4.162 22 C -0.137 4.137 23 C -0.148 4.148 24 C -0.136 4.136 25 C 0.491 3.509 26 O -0.597 6.597 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.017 0.983 32 H 0.085 0.915 33 H 0.060 0.940 34 H -0.013 1.013 35 H -0.053 1.053 36 H 0.246 0.754 37 H 0.020 0.980 38 H 0.120 0.880 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.056 0.944 46 H 0.061 0.939 47 H 0.052 0.948 48 H 0.060 0.940 49 H 0.043 0.957 50 H 0.053 0.947 51 H 0.061 0.939 52 H 0.095 0.905 53 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.044 -1.731 11.860 24.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.031 4.031 3 C -0.232 4.232 4 N -0.262 5.262 5 C 0.080 3.920 6 C -0.631 4.631 7 H 0.077 0.923 8 C -0.240 4.240 9 N -0.576 5.576 10 Si 0.943 3.057 11 H -0.212 1.212 12 H -0.193 1.193 13 H -0.189 1.189 14 C 0.075 3.925 15 N -0.339 5.339 16 C -0.012 4.012 17 C -0.108 4.108 18 H 0.101 0.899 19 C -0.125 4.125 20 C -0.066 4.066 21 C -0.219 4.219 22 C -0.194 4.194 23 C -0.205 4.205 24 C -0.176 4.176 25 C 0.280 3.720 26 O -0.478 6.478 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.005 0.995 35 H -0.036 1.036 36 H 0.055 0.945 37 H 0.038 0.962 38 H 0.137 0.863 39 H 0.119 0.881 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.080 0.920 49 H 0.063 0.937 50 H 0.072 0.928 51 H 0.080 0.920 52 H 0.113 0.887 53 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -19.594 -2.705 11.019 22.642 hybrid contribution 0.462 1.819 0.719 2.010 sum -19.132 -0.886 11.739 22.463 Atomic orbital electron populations 1.21759 0.91508 1.02354 1.02689 1.21704 0.96992 0.91820 0.92585 1.22399 0.99771 0.98184 1.02888 1.61996 1.16498 1.45347 1.02351 1.19363 0.84566 0.92844 0.95202 1.22265 0.95251 1.27107 1.18495 0.92323 1.27552 0.92287 1.01096 1.03025 1.70908 1.33877 1.30943 1.21882 0.82891 0.76066 0.73934 0.72812 1.21163 1.19269 1.18896 1.21756 1.00710 0.87799 0.82218 1.48542 1.14119 1.45708 1.25519 1.22398 0.85748 0.93476 0.99598 1.22273 0.94337 0.97577 0.96608 0.89909 1.21619 0.96935 0.99183 0.94727 1.20503 0.95782 0.94951 0.95354 1.22405 0.97894 1.01335 1.00226 1.21830 0.97652 1.01583 0.98316 1.21982 1.01463 0.97328 0.99701 1.22850 0.99629 0.97345 0.97730 1.22107 0.83476 0.82109 0.84264 1.90693 1.23058 1.57103 1.76983 0.91519 0.90489 0.92265 0.91775 0.96361 0.89653 0.92095 0.99537 1.03584 0.94485 0.96231 0.86251 0.88061 0.90073 0.90031 0.89538 0.91865 0.92827 0.92492 0.92043 0.92841 0.92049 0.93750 0.92820 0.91960 0.88687 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 9.07 71.98 0.65 -2.57 16 2 C 0.08 2.88 2.75 44.91 0.12 3.00 16 3 C -0.17 -5.98 8.61 71.98 0.62 -5.36 16 4 N -0.54 -23.43 4.52 -887.80 -4.02 -27.45 16 5 C 0.21 11.92 3.77 85.56 0.32 12.24 16 6 C -0.59 -35.66 8.33 25.60 0.21 -35.45 16 7 H 0.06 3.41 7.21 -2.91 -0.02 3.39 16 8 C -0.04 -2.64 5.46 84.66 0.46 -2.18 16 9 N -0.94 -63.19 13.65 21.45 0.29 -62.89 16 10 Si 1.12 52.75 29.90 68.60 2.05 54.80 16 11 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 12 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 13 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 14 C 0.29 10.74 4.20 170.81 0.72 11.46 16 15 N -0.61 -20.85 3.16 -828.68 -2.62 -23.47 16 16 C 0.11 2.48 6.91 86.90 0.60 3.08 16 17 C -0.09 -1.84 2.76 -9.67 -0.03 -1.87 16 18 H 0.08 1.97 6.25 -2.39 -0.01 1.95 16 19 C -0.09 -1.14 3.81 30.59 0.12 -1.02 16 20 C -0.07 -0.91 0.80 -52.18 -0.04 -0.95 16 21 C -0.16 -2.53 7.02 71.98 0.51 -2.03 16 22 C -0.14 -1.50 8.44 71.98 0.61 -0.89 16 23 C -0.15 -2.40 7.98 71.98 0.57 -1.82 16 24 C -0.14 -3.61 4.39 30.59 0.13 -3.47 16 25 C 0.49 19.43 7.41 87.90 0.65 20.08 16 26 O -0.60 -31.05 16.69 -3.03 -0.05 -31.10 16 27 H 0.07 1.42 6.65 -2.39 -0.02 1.40 16 28 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 2.79 6.61 -2.39 -0.02 2.77 16 31 H 0.02 0.75 6.91 -2.39 -0.02 0.73 16 32 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.06 1.89 6.35 -2.39 -0.02 1.87 16 34 H -0.01 -0.88 6.44 -2.38 -0.02 -0.90 16 35 H -0.05 -3.39 6.51 -2.39 -0.02 -3.40 16 36 H 0.25 17.46 7.22 -92.71 -0.67 16.79 16 37 H 0.02 0.88 7.18 -2.38 -0.02 0.86 16 38 H 0.12 3.41 5.70 -2.39 -0.01 3.40 16 39 H 0.10 1.60 7.89 -2.39 -0.02 1.58 16 40 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.08 0.89 8.02 -2.39 -0.02 0.87 16 42 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.06 0.88 7.28 -2.39 -0.02 0.87 16 44 H 0.05 0.80 8.09 -2.39 -0.02 0.78 16 45 H 0.06 1.09 4.64 -2.38 -0.01 1.08 16 46 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.04 0.88 6.28 -2.38 -0.01 0.87 16 50 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 52 H 0.09 2.69 6.35 -2.38 -0.02 2.67 16 53 H 0.13 2.68 6.28 -2.39 -0.02 2.67 16 Total: -1.00 -83.05 390.29 2.86 -80.20 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.97 Total: 17.68 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 6.23 Total: -7.76 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -6.34 Total: -113.81 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.05 Total: -31.10 kcal Atomic # 14 Polarization: 52.75 SS G_CDS: 2.05 Total: 54.80 kcal Total: -83.05 2.86 -80.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787210581.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.711 kcal (2) G-P(sol) polarization free energy of solvation -83.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds