Wall clock time and date at job start Tue Mar 31 2020 10:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46838 * 2 1 4 4 H 1.09001 * 109.46973 * 174.84718 * 3 2 1 5 5 C 1.52999 * 109.47108 * 294.84069 * 3 2 1 6 6 C 1.50700 * 109.47447 * 293.53089 * 5 3 2 7 7 O 1.21289 * 119.99608 * 353.80558 * 6 5 3 8 8 N 1.34775 * 120.00383 * 173.80527 * 6 5 3 9 9 C 1.47490 * 127.03569 * 179.97438 * 8 6 5 10 10 C 1.53997 * 107.08295 * 154.52046 * 9 8 6 11 11 H 1.08993 * 110.32781 * 120.20026 * 10 9 8 12 12 C 1.52999 * 110.32653 * 242.31302 * 10 9 8 13 13 N 1.46504 * 109.47212 * 293.54667 * 12 10 9 14 14 C 1.36938 * 120.00082 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99977 * 359.97438 * 14 13 12 16 16 C 1.38810 * 119.99557 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00524 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99778 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46801 * 60.00162 * 18 16 14 20 20 H 1.48497 * 109.46972 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47195 * 300.00255 * 18 16 14 22 22 C 1.54615 * 105.04488 * 1.30524 * 10 9 8 23 23 H 1.09001 * 110.74153 * 263.51313 * 22 10 9 24 24 C 1.53008 * 110.74006 * 140.36827 * 22 10 9 25 25 C 1.48113 * 127.03170 * 359.68950 * 8 6 5 26 26 C 1.52998 * 109.47372 * 54.84289 * 3 2 1 27 27 C 1.52999 * 109.46829 * 59.99700 * 26 3 2 28 28 C 1.52992 * 109.47113 * 179.97438 * 26 3 2 29 29 H 1.08997 * 109.47222 * 62.11465 * 1 2 3 30 30 H 1.09007 * 109.46688 * 182.11440 * 1 2 3 31 31 H 1.09001 * 109.47060 * 302.10949 * 1 2 3 32 32 H 1.08999 * 109.46868 * 240.00144 * 2 1 3 33 33 H 1.09003 * 109.47332 * 120.00317 * 2 1 3 34 34 H 1.09000 * 109.47042 * 53.52772 * 5 3 2 35 35 H 1.08998 * 109.47074 * 173.52980 * 5 3 2 36 36 H 1.08998 * 109.91146 * 273.88049 * 9 8 6 37 37 H 1.08996 * 109.90959 * 35.15761 * 9 8 6 38 38 H 1.09003 * 109.47564 * 53.54736 * 12 10 9 39 39 H 1.09005 * 109.47154 * 173.54699 * 12 10 9 40 40 H 0.97005 * 119.99403 * 359.97438 * 13 12 10 41 41 H 0.96993 * 120.00117 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.46773 * 60.00171 * 24 22 10 43 43 H 1.08996 * 109.47018 * 179.97438 * 24 22 10 44 44 H 1.08995 * 109.47230 * 300.00098 * 24 22 10 45 45 H 1.09000 * 110.66147 * 337.76631 * 25 8 6 46 46 H 1.09002 * 110.66535 * 100.88297 * 25 8 6 47 47 H 1.09006 * 109.46721 * 300.00054 * 26 3 2 48 48 H 1.08998 * 109.47512 * 60.00535 * 27 26 3 49 49 H 1.09000 * 109.46771 * 180.02562 * 27 26 3 50 50 H 1.08997 * 109.47458 * 300.00033 * 27 26 3 51 51 H 1.08996 * 109.47449 * 59.99794 * 28 26 3 52 52 H 1.09000 * 109.47049 * 179.97438 * 28 26 3 53 53 H 1.09006 * 109.47413 * 299.99682 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1260 1.4439 0.0923 5 6 1.6386 2.1253 -1.3090 6 6 2.3682 1.4778 -2.4577 7 8 3.2162 0.6381 -2.2412 8 7 2.0784 1.8317 -3.7255 9 6 2.6922 1.3027 -4.9578 10 6 1.6635 1.4842 -6.0894 11 1 2.0745 2.1156 -6.8770 12 6 1.2544 0.1244 -6.6589 13 7 2.4033 -0.4904 -7.3286 14 6 2.2749 -1.7194 -7.9185 15 1 1.3268 -2.2358 -7.8898 16 6 3.3634 -2.3015 -8.5535 17 7 4.5190 -1.6724 -8.5881 18 14 3.1886 -3.9785 -9.3577 19 1 2.1484 -3.9141 -10.4155 20 1 4.4854 -4.3749 -9.9628 21 1 2.7926 -4.9793 -8.3345 22 6 0.4521 2.1765 -5.4233 23 1 -0.3041 1.4438 -5.1412 24 6 -0.1437 3.2371 -6.3514 25 6 1.0743 2.8273 -4.1663 26 6 1.4268 2.2002 1.1793 27 6 1.8282 1.5173 2.4883 28 6 1.9373 3.6425 1.1796 29 1 -0.3633 0.4806 -0.9083 30 1 -0.3633 -1.0271 0.0379 31 1 -0.3633 0.5463 0.8705 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 0.5636 2.0229 -1.4575 35 1 1.8998 3.1825 -1.2624 36 1 3.6003 1.8594 -5.1888 37 1 2.9237 0.2450 -4.8327 38 1 0.9173 -0.5224 -5.8488 39 1 0.4451 0.2596 -7.3766 40 1 3.2548 -0.0263 -7.3547 41 1 5.2795 -2.0791 -9.0320 42 1 -0.4731 2.7658 -7.2775 43 1 -0.9949 3.7108 -5.8625 44 1 0.6122 3.9897 -6.5756 45 1 0.3172 2.9767 -3.3966 46 1 1.5554 3.7713 -4.4224 47 1 0.3407 2.1988 1.0869 48 1 2.9143 1.5188 2.5808 49 1 1.3910 2.0569 3.3284 50 1 1.4649 0.4897 2.4883 51 1 1.6517 4.1292 0.2471 52 1 1.5001 4.1824 2.0195 53 1 3.0234 3.6436 1.2723 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106896517.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:23 Heat of formation + Delta-G solvation = -74.019320 kcal Electronic energy + Delta-G solvation = -27141.973666 eV Core-core repulsion = 23625.854594 eV Total energy + Delta-G solvation = -3516.119072 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.38755 -39.71670 -38.23925 -36.45652 -34.18612 -33.29380 -33.07638 -31.50783 -30.28721 -27.80236 -27.42822 -27.15541 -25.75659 -24.80754 -23.22925 -22.43604 -21.04439 -20.35196 -19.55473 -19.18750 -17.94089 -17.27364 -16.92079 -16.69012 -16.11602 -15.92868 -15.59736 -15.26606 -15.17679 -14.95234 -14.82532 -14.29487 -14.00799 -13.82417 -13.70962 -13.61973 -13.23390 -13.21055 -13.07953 -13.05411 -12.85865 -12.76464 -12.72289 -12.52704 -12.41865 -12.22009 -12.17048 -11.96733 -11.85819 -11.68341 -11.50319 -11.40709 -11.34292 -11.15709 -11.11973 -10.97242 -10.69006 -9.68863 -9.04187 -7.98378 -5.27746 1.43091 1.47193 1.53152 1.66799 2.00029 2.52825 3.34337 3.43476 3.55605 3.74470 3.76915 3.79970 3.90563 4.11338 4.20057 4.23006 4.25065 4.40536 4.46270 4.50184 4.51856 4.56089 4.60363 4.64075 4.66145 4.69100 4.78258 4.83271 4.86236 4.91097 4.93641 5.01277 5.03183 5.08856 5.12073 5.13484 5.18165 5.21838 5.23842 5.28070 5.32100 5.37584 5.39740 5.44428 5.47660 5.57836 5.59731 5.67990 6.23555 6.62723 7.21064 7.29581 8.05101 8.28198 9.25040 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.015692 B = 0.003109 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.952309 B = 9003.682019 C = 9965.679487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.064 4.064 4 H 0.051 0.949 5 C -0.124 4.124 6 C 0.517 3.483 7 O -0.592 6.592 8 N -0.623 5.623 9 C 0.115 3.885 10 C -0.093 4.093 11 H 0.088 0.912 12 C 0.165 3.835 13 N -0.745 5.745 14 C -0.249 4.249 15 H 0.074 0.926 16 C -0.076 4.076 17 N -0.969 5.969 18 Si 0.975 3.025 19 H -0.273 1.273 20 H -0.293 1.293 21 H -0.281 1.281 22 C -0.091 4.091 23 H 0.081 0.919 24 C -0.134 4.134 25 C 0.105 3.895 26 C -0.086 4.086 27 C -0.150 4.150 28 C -0.152 4.152 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.061 0.939 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.055 0.945 37 H 0.036 0.964 38 H 0.005 0.995 39 H 0.030 0.970 40 H 0.373 0.627 41 H 0.252 0.748 42 H 0.051 0.949 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.114 0.886 46 H 0.094 0.906 47 H 0.090 0.910 48 H 0.043 0.957 49 H 0.066 0.934 50 H 0.054 0.946 51 H 0.067 0.933 52 H 0.066 0.934 53 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.588 16.899 19.594 29.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.083 4.083 4 H 0.069 0.931 5 C -0.163 4.163 6 C 0.308 3.692 7 O -0.472 6.472 8 N -0.356 5.356 9 C -0.008 4.008 10 C -0.112 4.112 11 H 0.106 0.894 12 C 0.038 3.962 13 N -0.388 5.388 14 C -0.381 4.381 15 H 0.092 0.908 16 C -0.268 4.268 17 N -0.620 5.620 18 Si 0.803 3.197 19 H -0.198 1.198 20 H -0.220 1.220 21 H -0.207 1.207 22 C -0.111 4.111 23 H 0.099 0.901 24 C -0.191 4.191 25 C -0.016 4.016 26 C -0.105 4.105 27 C -0.207 4.207 28 C -0.209 4.209 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.022 0.978 39 H 0.048 0.952 40 H 0.205 0.795 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.103 0.897 44 H 0.084 0.916 45 H 0.133 0.867 46 H 0.112 0.888 47 H 0.109 0.891 48 H 0.063 0.937 49 H 0.085 0.915 50 H 0.073 0.927 51 H 0.085 0.915 52 H 0.085 0.915 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.215 16.288 19.766 28.821 hybrid contribution 1.185 -1.494 -0.948 2.130 sum -12.030 14.794 18.818 26.790 Atomic orbital electron populations 1.21880 0.94536 1.01723 1.02592 1.21576 0.97002 0.96700 1.00959 1.20932 0.99627 0.94465 0.93253 0.93082 1.21909 1.01918 1.01789 0.90681 1.21321 0.82758 0.81720 0.83379 1.90697 1.36314 1.35547 1.84676 1.49040 1.40363 1.41659 1.04536 1.21853 0.96180 0.98242 0.84549 1.22259 0.96262 0.96482 0.96209 0.89417 1.20812 0.89913 0.91754 0.93694 1.42582 1.10250 1.19943 1.66013 1.19590 0.96272 0.95516 1.26735 0.90830 1.25605 0.95546 1.02738 1.02909 1.69811 1.01665 1.40420 1.50090 0.85197 0.76540 0.79577 0.78375 1.19845 1.21959 1.20744 1.22232 0.95476 0.98128 0.95277 0.90059 1.21704 1.01547 0.97331 0.98557 1.22865 0.90756 0.91301 0.96712 1.21172 1.01116 0.94869 0.93295 1.21883 1.01015 1.00769 0.97009 1.21945 1.00803 0.95459 1.02672 0.92609 0.93483 0.90233 0.94823 0.92027 0.86562 0.86162 0.92646 0.94526 0.97752 0.95210 0.79481 0.93946 0.92973 0.89750 0.91646 0.86746 0.88801 0.89148 0.93733 0.91457 0.92658 0.91453 0.91491 0.93719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.20 71.98 0.66 -1.94 16 2 C -0.12 -2.88 5.01 30.59 0.15 -2.72 16 3 C -0.06 -1.27 1.39 -10.79 -0.02 -1.28 16 4 H 0.05 1.31 7.81 -2.39 -0.02 1.29 16 5 C -0.12 -2.27 3.94 29.85 0.12 -2.15 16 6 C 0.52 15.54 7.45 87.66 0.65 16.19 16 7 O -0.59 -24.39 14.68 -3.06 -0.04 -24.43 16 8 N -0.62 -17.49 3.29 -810.03 -2.67 -20.16 16 9 C 0.12 4.13 6.31 86.53 0.55 4.68 16 10 C -0.09 -2.92 2.64 -9.91 -0.03 -2.94 16 11 H 0.09 2.74 7.85 -2.39 -0.02 2.72 16 12 C 0.16 6.80 5.35 86.38 0.46 7.26 16 13 N -0.75 -39.74 5.33 -343.44 -1.83 -41.57 16 14 C -0.25 -14.61 9.99 84.03 0.84 -13.77 16 15 H 0.07 4.14 7.83 -2.91 -0.02 4.11 16 16 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 17 N -0.97 -61.73 13.06 21.65 0.28 -61.44 16 18 Si 0.97 47.92 29.55 68.60 2.03 49.95 16 19 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 21 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 22 C -0.09 -1.90 3.19 -9.69 -0.03 -1.94 16 23 H 0.08 1.76 7.87 -2.39 -0.02 1.74 16 24 C -0.13 -2.07 9.17 71.98 0.66 -1.41 16 25 C 0.10 1.81 6.39 86.62 0.55 2.37 16 26 C -0.09 -1.13 2.01 -10.80 -0.02 -1.15 16 27 C -0.15 -2.02 8.84 71.98 0.64 -1.38 16 28 C -0.15 -1.68 8.85 71.98 0.64 -1.04 16 29 H 0.05 0.92 6.54 -2.39 -0.02 0.91 16 30 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.08 1.01 6.22 -2.39 -0.01 1.00 16 32 H 0.03 1.07 6.23 -2.39 -0.01 1.05 16 33 H 0.06 1.37 6.72 -2.39 -0.02 1.36 16 34 H 0.12 1.58 5.80 -2.39 -0.01 1.56 16 35 H 0.12 1.59 6.11 -2.39 -0.01 1.58 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.04 1.69 7.48 -2.39 -0.02 1.67 16 38 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.37 21.14 7.51 -92.70 -0.70 20.45 16 41 H 0.25 15.53 8.31 -92.71 -0.77 14.75 16 42 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.06 0.94 8.11 -2.39 -0.02 0.92 16 45 H 0.11 1.19 7.05 -2.39 -0.02 1.17 16 46 H 0.09 1.31 8.02 -2.39 -0.02 1.29 16 47 H 0.09 0.94 6.30 -2.38 -0.02 0.92 16 48 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.05 0.78 6.55 -2.39 -0.02 0.77 16 51 H 0.07 0.60 6.29 -2.39 -0.02 0.59 16 52 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 53 H 0.04 0.60 8.14 -2.38 -0.02 0.58 16 Total: -1.00 -77.41 398.48 4.23 -73.17 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 0.17 Total: 29.79 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 6.29 Total: -5.31 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -4.22 Total: -123.18 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.04 Total: -24.43 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.95 kcal Total: -77.41 4.23 -73.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106896517.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.846 kcal (2) G-P(sol) polarization free energy of solvation -77.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds