Wall clock time and date at job start Tue Mar 31 2020 10:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47059 * 2 1 4 4 H 1.09003 * 109.47328 * 304.99777 * 3 2 1 5 5 C 1.52995 * 109.47188 * 65.00296 * 3 2 1 6 6 C 1.53005 * 109.46996 * 185.00196 * 3 2 1 7 7 H 1.09003 * 109.46740 * 299.99941 * 6 3 2 8 8 C 1.52995 * 109.47071 * 60.00028 * 6 3 2 9 9 C 1.50694 * 109.46887 * 180.02562 * 6 3 2 10 10 O 1.21281 * 120.00115 * 359.97438 * 9 6 3 11 11 N 1.34775 * 119.99788 * 179.97438 * 9 6 3 12 12 C 1.46508 * 120.00083 * 179.97438 * 11 9 6 13 13 C 1.52995 * 109.47100 * 176.55067 * 12 11 9 14 14 N 1.46507 * 109.47025 * 54.64213 * 13 12 11 15 15 C 1.36933 * 120.00158 * 62.76893 * 14 13 12 16 16 H 1.08001 * 119.99777 * 354.57439 * 15 14 13 17 17 C 1.38811 * 120.00296 * 174.57769 * 15 14 13 18 18 N 1.31618 * 119.99669 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00215 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47074 * 89.99620 * 19 17 15 21 21 H 1.48494 * 109.46900 * 209.99771 * 19 17 15 22 22 H 1.48499 * 109.46828 * 329.99536 * 19 17 15 23 23 C 1.52998 * 109.47055 * 174.63671 * 13 12 11 24 24 C 1.53005 * 109.47284 * 180.02562 * 23 13 12 25 25 C 1.53002 * 109.46897 * 300.00057 * 24 23 13 26 26 C 1.53003 * 109.47040 * 60.00390 * 25 24 23 27 27 C 1.52999 * 109.47571 * 294.64280 * 13 12 11 28 28 H 1.09005 * 109.47005 * 59.99954 * 1 2 3 29 29 H 1.08999 * 109.46958 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46819 * 300.00212 * 1 2 3 31 31 H 1.09003 * 109.47202 * 240.00298 * 2 1 3 32 32 H 1.08997 * 109.47210 * 120.00318 * 2 1 3 33 33 H 1.09003 * 109.47410 * 59.99531 * 5 3 2 34 34 H 1.08999 * 109.47273 * 180.02562 * 5 3 2 35 35 H 1.09003 * 109.47123 * 299.99745 * 5 3 2 36 36 H 1.08999 * 109.47273 * 299.99778 * 8 6 3 37 37 H 1.09003 * 109.47410 * 60.00323 * 8 6 3 38 38 H 1.09003 * 109.47123 * 180.02562 * 8 6 3 39 39 H 0.97003 * 120.00266 * 0.02562 * 11 9 6 40 40 H 1.09000 * 109.46747 * 56.55720 * 12 11 9 41 41 H 1.08994 * 109.47496 * 296.55550 * 12 11 9 42 42 H 0.97004 * 119.99699 * 243.04530 * 14 13 12 43 43 H 0.96996 * 119.99852 * 180.02562 * 18 17 15 44 44 H 1.08995 * 109.47368 * 300.00645 * 23 13 12 45 45 H 1.09003 * 109.47074 * 60.00579 * 23 13 12 46 46 H 1.08998 * 109.47142 * 180.02562 * 24 23 13 47 47 H 1.08995 * 109.46935 * 59.99800 * 24 23 13 48 48 H 1.08996 * 109.47766 * 300.00305 * 25 24 23 49 49 H 1.09003 * 109.47165 * 180.02562 * 25 24 23 50 50 H 1.09004 * 109.47132 * 179.97438 * 26 25 24 51 51 H 1.08995 * 109.47785 * 59.99649 * 26 25 24 52 52 H 1.09003 * 109.46897 * 299.99628 * 27 13 12 53 53 H 1.08998 * 109.47225 * 59.99917 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5649 1.4443 -0.1258 7 1 3.9995 0.9053 0.7161 8 6 3.9696 0.7603 -1.4331 9 6 4.0672 2.8651 -0.1251 10 8 3.2829 3.7856 -0.0336 11 7 5.3881 3.1128 -0.2263 12 6 5.8765 4.4941 -0.2262 13 6 7.4060 4.4942 -0.2645 14 7 7.8659 3.7050 -1.4100 15 6 7.5505 4.0981 -2.6832 16 1 6.8907 4.9385 -2.8411 17 6 8.0786 3.4165 -3.7710 18 7 8.8830 2.3926 -3.5786 19 14 7.6490 3.9532 -5.5079 20 1 8.6372 4.9588 -5.9740 21 1 7.6779 2.7751 -6.4114 22 1 6.2902 4.5522 -5.5189 23 6 7.9127 5.9316 -0.3993 24 6 9.4422 5.9317 -0.4383 25 6 9.9853 5.3186 0.8540 26 6 9.4787 3.8812 0.9887 27 6 7.9487 3.8812 1.0279 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.0699 1.5875 2.1492 34 1 1.9983 3.1543 1.3072 35 1 0.5490 2.1253 1.3969 36 1 3.6063 -0.2673 -1.4331 37 1 3.5350 1.2994 -2.2750 38 1 5.0559 0.7612 -1.5225 39 1 6.0155 2.3766 -0.2999 40 1 5.5357 4.9999 0.6772 41 1 5.4911 5.0158 -1.1021 42 1 8.3904 2.9017 -1.2663 43 1 9.2524 1.9165 -4.3387 44 1 7.5260 6.3683 -1.3201 45 1 7.5706 6.5188 0.4529 46 1 9.8031 6.9558 -0.5339 47 1 9.7839 5.3446 -1.2906 48 1 9.6435 5.9056 1.7064 49 1 11.0750 5.3191 0.8265 50 1 9.8660 3.4442 1.9092 51 1 9.8205 3.2940 0.1364 52 1 7.6066 4.4684 1.8802 53 1 7.5878 2.8572 1.1239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115793606.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:18 Heat of formation + Delta-G solvation = -81.433876 kcal Electronic energy + Delta-G solvation = -28050.009766 eV Core-core repulsion = 24533.569175 eV Total energy + Delta-G solvation = -3516.440591 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.22197 -40.05842 -37.58718 -35.83846 -35.05064 -33.32004 -32.38800 -31.54519 -30.29759 -29.95942 -26.94371 -25.69561 -25.33947 -24.52933 -23.40195 -21.85344 -21.25735 -20.50458 -19.77944 -19.01950 -17.98704 -17.00512 -16.68599 -16.22471 -16.08393 -15.84416 -15.57563 -15.26124 -15.09667 -14.92724 -14.77758 -14.34595 -14.15338 -13.91056 -13.56700 -13.40024 -13.25831 -13.22904 -12.90627 -12.82498 -12.74473 -12.65582 -12.58895 -12.52789 -12.42181 -12.09725 -12.04885 -11.87984 -11.67457 -11.61877 -11.44234 -11.30920 -11.26193 -11.08230 -10.77431 -10.69412 -10.37526 -9.79399 -8.89057 -7.86687 -5.10487 1.43615 1.47030 1.51711 1.78791 2.44966 2.59719 3.46325 3.73223 3.80791 3.84202 3.93980 3.97721 4.03650 4.14699 4.24747 4.38126 4.40017 4.43288 4.49212 4.61822 4.67678 4.68728 4.76780 4.77412 4.79656 4.82224 4.84006 4.91711 4.94633 4.98298 5.00789 5.08434 5.13541 5.16842 5.18657 5.22270 5.23636 5.35954 5.38731 5.47224 5.49989 5.51487 5.55194 5.60005 5.62058 5.66793 5.78918 5.81455 6.36346 6.76599 7.42723 7.45545 8.17996 8.44714 9.35608 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.012014 B = 0.004567 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.104532 B = 6128.888144 C = 7600.691568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.067 4.067 4 H 0.050 0.950 5 C -0.153 4.153 6 C -0.098 4.098 7 H 0.115 0.885 8 C -0.141 4.141 9 C 0.506 3.494 10 O -0.585 6.585 11 N -0.699 5.699 12 C 0.123 3.877 13 C 0.190 3.810 14 N -0.708 5.708 15 C -0.205 4.205 16 H 0.058 0.942 17 C -0.059 4.059 18 N -0.958 5.958 19 Si 0.942 3.058 20 H -0.294 1.294 21 H -0.299 1.299 22 H -0.285 1.285 23 C -0.114 4.114 24 C -0.106 4.106 25 C -0.107 4.107 26 C -0.112 4.112 27 C -0.106 4.106 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.039 0.961 38 H 0.054 0.946 39 H 0.405 0.595 40 H 0.063 0.937 41 H 0.026 0.974 42 H 0.377 0.623 43 H 0.246 0.754 44 H 0.036 0.964 45 H 0.071 0.929 46 H 0.056 0.944 47 H 0.041 0.959 48 H 0.073 0.927 49 H 0.059 0.941 50 H 0.075 0.925 51 H 0.044 0.956 52 H 0.081 0.919 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.383 -3.415 13.066 15.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.086 4.086 4 H 0.068 0.932 5 C -0.210 4.210 6 C -0.119 4.119 7 H 0.133 0.867 8 C -0.198 4.198 9 C 0.294 3.706 10 O -0.466 6.466 11 N -0.348 5.348 12 C -0.004 4.004 13 C 0.100 3.900 14 N -0.348 5.348 15 C -0.337 4.337 16 H 0.076 0.924 17 C -0.252 4.252 18 N -0.609 5.609 19 Si 0.775 3.225 20 H -0.222 1.222 21 H -0.226 1.226 22 H -0.211 1.211 23 C -0.154 4.154 24 C -0.144 4.144 25 C -0.145 4.145 26 C -0.150 4.150 27 C -0.144 4.144 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.111 0.889 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.241 0.759 40 H 0.081 0.919 41 H 0.045 0.955 42 H 0.211 0.789 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.089 0.911 46 H 0.074 0.926 47 H 0.059 0.941 48 H 0.092 0.908 49 H 0.078 0.922 50 H 0.093 0.907 51 H 0.062 0.938 52 H 0.100 0.900 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.967 -2.659 12.982 15.463 hybrid contribution 0.389 0.002 -1.846 1.887 sum -7.579 -2.657 11.136 13.730 Atomic orbital electron populations 1.21805 0.95409 1.02026 1.01691 1.21647 0.96363 0.94620 1.02888 1.20895 0.91942 0.97120 0.98596 0.93183 1.22015 1.01318 1.01349 0.96356 1.21372 0.97829 0.91535 1.01175 0.86715 1.21798 1.01492 1.01603 0.94944 1.21203 0.81992 0.92355 0.75075 1.90566 1.55923 1.48035 1.52085 1.45833 1.07260 1.09269 1.72459 1.21679 0.96579 0.82892 0.99245 1.20008 0.89580 0.92080 0.88369 1.42448 1.63370 1.28711 1.00295 1.19142 1.20070 1.10052 0.84443 0.92399 1.25084 1.01012 0.99457 0.99650 1.69738 1.37940 1.23723 1.29501 0.85601 0.77280 0.76617 0.83017 1.22156 1.22552 1.21089 1.21777 0.96427 0.96767 1.00379 1.21300 0.95119 0.99623 0.98323 1.21448 0.99766 0.96053 0.97216 1.21443 0.95117 0.97117 1.01291 1.21657 0.96013 1.00809 0.95945 0.93569 0.91632 0.92405 0.91180 0.90714 0.92327 0.92765 0.92191 0.88887 0.94165 0.92725 0.75875 0.91917 0.95509 0.78878 0.94463 0.94489 0.91079 0.92564 0.94053 0.90827 0.92243 0.90675 0.93767 0.90027 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.67 71.98 0.70 -1.83 16 2 C -0.12 -2.13 5.19 30.60 0.16 -1.97 16 3 C -0.07 -1.61 1.61 -10.79 -0.02 -1.62 16 4 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 5 C -0.15 -3.72 8.63 71.98 0.62 -3.09 16 6 C -0.10 -2.52 2.32 -11.54 -0.03 -2.54 16 7 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 8 C -0.14 -3.66 8.75 71.98 0.63 -3.03 16 9 C 0.51 17.06 6.86 87.66 0.60 17.66 16 10 O -0.58 -23.38 13.66 -3.03 -0.04 -23.43 16 11 N -0.70 -23.57 4.99 -463.07 -2.31 -25.87 16 12 C 0.12 4.41 4.37 86.38 0.38 4.78 16 13 C 0.19 6.55 0.41 3.60 0.00 6.56 16 14 N -0.71 -30.52 3.40 -303.35 -1.03 -31.55 16 15 C -0.20 -10.40 8.70 84.03 0.73 -9.67 16 16 H 0.06 3.05 6.77 -2.91 -0.02 3.03 16 17 C -0.06 -3.21 5.50 84.86 0.47 -2.74 16 18 N -0.96 -54.50 13.07 21.65 0.28 -54.22 16 19 Si 0.94 45.82 29.55 68.60 2.03 47.84 16 20 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 21 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 22 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 23 C -0.11 -3.83 4.52 30.60 0.14 -3.69 16 24 C -0.11 -3.48 5.77 30.60 0.18 -3.30 16 25 C -0.11 -2.86 5.92 30.60 0.18 -2.68 16 26 C -0.11 -3.10 5.75 30.61 0.18 -2.92 16 27 C -0.11 -2.95 4.65 30.61 0.14 -2.81 16 28 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 0.94 6.56 -2.39 -0.02 0.92 16 31 H 0.07 1.22 6.17 -2.39 -0.01 1.20 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.05 1.67 5.51 -2.39 -0.01 1.65 16 35 H 0.06 1.30 6.57 -2.39 -0.02 1.28 16 36 H 0.09 1.88 6.32 -2.39 -0.02 1.86 16 37 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.05 1.57 7.57 -2.39 -0.02 1.55 16 39 H 0.40 13.24 6.81 -92.71 -0.63 12.61 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.03 1.14 7.51 -2.39 -0.02 1.12 16 42 H 0.38 17.54 6.64 -92.70 -0.62 16.92 16 43 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 44 H 0.04 1.42 7.23 -2.39 -0.02 1.40 16 45 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.04 1.71 7.60 -2.39 -0.02 1.69 16 48 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 51 H 0.04 1.51 6.92 -2.39 -0.02 1.49 16 52 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 53 H 0.06 1.68 7.28 -2.39 -0.02 1.66 16 Total: -1.00 -61.27 392.30 3.62 -57.66 By element: Atomic # 1 Polarization: 42.86 SS G_CDS: -0.37 Total: 42.49 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 5.05 Total: -12.92 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -3.06 Total: -111.64 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.04 Total: -23.43 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -61.27 3.62 -57.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115793606.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.776 kcal (2) G-P(sol) polarization free energy of solvation -61.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds