Wall clock time and date at job start Tue Mar 31 2020 09:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34783 * 119.99624 * 2 1 4 4 O 1.21582 * 119.99742 * 179.97438 * 3 2 1 5 5 N 1.34775 * 119.99947 * 359.97438 * 3 2 1 6 6 C 1.46496 * 119.99642 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.46995 * 180.02562 * 6 5 3 8 8 C 1.52999 * 109.46626 * 299.99666 * 7 6 5 9 9 C 1.52997 * 109.47164 * 59.99963 * 7 6 5 10 10 C 1.50698 * 109.47184 * 180.02562 * 7 6 5 11 11 H 1.08005 * 119.99819 * 359.97438 * 10 7 6 12 12 C 1.37875 * 120.00046 * 180.02562 * 10 7 6 13 13 N 1.31511 * 120.00192 * 359.97438 * 12 10 7 14 14 Si 1.86798 * 119.99979 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.47454 * 59.99696 * 14 12 10 16 16 H 1.48506 * 109.47297 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47261 * 299.99689 * 14 12 10 18 18 C 1.46498 * 120.00358 * 179.97438 * 2 1 3 19 19 C 1.53013 * 109.46774 * 60.00175 * 18 2 1 20 20 C 1.52993 * 109.46026 * 164.04605 * 19 18 2 21 21 C 1.52985 * 109.50965 * 315.99274 * 20 19 18 22 22 C 1.53005 * 109.47516 * 112.93548 * 21 20 19 23 23 C 1.53011 * 109.42835 * 284.04396 * 22 21 20 24 24 C 1.52979 * 109.48513 * 75.95992 * 23 22 21 25 25 C 1.52999 * 109.50496 * 247.06504 * 24 23 22 26 26 H 1.09005 * 109.46991 * 90.00507 * 1 2 3 27 27 H 1.08998 * 109.47096 * 209.99709 * 1 2 3 28 28 H 1.08997 * 109.47605 * 330.00172 * 1 2 3 29 29 H 0.96998 * 120.00166 * 0.02562 * 5 3 2 30 30 H 1.09001 * 109.47464 * 60.00642 * 6 5 3 31 31 H 1.09001 * 109.47459 * 300.00357 * 6 5 3 32 32 H 1.09000 * 109.47160 * 60.00369 * 8 7 6 33 33 H 1.09002 * 109.46719 * 180.02562 * 8 7 6 34 34 H 1.08993 * 109.47839 * 299.99931 * 8 7 6 35 35 H 1.09001 * 109.47375 * 59.99966 * 9 7 6 36 36 H 1.09002 * 109.46777 * 180.02562 * 9 7 6 37 37 H 1.09000 * 109.47140 * 299.99948 * 9 7 6 38 38 H 0.96996 * 120.00505 * 179.97438 * 13 12 10 39 39 H 1.08994 * 109.47069 * 180.02562 * 18 2 1 40 40 H 1.08998 * 109.47649 * 284.03912 * 19 18 2 41 41 H 1.09003 * 109.47527 * 44.05580 * 19 18 2 42 42 H 1.08999 * 109.46624 * 195.97947 * 20 19 18 43 43 H 1.09001 * 109.45731 * 75.99571 * 20 19 18 44 44 H 1.08998 * 109.47012 * 352.93126 * 21 20 19 45 45 H 1.09002 * 109.47037 * 232.93391 * 21 20 19 46 46 H 1.09001 * 109.48209 * 164.05488 * 22 21 20 47 47 H 1.09002 * 109.48294 * 44.03167 * 22 21 20 48 48 H 1.09000 * 109.46797 * 315.95712 * 23 22 21 49 49 H 1.08993 * 109.46407 * 195.96414 * 23 22 21 50 50 H 1.09004 * 109.46777 * 127.05465 * 24 23 22 51 51 H 1.08996 * 109.46264 * 7.06779 * 24 23 22 52 52 H 1.09003 * 109.47174 * 284.01868 * 25 24 23 53 53 H 1.09005 * 109.47704 * 164.01132 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3547 1.1673 0.0005 5 7 1.4649 2.3344 -0.0005 6 6 2.1973 3.6031 -0.0011 7 6 1.2030 4.7661 -0.0010 8 6 0.3230 4.6846 -1.2499 9 6 0.3239 4.6853 1.2486 10 6 1.9564 6.0712 -0.0022 11 1 3.0365 6.0712 -0.0026 12 6 1.2670 7.2652 -0.0018 13 7 -0.0481 7.2652 -0.0008 14 14 2.2010 8.8829 -0.0025 15 1 3.0539 8.9616 -1.2156 16 1 1.2359 10.0117 -0.0025 17 1 3.0556 8.9618 1.2094 18 6 2.1976 -1.2687 0.0006 19 6 1.8279 -2.0715 -1.2485 20 6 2.8562 -3.1840 -1.4621 21 6 4.2645 -2.6261 -1.2480 22 6 4.8800 -3.2600 0.0012 23 6 4.2644 -2.6253 1.2499 24 6 2.8561 -3.1831 1.4645 25 6 1.8279 -2.0706 1.2501 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 0.4949 2.3344 -0.0005 30 1 2.8239 3.6606 -0.8911 31 1 2.8241 3.6613 0.8888 32 1 -0.2219 3.7407 -1.2495 33 1 -0.3850 5.5134 -1.2501 34 1 0.9493 4.7422 -2.1401 35 1 0.9508 4.7432 2.1384 36 1 -0.3847 5.5135 1.2484 37 1 -0.2211 3.7413 1.2490 38 1 -0.5331 8.1051 -0.0001 39 1 3.2691 -1.0694 0.0009 40 1 0.8390 -2.5110 -1.1185 41 1 1.8213 -1.4115 -2.1160 42 1 2.7687 -3.5694 -2.4779 43 1 2.6727 -3.9895 -0.7510 44 1 4.2112 -1.5452 -1.1182 45 1 4.8829 -2.8578 -2.1152 46 1 5.9569 -3.0918 0.0012 47 1 4.6794 -4.3314 0.0015 48 1 4.2111 -1.5445 1.1194 49 1 4.8827 -2.8565 2.1172 50 1 2.7686 -3.5677 2.4806 51 1 2.6726 -3.9890 0.7539 52 1 1.8214 -1.4098 2.1171 53 1 0.8387 -2.5099 1.1206 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838753375.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:43:53 Heat of formation + Delta-G solvation = -36.363318 kcal Electronic energy + Delta-G solvation = -27863.377393 eV Core-core repulsion = 24348.891208 eV Total energy + Delta-G solvation = -3514.486185 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.45548 -38.78092 -36.41480 -35.21151 -33.31987 -32.96999 -31.86358 -30.53645 -27.20489 -26.21048 -26.05367 -25.70074 -25.38026 -24.32688 -21.89122 -20.87955 -20.29849 -18.90275 -18.78852 -17.86739 -16.54658 -15.82014 -15.31717 -15.26071 -14.88785 -14.55832 -14.31962 -14.23669 -13.86452 -13.59580 -13.41892 -13.40953 -12.84564 -12.79155 -12.53934 -12.48430 -12.09164 -11.84033 -11.74448 -11.42421 -11.40189 -11.26446 -11.21388 -11.16418 -10.87888 -10.82119 -10.70779 -10.52120 -10.35419 -10.18112 -9.97509 -9.85764 -9.64019 -9.60168 -9.26383 -8.77200 -8.58582 -8.37356 -8.06968 -5.99826 -4.09699 3.01913 3.31903 3.35879 3.40050 3.66769 4.33813 4.42786 4.58519 4.71993 4.72368 4.89022 4.98991 5.05727 5.09862 5.12015 5.15250 5.26836 5.27013 5.47146 5.54841 5.55609 5.68061 5.73262 5.78634 5.80828 5.86471 5.91923 6.01444 6.03957 6.11735 6.16622 6.17023 6.26798 6.40302 6.41542 6.49032 6.54393 6.75025 6.84851 6.84991 6.97210 7.06118 7.15302 7.33110 7.43447 7.58458 7.71925 8.03624 8.14974 8.40814 8.49012 8.90046 9.09749 9.55898 11.01642 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.026325 B = 0.002962 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.368383 B = 9450.484589 C = 9776.414892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.634 5.634 3 C 0.699 3.301 4 O -0.600 6.600 5 N -0.733 5.733 6 C 0.149 3.851 7 C 0.056 3.944 8 C -0.129 4.129 9 C -0.129 4.129 10 C -0.505 4.505 11 H 0.057 0.943 12 C 0.066 3.934 13 N -0.887 5.887 14 Si 0.894 3.106 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C 0.135 3.865 19 C -0.127 4.127 20 C -0.122 4.122 21 C -0.136 4.136 22 C -0.116 4.116 23 C -0.136 4.136 24 C -0.122 4.122 25 C -0.128 4.128 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.394 0.606 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.004 0.996 33 H 0.085 0.915 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.085 0.915 37 H 0.004 0.996 38 H 0.260 0.740 39 H 0.129 0.871 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.080 0.920 49 H 0.058 0.942 50 H 0.059 0.941 51 H 0.073 0.927 52 H 0.065 0.935 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.357 -21.690 0.089 21.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.372 5.372 3 C 0.400 3.600 4 O -0.479 6.479 5 N -0.388 5.388 6 C 0.026 3.974 7 C 0.056 3.944 8 C -0.187 4.187 9 C -0.187 4.187 10 C -0.544 4.544 11 H 0.075 0.925 12 C -0.135 4.135 13 N -0.526 5.526 14 Si 0.721 3.279 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.203 1.203 18 C 0.032 3.968 19 C -0.166 4.166 20 C -0.160 4.160 21 C -0.173 4.173 22 C -0.154 4.154 23 C -0.173 4.173 24 C -0.160 4.160 25 C -0.167 4.167 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.230 0.770 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.023 0.977 33 H 0.103 0.897 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.104 0.896 37 H 0.023 0.977 38 H 0.070 0.930 39 H 0.146 0.854 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.099 0.901 49 H 0.077 0.923 50 H 0.078 0.922 51 H 0.091 0.909 52 H 0.084 0.916 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.082 -21.488 0.089 21.516 hybrid contribution -0.222 0.916 -0.005 0.943 sum 0.859 -20.572 0.084 20.590 Atomic orbital electron populations 1.21643 0.80752 1.02665 1.01422 1.47121 1.05868 1.04939 1.79272 1.16032 0.85430 0.80528 0.77967 1.90843 1.11708 1.86327 1.59063 1.45647 1.10074 1.05103 1.78007 1.21574 0.94991 0.80549 1.00267 1.18351 0.91948 0.91377 0.92756 1.21811 1.00229 0.98999 0.97628 1.21813 1.00227 0.98982 0.97638 1.20959 0.92877 0.89753 1.50813 0.92459 1.24873 0.94870 0.98930 0.94814 1.69792 1.05777 1.26357 1.50641 0.86633 0.79574 0.82948 0.78695 1.20276 1.21362 1.20273 1.21606 0.99879 0.81729 0.93631 1.21989 0.98843 0.97486 0.98271 1.21802 0.94615 0.98115 1.01453 1.21891 0.95819 1.01923 0.97669 1.21681 0.99644 0.99405 0.94636 1.21891 0.95812 1.01926 0.97678 1.21797 0.94604 0.98094 1.01459 1.21998 0.98854 0.97566 0.98271 0.93020 0.91232 0.91517 0.76996 0.93019 0.93039 0.97664 0.89659 0.95472 0.95465 0.89644 0.97713 0.92986 0.85436 0.92037 0.91657 0.92253 0.90899 0.90134 0.92336 0.92248 0.92097 0.90128 0.92332 0.92240 0.90884 0.91617 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 9.57 59.85 0.57 1.45 16 2 N -0.63 -9.00 2.76 -179.66 -0.50 -9.50 16 3 C 0.70 13.01 8.28 -86.91 -0.72 12.29 16 4 O -0.60 -13.17 15.67 5.29 0.08 -13.08 16 5 N -0.73 -13.78 4.82 -65.22 -0.31 -14.09 16 6 C 0.15 3.29 4.50 -4.04 -0.02 3.27 16 7 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 8 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 9 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 10 C -0.51 -13.40 8.01 -34.44 -0.28 -13.68 16 11 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 12 C 0.07 1.76 5.15 -17.82 -0.09 1.66 16 13 N -0.89 -23.77 9.35 55.43 0.52 -23.25 16 14 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 C 0.13 1.65 1.93 -67.92 -0.13 1.52 16 19 C -0.13 -1.31 4.80 -26.73 -0.13 -1.44 16 20 C -0.12 -1.08 5.48 -26.74 -0.15 -1.23 16 21 C -0.14 -1.36 5.47 -26.74 -0.15 -1.50 16 22 C -0.12 -1.05 5.59 -26.72 -0.15 -1.20 16 23 C -0.14 -1.35 5.47 -26.74 -0.15 -1.50 16 24 C -0.12 -1.07 5.48 -26.74 -0.15 -1.22 16 25 C -0.13 -1.31 4.61 -26.73 -0.12 -1.43 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.61 6.80 -51.93 -0.35 0.26 16 28 H 0.07 0.75 6.36 -51.93 -0.33 0.42 16 29 H 0.39 6.73 3.89 -40.82 -0.16 6.57 16 30 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 33 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 37 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 38 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 39 H 0.13 1.82 1.58 -51.93 -0.08 1.74 16 40 H 0.06 0.55 7.82 -51.93 -0.41 0.14 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.57 4.69 -51.93 -0.24 0.33 16 44 H 0.08 1.03 5.47 -51.93 -0.28 0.75 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.47 7.47 -51.93 -0.39 0.08 16 48 H 0.08 1.03 5.47 -51.93 -0.28 0.74 16 49 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.07 0.57 4.69 -51.93 -0.24 0.33 16 52 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 53 H 0.06 0.54 7.08 -51.93 -0.37 0.17 16 LS Contribution 375.42 15.07 5.66 5.66 Total: -1.00 -28.70 375.42 -9.80 -38.50 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -9.10 Total: 6.97 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -1.13 Total: -7.05 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.29 Total: -46.84 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.08 Total: -13.08 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.70 -9.80 -38.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838753375.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.134 kcal (2) G-P(sol) polarization free energy of solvation -28.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds