Wall clock time and date at job start Tue Mar 31 2020 10:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47059 * 2 1 4 4 H 1.09003 * 109.47328 * 304.99777 * 3 2 1 5 5 C 1.52995 * 109.47188 * 65.00296 * 3 2 1 6 6 C 1.53005 * 109.46996 * 185.00196 * 3 2 1 7 7 H 1.09003 * 109.46740 * 299.99941 * 6 3 2 8 8 C 1.52995 * 109.47071 * 60.00028 * 6 3 2 9 9 C 1.50694 * 109.46887 * 180.02562 * 6 3 2 10 10 O 1.21281 * 120.00115 * 359.97438 * 9 6 3 11 11 N 1.34775 * 119.99788 * 179.97438 * 9 6 3 12 12 C 1.46508 * 120.00083 * 179.97438 * 11 9 6 13 13 C 1.52995 * 109.47100 * 176.55067 * 12 11 9 14 14 N 1.46507 * 109.47025 * 54.64213 * 13 12 11 15 15 C 1.36933 * 120.00158 * 62.76893 * 14 13 12 16 16 H 1.08001 * 119.99777 * 354.57439 * 15 14 13 17 17 C 1.38811 * 120.00296 * 174.57769 * 15 14 13 18 18 N 1.31618 * 119.99669 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00215 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47074 * 89.99620 * 19 17 15 21 21 H 1.48494 * 109.46900 * 209.99771 * 19 17 15 22 22 H 1.48499 * 109.46828 * 329.99536 * 19 17 15 23 23 C 1.52998 * 109.47055 * 174.63671 * 13 12 11 24 24 C 1.53005 * 109.47284 * 180.02562 * 23 13 12 25 25 C 1.53002 * 109.46897 * 300.00057 * 24 23 13 26 26 C 1.53003 * 109.47040 * 60.00390 * 25 24 23 27 27 C 1.52999 * 109.47571 * 294.64280 * 13 12 11 28 28 H 1.09005 * 109.47005 * 59.99954 * 1 2 3 29 29 H 1.08999 * 109.46958 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46819 * 300.00212 * 1 2 3 31 31 H 1.09003 * 109.47202 * 240.00298 * 2 1 3 32 32 H 1.08997 * 109.47210 * 120.00318 * 2 1 3 33 33 H 1.09003 * 109.47410 * 59.99531 * 5 3 2 34 34 H 1.08999 * 109.47273 * 180.02562 * 5 3 2 35 35 H 1.09003 * 109.47123 * 299.99745 * 5 3 2 36 36 H 1.08999 * 109.47273 * 299.99778 * 8 6 3 37 37 H 1.09003 * 109.47410 * 60.00323 * 8 6 3 38 38 H 1.09003 * 109.47123 * 180.02562 * 8 6 3 39 39 H 0.97003 * 120.00266 * 0.02562 * 11 9 6 40 40 H 1.09000 * 109.46747 * 56.55720 * 12 11 9 41 41 H 1.08994 * 109.47496 * 296.55550 * 12 11 9 42 42 H 0.97004 * 119.99699 * 243.04530 * 14 13 12 43 43 H 0.96996 * 119.99852 * 180.02562 * 18 17 15 44 44 H 1.08995 * 109.47368 * 300.00645 * 23 13 12 45 45 H 1.09003 * 109.47074 * 60.00579 * 23 13 12 46 46 H 1.08998 * 109.47142 * 180.02562 * 24 23 13 47 47 H 1.08995 * 109.46935 * 59.99800 * 24 23 13 48 48 H 1.08996 * 109.47766 * 300.00305 * 25 24 23 49 49 H 1.09003 * 109.47165 * 180.02562 * 25 24 23 50 50 H 1.09004 * 109.47132 * 179.97438 * 26 25 24 51 51 H 1.08995 * 109.47785 * 59.99649 * 26 25 24 52 52 H 1.09003 * 109.46897 * 299.99628 * 27 13 12 53 53 H 1.08998 * 109.47225 * 59.99917 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5649 1.4443 -0.1258 7 1 3.9995 0.9053 0.7161 8 6 3.9696 0.7603 -1.4331 9 6 4.0672 2.8651 -0.1251 10 8 3.2829 3.7856 -0.0336 11 7 5.3881 3.1128 -0.2263 12 6 5.8765 4.4941 -0.2262 13 6 7.4060 4.4942 -0.2645 14 7 7.8659 3.7050 -1.4100 15 6 7.5505 4.0981 -2.6832 16 1 6.8907 4.9385 -2.8411 17 6 8.0786 3.4165 -3.7710 18 7 8.8830 2.3926 -3.5786 19 14 7.6490 3.9532 -5.5079 20 1 8.6372 4.9588 -5.9740 21 1 7.6779 2.7751 -6.4114 22 1 6.2902 4.5522 -5.5189 23 6 7.9127 5.9316 -0.3993 24 6 9.4422 5.9317 -0.4383 25 6 9.9853 5.3186 0.8540 26 6 9.4787 3.8812 0.9887 27 6 7.9487 3.8812 1.0279 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.0699 1.5875 2.1492 34 1 1.9983 3.1543 1.3072 35 1 0.5490 2.1253 1.3969 36 1 3.6063 -0.2673 -1.4331 37 1 3.5350 1.2994 -2.2750 38 1 5.0559 0.7612 -1.5225 39 1 6.0155 2.3766 -0.2999 40 1 5.5357 4.9999 0.6772 41 1 5.4911 5.0158 -1.1021 42 1 8.3904 2.9017 -1.2663 43 1 9.2524 1.9165 -4.3387 44 1 7.5260 6.3683 -1.3201 45 1 7.5706 6.5188 0.4529 46 1 9.8031 6.9558 -0.5339 47 1 9.7839 5.3446 -1.2906 48 1 9.6435 5.9056 1.7064 49 1 11.0750 5.3191 0.8265 50 1 9.8660 3.4442 1.9092 51 1 9.8205 3.2940 0.1364 52 1 7.6066 4.4684 1.8802 53 1 7.5878 2.8572 1.1239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115793606.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:19 Heat of formation + Delta-G solvation = -67.275274 kcal Electronic energy + Delta-G solvation = -28049.395803 eV Core-core repulsion = 24533.569175 eV Total energy + Delta-G solvation = -3515.826628 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.86967 -38.68287 -36.48436 -34.39278 -33.29578 -32.09431 -30.92511 -30.22523 -29.11971 -28.48456 -25.59449 -24.35676 -23.78429 -23.41152 -22.07823 -20.59760 -20.02729 -19.32197 -18.29394 -17.17347 -16.66761 -15.58716 -15.17917 -15.03273 -14.79939 -14.33227 -14.12795 -14.01699 -13.72823 -13.57228 -13.50973 -13.01204 -12.92006 -12.75264 -12.33297 -12.02133 -11.91554 -11.75091 -11.69567 -11.65464 -11.56713 -11.44172 -11.15120 -11.02589 -10.88263 -10.77800 -10.61812 -10.53742 -10.44890 -10.31900 -10.17347 -10.03643 -9.78930 -9.61935 -9.31297 -9.08333 -8.85985 -8.33144 -7.00679 -5.80827 -3.09296 3.15075 3.40843 3.47887 3.48851 3.78438 4.56421 4.77767 4.91500 4.94399 5.20587 5.23551 5.27109 5.29277 5.31046 5.41789 5.56472 5.61290 5.62479 5.65321 5.68123 5.75539 5.78389 5.84080 5.93685 5.98127 5.99335 6.04170 6.05340 6.06454 6.12565 6.12913 6.17660 6.21066 6.27082 6.33549 6.42366 6.45901 6.52396 6.53623 6.60804 6.66033 6.80621 6.82784 6.84886 7.00392 7.16732 7.21238 7.71449 8.15215 8.37376 8.80174 9.50027 10.02952 10.39694 11.41145 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.012014 B = 0.004567 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.104532 B = 6128.888144 C = 7600.691568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.069 4.069 4 H 0.074 0.926 5 C -0.158 4.158 6 C -0.106 4.106 7 H 0.089 0.911 8 C -0.146 4.146 9 C 0.513 3.487 10 O -0.554 6.554 11 N -0.700 5.700 12 C 0.115 3.885 13 C 0.191 3.809 14 N -0.709 5.709 15 C -0.227 4.227 16 H 0.068 0.932 17 C -0.008 4.008 18 N -0.931 5.931 19 Si 0.898 3.102 20 H -0.291 1.291 21 H -0.293 1.293 22 H -0.283 1.283 23 C -0.114 4.114 24 C -0.109 4.109 25 C -0.112 4.112 26 C -0.115 4.115 27 C -0.113 4.113 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.402 0.598 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.063 0.937 45 H 0.043 0.957 46 H 0.043 0.957 47 H 0.083 0.917 48 H 0.048 0.952 49 H 0.051 0.949 50 H 0.048 0.952 51 H 0.074 0.926 52 H 0.058 0.942 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.954 -2.680 10.674 13.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.088 4.088 4 H 0.093 0.907 5 C -0.215 4.215 6 C -0.127 4.127 7 H 0.107 0.893 8 C -0.204 4.204 9 C 0.299 3.701 10 O -0.434 6.434 11 N -0.349 5.349 12 C -0.011 4.011 13 C 0.099 3.901 14 N -0.351 5.351 15 C -0.359 4.359 16 H 0.086 0.914 17 C -0.204 4.204 18 N -0.580 5.580 19 Si 0.729 3.271 20 H -0.219 1.219 21 H -0.220 1.220 22 H -0.209 1.209 23 C -0.154 4.154 24 C -0.147 4.147 25 C -0.150 4.150 26 C -0.153 4.153 27 C -0.151 4.151 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.238 0.762 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.219 0.781 43 H 0.063 0.937 44 H 0.082 0.918 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.102 0.898 48 H 0.067 0.933 49 H 0.069 0.931 50 H 0.067 0.933 51 H 0.093 0.907 52 H 0.076 0.924 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.525 -1.945 10.571 13.121 hybrid contribution 0.313 -0.319 -1.159 1.242 sum -7.212 -2.264 9.412 12.072 Atomic orbital electron populations 1.21804 0.96075 1.01108 1.01942 1.21679 0.95786 0.96601 1.01984 1.20915 0.92753 0.95556 0.99548 0.90730 1.22097 1.00581 1.03040 0.95808 1.21336 0.97157 0.93903 1.00295 0.89256 1.21834 1.02548 1.00227 0.95766 1.20504 0.82464 0.91029 0.76127 1.90570 1.55309 1.46655 1.50869 1.45813 1.06912 1.09690 1.72517 1.21834 0.96598 0.82354 1.00326 1.19813 0.89984 0.92021 0.88261 1.42438 1.63770 1.28597 1.00317 1.19061 1.22195 1.11682 0.82926 0.91406 1.24637 0.99773 0.98539 0.97401 1.69640 1.36234 1.22488 1.29604 0.86328 0.77862 0.77417 0.85448 1.21852 1.21970 1.20912 1.21789 0.96060 0.97035 1.00543 1.21373 0.95532 0.99366 0.98425 1.21469 0.99255 0.96255 0.97996 1.21481 0.95379 0.97128 1.01301 1.21689 0.95895 1.00331 0.97167 0.92827 0.93143 0.92566 0.91589 0.92206 0.93862 0.89769 0.93246 0.91724 0.92133 0.91350 0.76219 0.93116 0.92014 0.78095 0.93656 0.91819 0.93801 0.93830 0.89818 0.93280 0.93065 0.93347 0.90716 0.92360 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.67 37.16 0.36 -1.08 16 2 C -0.12 -1.27 5.19 -26.73 -0.14 -1.41 16 3 C -0.07 -0.87 1.61 -90.62 -0.15 -1.02 16 4 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 5 C -0.16 -2.03 8.63 37.16 0.32 -1.71 16 6 C -0.11 -1.42 2.32 -91.77 -0.21 -1.64 16 7 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 8 C -0.15 -1.97 8.75 37.16 0.32 -1.64 16 9 C 0.51 8.69 6.86 -10.99 -0.08 8.62 16 10 O -0.55 -10.94 13.66 5.56 0.08 -10.86 16 11 N -0.70 -11.89 4.99 -60.30 -0.30 -12.19 16 12 C 0.12 2.08 4.37 -4.04 -0.02 2.06 16 13 C 0.19 3.35 0.41 -131.82 -0.05 3.30 16 14 N -0.71 -15.07 3.40 -47.23 -0.16 -15.23 16 15 C -0.23 -5.64 8.70 -15.06 -0.13 -5.77 16 16 H 0.07 1.73 6.77 -52.49 -0.36 1.37 16 17 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 18 N -0.93 -25.88 13.07 55.49 0.73 -25.16 16 19 Si 0.90 21.72 29.55 -169.99 -5.02 16.70 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 C -0.11 -1.97 4.52 -26.73 -0.12 -2.09 16 24 C -0.11 -1.84 5.77 -26.73 -0.15 -2.00 16 25 C -0.11 -1.64 5.92 -26.73 -0.16 -1.80 16 26 C -0.12 -1.73 5.75 -26.70 -0.15 -1.88 16 27 C -0.11 -1.70 4.65 -26.71 -0.12 -1.83 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.52 6.56 -51.93 -0.34 0.18 16 31 H 0.07 0.66 6.17 -51.93 -0.32 0.34 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 1.31 5.51 -51.93 -0.29 1.02 16 35 H 0.05 0.57 6.57 -51.93 -0.34 0.23 16 36 H 0.06 0.72 6.32 -51.93 -0.33 0.40 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.00 7.57 -51.93 -0.39 0.61 16 39 H 0.40 6.67 6.81 -40.82 -0.28 6.40 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 1.28 7.51 -51.93 -0.39 0.89 16 42 H 0.38 8.79 6.64 -40.82 -0.27 8.52 16 43 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.06 1.21 7.23 -51.93 -0.38 0.83 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.08 1.71 7.60 -51.93 -0.39 1.31 16 48 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 51 H 0.07 1.30 6.92 -51.93 -0.36 0.94 16 52 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 53 H 0.06 0.84 7.28 -51.93 -0.38 0.46 16 LS Contribution 392.30 15.07 5.91 5.91 Total: -1.00 -27.44 392.30 -9.21 -36.66 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -9.86 Total: 14.36 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -0.58 Total: -10.19 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.26 Total: -52.58 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.08 Total: -10.86 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -27.44 -9.21 -36.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115793606.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.618 kcal (2) G-P(sol) polarization free energy of solvation -27.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds