Wall clock time and date at job start Tue Mar 31 2020 10:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46838 * 2 1 4 4 H 1.09001 * 109.46973 * 174.84718 * 3 2 1 5 5 C 1.52999 * 109.47108 * 294.84069 * 3 2 1 6 6 C 1.50700 * 109.47447 * 293.53089 * 5 3 2 7 7 O 1.21289 * 119.99608 * 353.80558 * 6 5 3 8 8 N 1.34775 * 120.00383 * 173.80527 * 6 5 3 9 9 C 1.47490 * 127.03569 * 179.97438 * 8 6 5 10 10 C 1.53997 * 107.08295 * 154.52046 * 9 8 6 11 11 H 1.08993 * 110.32781 * 120.20026 * 10 9 8 12 12 C 1.52999 * 110.32653 * 242.31302 * 10 9 8 13 13 N 1.46504 * 109.47212 * 293.54667 * 12 10 9 14 14 C 1.36938 * 120.00082 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99977 * 359.97438 * 14 13 12 16 16 C 1.38810 * 119.99557 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00524 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99778 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46801 * 60.00162 * 18 16 14 20 20 H 1.48497 * 109.46972 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47195 * 300.00255 * 18 16 14 22 22 C 1.54615 * 105.04488 * 1.30524 * 10 9 8 23 23 H 1.09001 * 110.74153 * 263.51313 * 22 10 9 24 24 C 1.53008 * 110.74006 * 140.36827 * 22 10 9 25 25 C 1.48113 * 127.03170 * 359.68950 * 8 6 5 26 26 C 1.52998 * 109.47372 * 54.84289 * 3 2 1 27 27 C 1.52999 * 109.46829 * 59.99700 * 26 3 2 28 28 C 1.52992 * 109.47113 * 179.97438 * 26 3 2 29 29 H 1.08997 * 109.47222 * 62.11465 * 1 2 3 30 30 H 1.09007 * 109.46688 * 182.11440 * 1 2 3 31 31 H 1.09001 * 109.47060 * 302.10949 * 1 2 3 32 32 H 1.08999 * 109.46868 * 240.00144 * 2 1 3 33 33 H 1.09003 * 109.47332 * 120.00317 * 2 1 3 34 34 H 1.09000 * 109.47042 * 53.52772 * 5 3 2 35 35 H 1.08998 * 109.47074 * 173.52980 * 5 3 2 36 36 H 1.08998 * 109.91146 * 273.88049 * 9 8 6 37 37 H 1.08996 * 109.90959 * 35.15761 * 9 8 6 38 38 H 1.09003 * 109.47564 * 53.54736 * 12 10 9 39 39 H 1.09005 * 109.47154 * 173.54699 * 12 10 9 40 40 H 0.97005 * 119.99403 * 359.97438 * 13 12 10 41 41 H 0.96993 * 120.00117 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.46773 * 60.00171 * 24 22 10 43 43 H 1.08996 * 109.47018 * 179.97438 * 24 22 10 44 44 H 1.08995 * 109.47230 * 300.00098 * 24 22 10 45 45 H 1.09000 * 110.66147 * 337.76631 * 25 8 6 46 46 H 1.09002 * 110.66535 * 100.88297 * 25 8 6 47 47 H 1.09006 * 109.46721 * 300.00054 * 26 3 2 48 48 H 1.08998 * 109.47512 * 60.00535 * 27 26 3 49 49 H 1.09000 * 109.46771 * 180.02562 * 27 26 3 50 50 H 1.08997 * 109.47458 * 300.00033 * 27 26 3 51 51 H 1.08996 * 109.47449 * 59.99794 * 28 26 3 52 52 H 1.09000 * 109.47049 * 179.97438 * 28 26 3 53 53 H 1.09006 * 109.47413 * 299.99682 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1260 1.4439 0.0923 5 6 1.6386 2.1253 -1.3090 6 6 2.3682 1.4778 -2.4577 7 8 3.2162 0.6381 -2.2412 8 7 2.0784 1.8317 -3.7255 9 6 2.6922 1.3027 -4.9578 10 6 1.6635 1.4842 -6.0894 11 1 2.0745 2.1156 -6.8770 12 6 1.2544 0.1244 -6.6589 13 7 2.4033 -0.4904 -7.3286 14 6 2.2749 -1.7194 -7.9185 15 1 1.3268 -2.2358 -7.8898 16 6 3.3634 -2.3015 -8.5535 17 7 4.5190 -1.6724 -8.5881 18 14 3.1886 -3.9785 -9.3577 19 1 2.1484 -3.9141 -10.4155 20 1 4.4854 -4.3749 -9.9628 21 1 2.7926 -4.9793 -8.3345 22 6 0.4521 2.1765 -5.4233 23 1 -0.3041 1.4438 -5.1412 24 6 -0.1437 3.2371 -6.3514 25 6 1.0743 2.8273 -4.1663 26 6 1.4268 2.2002 1.1793 27 6 1.8282 1.5173 2.4883 28 6 1.9373 3.6425 1.1796 29 1 -0.3633 0.4806 -0.9083 30 1 -0.3633 -1.0271 0.0379 31 1 -0.3633 0.5463 0.8705 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 0.5636 2.0229 -1.4575 35 1 1.8998 3.1825 -1.2624 36 1 3.6003 1.8594 -5.1888 37 1 2.9237 0.2450 -4.8327 38 1 0.9173 -0.5224 -5.8488 39 1 0.4451 0.2596 -7.3766 40 1 3.2548 -0.0263 -7.3547 41 1 5.2795 -2.0791 -9.0320 42 1 -0.4731 2.7658 -7.2775 43 1 -0.9949 3.7108 -5.8625 44 1 0.6122 3.9897 -6.5756 45 1 0.3172 2.9767 -3.3966 46 1 1.5554 3.7713 -4.4224 47 1 0.3407 2.1988 1.0869 48 1 2.9143 1.5188 2.5808 49 1 1.3910 2.0569 3.3284 50 1 1.4649 0.4897 2.4883 51 1 1.6517 4.1292 0.2471 52 1 1.5001 4.1824 2.0195 53 1 3.0234 3.6436 1.2723 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106896517.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:23 Heat of formation + Delta-G solvation = -54.174700 kcal Electronic energy + Delta-G solvation = -27141.113138 eV Core-core repulsion = 23625.854594 eV Total energy + Delta-G solvation = -3515.258544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.26714 -38.68956 -37.18248 -34.59811 -32.81025 -32.56962 -31.41369 -30.42784 -28.85168 -27.18231 -26.40408 -25.87522 -24.47637 -23.15324 -22.40535 -21.11632 -19.87277 -19.27591 -18.66311 -17.23081 -16.72724 -16.14278 -15.93687 -15.18307 -15.02097 -14.71574 -14.36494 -14.12501 -13.79148 -13.59108 -13.45317 -13.18810 -12.92768 -12.80511 -12.71328 -12.56335 -12.50861 -12.35642 -12.00454 -11.89262 -11.74642 -11.69438 -11.48611 -11.38071 -11.06725 -11.00859 -10.83686 -10.61799 -10.53810 -10.47131 -10.39043 -10.33202 -10.29128 -9.97659 -9.63520 -9.52483 -8.84380 -8.47401 -6.89334 -5.72727 -3.01651 2.81550 3.10834 3.47101 3.51229 3.52422 4.40764 4.54371 4.56506 4.63650 4.64325 4.75489 4.85613 4.91068 5.06735 5.16259 5.23473 5.29684 5.35324 5.37393 5.39942 5.44067 5.46694 5.50433 5.51231 5.54283 5.62162 5.63871 5.71248 5.74608 5.80986 5.84117 5.87813 5.92067 6.01015 6.02566 6.08739 6.10710 6.17582 6.20871 6.23159 6.33837 6.35581 6.46387 6.48330 6.52317 6.74918 6.89975 7.72601 7.73814 8.36462 8.45880 9.56973 10.14025 10.48666 11.50074 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.015692 B = 0.003109 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.952309 B = 9003.682019 C = 9965.679487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.125 4.125 3 C -0.066 4.066 4 H 0.079 0.921 5 C -0.136 4.136 6 C 0.527 3.473 7 O -0.535 6.535 8 N -0.622 5.622 9 C 0.111 3.889 10 C -0.102 4.102 11 H 0.085 0.915 12 C 0.163 3.837 13 N -0.732 5.732 14 C -0.240 4.240 15 H 0.069 0.931 16 C -0.013 4.013 17 N -0.933 5.933 18 Si 0.907 3.093 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.101 4.101 23 H 0.083 0.917 24 C -0.139 4.139 25 C 0.104 3.896 26 C -0.094 4.094 27 C -0.148 4.148 28 C -0.152 4.152 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.019 0.981 39 H 0.021 0.979 40 H 0.384 0.616 41 H 0.256 0.744 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.054 0.946 49 H 0.051 0.949 50 H 0.059 0.941 51 H 0.056 0.944 52 H 0.052 0.948 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.507 14.532 18.493 25.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.163 4.163 3 C -0.085 4.085 4 H 0.098 0.902 5 C -0.176 4.176 6 C 0.316 3.684 7 O -0.412 6.412 8 N -0.356 5.356 9 C -0.011 4.011 10 C -0.122 4.122 11 H 0.104 0.896 12 C 0.036 3.964 13 N -0.376 5.376 14 C -0.372 4.372 15 H 0.087 0.913 16 C -0.209 4.209 17 N -0.581 5.581 18 Si 0.738 3.262 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.120 4.120 23 H 0.101 0.899 24 C -0.197 4.197 25 C -0.019 4.019 26 C -0.113 4.113 27 C -0.205 4.205 28 C -0.209 4.209 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.036 0.964 39 H 0.039 0.961 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.092 0.908 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.078 0.922 51 H 0.075 0.925 52 H 0.071 0.929 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.063 13.883 18.659 25.341 hybrid contribution 0.221 -0.733 -0.645 1.001 sum -9.842 13.150 18.014 24.379 Atomic orbital electron populations 1.21911 0.96492 1.01472 1.01415 1.21634 0.95341 0.96173 1.03124 1.20972 1.01113 0.94703 0.91735 0.90230 1.21855 1.01347 1.01056 0.93337 1.20321 0.83253 0.82418 0.82361 1.90718 1.33683 1.32982 1.83822 1.48900 1.39944 1.41203 1.05555 1.22146 0.95358 1.01402 0.82209 1.22376 0.94451 0.98669 0.96692 0.89647 1.20686 0.91414 0.89891 0.94434 1.42357 1.09129 1.20359 1.65794 1.19160 0.96135 0.94448 1.27409 0.91316 1.24734 0.95760 0.98801 1.01589 1.69643 1.00994 1.38733 1.48768 0.86271 0.76565 0.84175 0.79195 1.21305 1.21679 1.21264 1.22231 0.97465 0.97726 0.94611 0.89872 1.21727 1.00411 0.98074 0.99483 1.22554 0.90909 0.91984 0.96491 1.21214 1.00497 0.94757 0.94811 1.21867 1.01525 1.00709 0.96419 1.21936 1.01377 0.96079 1.01483 0.92953 0.93011 0.92573 0.90465 0.91954 0.89126 0.88912 0.92005 0.89220 0.96367 0.96125 0.78250 0.93456 0.91779 0.92726 0.92438 0.90589 0.91008 0.90813 0.92692 0.93021 0.92244 0.92520 0.92872 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.20 37.16 0.34 -1.14 16 2 C -0.13 -1.42 5.01 -26.73 -0.13 -1.55 16 3 C -0.07 -0.69 1.39 -90.62 -0.13 -0.81 16 4 H 0.08 0.98 7.81 -51.93 -0.41 0.57 16 5 C -0.14 -1.40 3.94 -27.88 -0.11 -1.51 16 6 C 0.53 7.86 7.45 -10.99 -0.08 7.78 16 7 O -0.54 -10.27 14.68 5.55 0.08 -10.19 16 8 N -0.62 -8.89 3.29 -169.96 -0.56 -9.45 16 9 C 0.11 1.90 6.31 -2.98 -0.02 1.88 16 10 C -0.10 -1.61 2.64 -89.25 -0.24 -1.85 16 11 H 0.09 1.34 7.85 -51.93 -0.41 0.94 16 12 C 0.16 3.29 5.35 -4.04 -0.02 3.27 16 13 N -0.73 -18.78 5.33 -59.90 -0.32 -19.10 16 14 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 17 N -0.93 -28.76 13.06 55.49 0.72 -28.04 16 18 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 C -0.10 -1.18 3.19 -88.91 -0.28 -1.46 16 23 H 0.08 1.01 7.87 -51.93 -0.41 0.60 16 24 C -0.14 -1.34 9.17 37.16 0.34 -0.99 16 25 C 0.10 1.08 6.39 -2.30 -0.01 1.07 16 26 C -0.09 -0.74 2.01 -90.63 -0.18 -0.93 16 27 C -0.15 -1.12 8.84 37.16 0.33 -0.80 16 28 C -0.15 -1.08 8.85 37.15 0.33 -0.75 16 29 H 0.05 0.50 6.54 -51.93 -0.34 0.16 16 30 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 31 H 0.06 0.45 6.22 -51.93 -0.32 0.13 16 32 H 0.08 1.14 6.23 -51.93 -0.32 0.82 16 33 H 0.06 0.67 6.72 -51.93 -0.35 0.32 16 34 H 0.09 0.80 5.80 -51.93 -0.30 0.50 16 35 H 0.09 0.80 6.11 -51.93 -0.32 0.48 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.09 1.90 7.48 -51.93 -0.39 1.51 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.38 10.32 7.51 -40.82 -0.31 10.02 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 45 H 0.08 0.61 7.05 -51.93 -0.37 0.25 16 46 H 0.07 0.67 8.02 -51.93 -0.42 0.25 16 47 H 0.07 0.55 6.30 -51.93 -0.33 0.22 16 48 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.06 0.46 6.55 -51.93 -0.34 0.12 16 51 H 0.06 0.37 6.29 -51.93 -0.33 0.05 16 52 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 53 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 398.48 15.07 6.01 6.01 Total: -1.00 -32.94 398.48 -9.05 -41.98 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -9.84 Total: 6.18 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -0.11 Total: -5.28 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.15 Total: -56.59 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.94 -9.05 -41.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106896517.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.191 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds