Wall clock time and date at job start Tue Mar 31 2020 09:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34783 * 119.99624 * 2 1 4 4 O 1.21582 * 119.99742 * 179.97438 * 3 2 1 5 5 N 1.34775 * 119.99947 * 359.97438 * 3 2 1 6 6 C 1.46496 * 119.99642 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.46995 * 180.02562 * 6 5 3 8 8 C 1.52999 * 109.46626 * 299.99666 * 7 6 5 9 9 C 1.52997 * 109.47164 * 59.99963 * 7 6 5 10 10 C 1.50698 * 109.47184 * 180.02562 * 7 6 5 11 11 H 1.08005 * 119.99819 * 359.97438 * 10 7 6 12 12 C 1.37875 * 120.00046 * 180.02562 * 10 7 6 13 13 N 1.31511 * 120.00192 * 359.97438 * 12 10 7 14 14 Si 1.86798 * 119.99979 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.47454 * 59.99696 * 14 12 10 16 16 H 1.48506 * 109.47297 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47261 * 299.99689 * 14 12 10 18 18 C 1.46498 * 120.00358 * 179.97438 * 2 1 3 19 19 C 1.53013 * 109.46774 * 60.00175 * 18 2 1 20 20 C 1.52993 * 109.46026 * 164.04605 * 19 18 2 21 21 C 1.52985 * 109.50965 * 315.99274 * 20 19 18 22 22 C 1.53005 * 109.47516 * 112.93548 * 21 20 19 23 23 C 1.53011 * 109.42835 * 284.04396 * 22 21 20 24 24 C 1.52979 * 109.48513 * 75.95992 * 23 22 21 25 25 C 1.52999 * 109.50496 * 247.06504 * 24 23 22 26 26 H 1.09005 * 109.46991 * 90.00507 * 1 2 3 27 27 H 1.08998 * 109.47096 * 209.99709 * 1 2 3 28 28 H 1.08997 * 109.47605 * 330.00172 * 1 2 3 29 29 H 0.96998 * 120.00166 * 0.02562 * 5 3 2 30 30 H 1.09001 * 109.47464 * 60.00642 * 6 5 3 31 31 H 1.09001 * 109.47459 * 300.00357 * 6 5 3 32 32 H 1.09000 * 109.47160 * 60.00369 * 8 7 6 33 33 H 1.09002 * 109.46719 * 180.02562 * 8 7 6 34 34 H 1.08993 * 109.47839 * 299.99931 * 8 7 6 35 35 H 1.09001 * 109.47375 * 59.99966 * 9 7 6 36 36 H 1.09002 * 109.46777 * 180.02562 * 9 7 6 37 37 H 1.09000 * 109.47140 * 299.99948 * 9 7 6 38 38 H 0.96996 * 120.00505 * 179.97438 * 13 12 10 39 39 H 1.08994 * 109.47069 * 180.02562 * 18 2 1 40 40 H 1.08998 * 109.47649 * 284.03912 * 19 18 2 41 41 H 1.09003 * 109.47527 * 44.05580 * 19 18 2 42 42 H 1.08999 * 109.46624 * 195.97947 * 20 19 18 43 43 H 1.09001 * 109.45731 * 75.99571 * 20 19 18 44 44 H 1.08998 * 109.47012 * 352.93126 * 21 20 19 45 45 H 1.09002 * 109.47037 * 232.93391 * 21 20 19 46 46 H 1.09001 * 109.48209 * 164.05488 * 22 21 20 47 47 H 1.09002 * 109.48294 * 44.03167 * 22 21 20 48 48 H 1.09000 * 109.46797 * 315.95712 * 23 22 21 49 49 H 1.08993 * 109.46407 * 195.96414 * 23 22 21 50 50 H 1.09004 * 109.46777 * 127.05465 * 24 23 22 51 51 H 1.08996 * 109.46264 * 7.06779 * 24 23 22 52 52 H 1.09003 * 109.47174 * 284.01868 * 25 24 23 53 53 H 1.09005 * 109.47704 * 164.01132 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3547 1.1673 0.0005 5 7 1.4649 2.3344 -0.0005 6 6 2.1973 3.6031 -0.0011 7 6 1.2030 4.7661 -0.0010 8 6 0.3230 4.6846 -1.2499 9 6 0.3239 4.6853 1.2486 10 6 1.9564 6.0712 -0.0022 11 1 3.0365 6.0712 -0.0026 12 6 1.2670 7.2652 -0.0018 13 7 -0.0481 7.2652 -0.0008 14 14 2.2010 8.8829 -0.0025 15 1 3.0539 8.9616 -1.2156 16 1 1.2359 10.0117 -0.0025 17 1 3.0556 8.9618 1.2094 18 6 2.1976 -1.2687 0.0006 19 6 1.8279 -2.0715 -1.2485 20 6 2.8562 -3.1840 -1.4621 21 6 4.2645 -2.6261 -1.2480 22 6 4.8800 -3.2600 0.0012 23 6 4.2644 -2.6253 1.2499 24 6 2.8561 -3.1831 1.4645 25 6 1.8279 -2.0706 1.2501 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 0.4949 2.3344 -0.0005 30 1 2.8239 3.6606 -0.8911 31 1 2.8241 3.6613 0.8888 32 1 -0.2219 3.7407 -1.2495 33 1 -0.3850 5.5134 -1.2501 34 1 0.9493 4.7422 -2.1401 35 1 0.9508 4.7432 2.1384 36 1 -0.3847 5.5135 1.2484 37 1 -0.2211 3.7413 1.2490 38 1 -0.5331 8.1051 -0.0001 39 1 3.2691 -1.0694 0.0009 40 1 0.8390 -2.5110 -1.1185 41 1 1.8213 -1.4115 -2.1160 42 1 2.7687 -3.5694 -2.4779 43 1 2.6727 -3.9895 -0.7510 44 1 4.2112 -1.5452 -1.1182 45 1 4.8829 -2.8578 -2.1152 46 1 5.9569 -3.0918 0.0012 47 1 4.6794 -4.3314 0.0015 48 1 4.2111 -1.5445 1.1194 49 1 4.8827 -2.8565 2.1172 50 1 2.7686 -3.5677 2.4806 51 1 2.6726 -3.9890 0.7539 52 1 1.8214 -1.4098 2.1171 53 1 0.8387 -2.5099 1.1206 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838753375.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:43:52 Heat of formation + Delta-G solvation = -50.657961 kcal Electronic energy + Delta-G solvation = -27863.997255 eV Core-core repulsion = 24348.891208 eV Total energy + Delta-G solvation = -3515.106047 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.62150 -39.94490 -38.14273 -36.41810 -35.01018 -33.72039 -33.14377 -32.11575 -28.13017 -27.62814 -27.58043 -27.19562 -26.85958 -25.81979 -22.76023 -21.63373 -21.59080 -20.62387 -19.87660 -19.21613 -17.86753 -17.58001 -16.67066 -16.65201 -16.25521 -15.90626 -15.13248 -15.05065 -15.02158 -14.98246 -14.91433 -14.60202 -14.14665 -14.07307 -14.02604 -13.59603 -13.26791 -13.20003 -13.09010 -12.70521 -12.68576 -12.63205 -12.52459 -12.26707 -12.18696 -12.13972 -12.13186 -11.96054 -11.68332 -11.49723 -11.32705 -11.28496 -11.04597 -10.80220 -10.72232 -10.59134 -10.40166 -10.06050 -9.37931 -8.02578 -6.18398 1.44310 1.44952 1.51852 1.76731 2.20518 2.45883 3.12971 3.20887 3.67244 3.93019 3.94488 4.12980 4.19463 4.23349 4.30002 4.35553 4.36544 4.40631 4.43883 4.51619 4.62430 4.69191 4.74236 4.81412 4.86059 4.95459 4.98770 4.99175 5.03866 5.04232 5.09436 5.13669 5.15823 5.18468 5.24300 5.24878 5.33453 5.36940 5.38967 5.45841 5.61493 5.63964 5.65892 5.66529 5.68068 5.74816 6.05651 6.13680 6.20636 6.43175 6.85231 7.06845 7.49195 7.64039 8.96452 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.026325 B = 0.002962 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.368383 B = 9450.484589 C = 9776.414892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.626 5.626 3 C 0.692 3.308 4 O -0.641 6.641 5 N -0.727 5.727 6 C 0.168 3.832 7 C 0.053 3.947 8 C -0.118 4.118 9 C -0.118 4.118 10 C -0.531 4.531 11 H 0.044 0.956 12 C 0.030 3.970 13 N -0.899 5.899 14 Si 0.946 3.054 15 H -0.277 1.277 16 H -0.281 1.281 17 H -0.277 1.277 18 C 0.125 3.875 19 C -0.120 4.120 20 C -0.117 4.117 21 C -0.136 4.136 22 C -0.112 4.112 23 C -0.136 4.136 24 C -0.116 4.116 25 C -0.122 4.122 26 H 0.064 0.936 27 H 0.099 0.901 28 H 0.064 0.936 29 H 0.403 0.597 30 H 0.032 0.968 31 H 0.032 0.968 32 H 0.034 0.966 33 H 0.064 0.936 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.064 0.936 37 H 0.033 0.967 38 H 0.261 0.739 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.044 0.956 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.045 0.955 45 H 0.062 0.938 46 H 0.054 0.946 47 H 0.084 0.916 48 H 0.045 0.955 49 H 0.062 0.938 50 H 0.071 0.929 51 H 0.092 0.908 52 H 0.046 0.954 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.089 -24.244 0.119 24.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.362 5.362 3 C 0.394 3.606 4 O -0.524 6.524 5 N -0.384 5.384 6 C 0.043 3.957 7 C 0.052 3.948 8 C -0.175 4.175 9 C -0.175 4.175 10 C -0.570 4.570 11 H 0.062 0.938 12 C -0.170 4.170 13 N -0.538 5.538 14 Si 0.772 3.228 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.203 1.203 18 C 0.022 3.978 19 C -0.159 4.159 20 C -0.154 4.154 21 C -0.173 4.173 22 C -0.150 4.150 23 C -0.173 4.173 24 C -0.154 4.154 25 C -0.160 4.160 26 H 0.083 0.917 27 H 0.118 0.882 28 H 0.083 0.917 29 H 0.242 0.758 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.035 0.965 35 H 0.036 0.964 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.122 0.878 40 H 0.103 0.897 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.102 0.898 48 H 0.064 0.936 49 H 0.081 0.919 50 H 0.090 0.910 51 H 0.110 0.890 52 H 0.065 0.935 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.409 -24.084 0.118 24.088 hybrid contribution 0.250 1.675 -0.016 1.694 sum -0.159 -22.409 0.103 22.410 Atomic orbital electron populations 1.21914 0.78392 1.04091 1.02725 1.47211 1.07363 1.04047 1.77582 1.16240 0.85060 0.81493 0.77851 1.90816 1.13729 1.87054 1.60777 1.45357 1.10281 1.04280 1.78481 1.21107 0.94413 0.81762 0.98427 1.18344 0.92183 0.90747 0.93490 1.21642 0.99519 0.99652 0.96723 1.21644 0.99517 0.99658 0.96723 1.21243 0.92626 0.91599 1.51520 0.93810 1.25442 0.95664 1.01345 0.94579 1.69890 1.06422 1.26896 1.50552 0.85812 0.78583 0.79938 0.78447 1.20275 1.20655 1.20258 1.21837 0.98764 0.81260 0.95893 1.21937 1.00490 0.97289 0.96178 1.21797 0.93001 0.97866 1.02737 1.21858 0.97217 0.99885 0.98355 1.21672 0.99258 1.00440 0.93605 1.21858 0.97231 0.99890 0.98346 1.21793 0.92980 0.97845 1.02759 1.21951 1.00538 0.97366 0.96161 0.91707 0.88235 0.91729 0.75809 0.94939 0.94937 0.94752 0.91711 0.96467 0.96439 0.91701 0.94763 0.92946 0.87760 0.89692 0.93665 0.91071 0.88999 0.93616 0.91966 0.92718 0.89784 0.93606 0.91945 0.91009 0.89019 0.93523 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.38 9.57 127.77 1.22 2.60 16 2 N -0.63 -17.23 2.76 -840.59 -2.32 -19.55 16 3 C 0.69 26.16 8.28 179.05 1.48 27.64 16 4 O -0.64 -29.51 15.67 -3.97 -0.06 -29.57 16 5 N -0.73 -27.38 4.82 -478.53 -2.31 -29.68 16 6 C 0.17 7.59 4.50 86.38 0.39 7.98 16 7 C 0.05 2.53 0.50 -52.93 -0.03 2.51 16 8 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 9 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 10 C -0.53 -28.79 8.01 25.60 0.21 -28.59 16 11 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 12 C 0.03 1.58 5.15 84.65 0.44 2.01 16 13 N -0.90 -48.33 9.35 21.45 0.20 -48.13 16 14 Si 0.95 43.12 29.54 68.60 2.03 45.15 16 15 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 16 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 18 C 0.12 2.94 1.93 45.00 0.09 3.02 16 19 C -0.12 -2.21 4.80 30.60 0.15 -2.07 16 20 C -0.12 -1.76 5.48 30.59 0.17 -1.60 16 21 C -0.14 -2.63 5.47 30.59 0.17 -2.47 16 22 C -0.11 -1.89 5.59 30.60 0.17 -1.72 16 23 C -0.14 -2.62 5.47 30.59 0.17 -2.46 16 24 C -0.12 -1.74 5.48 30.59 0.17 -1.57 16 25 C -0.12 -2.20 4.61 30.60 0.14 -2.06 16 26 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.10 1.35 6.80 -2.39 -0.02 1.34 16 28 H 0.06 1.30 6.36 -2.39 -0.02 1.28 16 29 H 0.40 13.29 3.89 -92.71 -0.36 12.93 16 30 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.03 1.32 6.86 -2.39 -0.02 1.30 16 33 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 34 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 37 H 0.03 1.31 6.86 -2.39 -0.02 1.29 16 38 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 39 H 0.11 3.08 1.58 -2.39 0.00 3.08 16 40 H 0.08 1.17 7.82 -2.39 -0.02 1.15 16 41 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.09 1.05 4.69 -2.39 -0.01 1.04 16 44 H 0.05 1.23 5.47 -2.39 -0.01 1.22 16 45 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.08 1.04 7.47 -2.39 -0.02 1.03 16 48 H 0.05 1.23 5.47 -2.39 -0.01 1.22 16 49 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.09 1.04 4.69 -2.39 -0.01 1.03 16 52 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 53 H 0.09 1.14 7.08 -2.38 -0.02 1.13 16 Total: -1.00 -64.37 375.42 4.16 -60.21 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: 0.53 Total: 27.89 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 6.09 Total: -6.31 kcal Atomic # 7 Polarization: -92.93 SS G_CDS: -4.43 Total: -97.36 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.06 Total: -29.57 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -64.37 4.16 -60.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838753375.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.556 kcal (2) G-P(sol) polarization free energy of solvation -64.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds