Wall clock time and date at job start Tue Mar 31 2020 11:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47113 * 2 1 4 4 C 1.52995 * 109.47306 * 120.00427 * 2 1 3 5 5 C 1.53003 * 109.47306 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46986 * 300.00047 * 5 4 2 7 7 C 1.53000 * 109.47415 * 59.99679 * 6 5 4 8 8 H 1.09002 * 109.47106 * 60.00216 * 7 6 5 9 9 C 1.50694 * 109.47355 * 180.02562 * 7 6 5 10 10 O 1.21283 * 120.00363 * 120.00014 * 9 7 6 11 11 N 1.34784 * 119.99988 * 300.00132 * 9 7 6 12 12 C 1.46493 * 119.99864 * 179.72721 * 11 9 7 13 13 C 1.53001 * 109.47084 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.47182 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.46815 * 179.97438 * 14 13 12 16 16 C 1.53003 * 109.46815 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.46815 * 180.02562 * 16 15 14 18 18 N 1.46507 * 109.46867 * 179.97438 * 17 16 15 19 19 C 1.36935 * 119.99629 * 180.02562 * 18 17 16 20 20 H 1.07990 * 120.00307 * 359.97438 * 19 18 17 21 21 C 1.38815 * 119.99389 * 180.02562 * 19 18 17 22 22 N 1.31617 * 120.00335 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99582 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47564 * 59.99499 * 23 21 19 25 25 H 1.48505 * 109.46859 * 179.97438 * 23 21 19 26 26 H 1.48508 * 109.47010 * 299.99296 * 23 21 19 27 27 C 1.53000 * 109.46986 * 240.00475 * 2 1 3 28 28 H 1.09002 * 109.47113 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46759 * 299.99912 * 1 2 3 30 30 H 1.08998 * 109.47018 * 59.99578 * 1 2 3 31 31 H 1.09007 * 109.46935 * 299.99553 * 4 2 1 32 32 H 1.09002 * 109.47384 * 59.99738 * 4 2 1 33 33 H 1.09002 * 109.47113 * 59.99572 * 5 4 2 34 34 H 1.09000 * 109.47521 * 180.02562 * 5 4 2 35 35 H 1.09007 * 109.47195 * 299.99946 * 6 5 4 36 36 H 1.08995 * 109.47242 * 179.97438 * 6 5 4 37 37 H 0.97000 * 119.99339 * 0.02562 * 11 9 7 38 38 H 1.09007 * 109.47196 * 299.99538 * 12 11 9 39 39 H 1.09006 * 109.47678 * 59.99732 * 12 11 9 40 40 H 1.09007 * 109.46593 * 299.99743 * 13 12 11 41 41 H 1.08993 * 109.47372 * 59.99485 * 13 12 11 42 42 H 1.08993 * 109.47057 * 299.99535 * 14 13 12 43 43 H 1.09001 * 109.47095 * 59.99863 * 14 13 12 44 44 H 1.08993 * 109.47254 * 299.99813 * 15 14 13 45 45 H 1.09001 * 109.47075 * 60.00250 * 15 14 13 46 46 H 1.08993 * 109.47057 * 299.99934 * 16 15 14 47 47 H 1.09001 * 109.47095 * 60.00262 * 16 15 14 48 48 H 1.08993 * 109.47254 * 299.99813 * 17 16 15 49 49 H 1.09001 * 109.47075 * 60.00250 * 17 16 15 50 50 H 0.96995 * 119.99641 * 0.02562 * 18 17 16 51 51 H 0.96995 * 120.00093 * 180.02562 * 22 21 19 52 52 H 1.09000 * 109.46966 * 59.99691 * 27 2 1 53 53 H 1.09002 * 109.46807 * 299.99713 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5701 -0.7207 1.2495 6 6 4.0806 -1.4415 0.0001 7 6 3.5705 -0.7203 -1.2491 8 1 3.9335 0.3075 -1.2488 9 6 4.0728 -1.4306 -2.4795 10 8 3.2847 -1.8915 -3.2779 11 7 5.3980 -1.5537 -2.6929 12 6 5.8862 -2.2494 -3.8860 13 6 7.4162 -2.2488 -3.8864 14 6 7.9262 -2.9760 -5.1323 15 6 9.4562 -2.9748 -5.1329 16 6 9.9662 -3.7025 -6.3784 17 6 11.4963 -3.7019 -6.3788 18 7 11.9846 -4.3992 -7.5711 19 6 13.3309 -4.5255 -7.7870 20 1 14.0327 -4.1107 -7.0788 21 6 13.7936 -5.1858 -8.9170 22 7 12.9383 -5.6909 -9.7805 23 14 15.6301 -5.3587 -9.2113 24 1 16.2443 -6.1042 -8.0834 25 1 15.8609 -6.0992 -10.4777 26 1 16.2452 -4.0103 -9.3067 27 6 2.0400 -0.7212 -1.2493 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.6768 -0.2074 2.1392 32 1 1.6767 -1.7490 1.2491 33 1 3.9330 0.3071 1.2497 34 1 3.9335 -1.2350 2.1391 35 1 3.7176 -2.4694 -0.0002 36 1 5.1705 -1.4408 0.0001 37 1 6.0282 -1.1854 -2.0541 38 1 5.5237 -3.2774 -3.8811 39 1 5.5221 -1.7400 -4.7783 40 1 7.7791 -1.2209 -3.8912 41 1 7.7800 -2.7584 -2.9943 42 1 7.5634 -4.0037 -5.1271 43 1 7.5624 -2.4667 -6.0247 44 1 9.8188 -1.9469 -5.1383 45 1 9.8204 -3.4838 -4.2405 46 1 9.6037 -4.7304 -6.3726 47 1 9.6021 -3.1938 -7.2711 48 1 11.8592 -2.6741 -6.3844 49 1 11.8600 -4.2108 -5.4861 50 1 11.3542 -4.7715 -8.2074 51 1 13.2616 -6.1526 -10.5699 52 1 1.6766 -0.2073 -2.1392 53 1 1.6767 -1.7488 -1.2493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179403173.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:38 Heat of formation + Delta-G solvation = -109.087845 kcal Electronic energy + Delta-G solvation = -24615.993879 eV Core-core repulsion = 21098.354122 eV Total energy + Delta-G solvation = -3517.639757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.25792 -38.99288 -37.88413 -36.73952 -35.33489 -33.89836 -33.27329 -32.03219 -31.28994 -28.36316 -27.24310 -25.94587 -24.56072 -23.35135 -22.60679 -22.19087 -21.98014 -20.98391 -20.58817 -19.11917 -17.91370 -17.10057 -17.05241 -16.65507 -16.39655 -15.94814 -15.55605 -15.40228 -15.31945 -15.22084 -14.91799 -14.82977 -14.25233 -13.97881 -13.89553 -13.52837 -13.42782 -13.29146 -13.04196 -12.92190 -12.72267 -12.62778 -12.42446 -12.39992 -12.20364 -12.12968 -12.00908 -11.85920 -11.81029 -11.80020 -11.49433 -11.42156 -11.35312 -11.34719 -10.97697 -10.92750 -10.62598 -10.09865 -9.01933 -7.96390 -5.26211 1.46537 1.50498 1.56812 1.62346 2.20593 2.55807 3.36896 3.60472 3.69948 3.72926 3.75887 4.00728 4.00806 4.15575 4.16898 4.24434 4.25776 4.31440 4.34590 4.40853 4.53462 4.55944 4.58786 4.63493 4.67417 4.77508 4.78876 4.84100 4.89119 4.97068 4.98173 4.98937 5.06170 5.10738 5.14728 5.16127 5.19678 5.28394 5.30088 5.34304 5.35213 5.38506 5.42400 5.46276 5.48288 5.53131 5.56003 5.60938 6.25993 6.56064 7.26105 7.31424 8.08601 8.31531 9.27240 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.049973 B = 0.001392 C = 0.001365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.168559 B =20111.709492 C =20509.358784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 H 0.080 0.920 4 C -0.117 4.117 5 C -0.114 4.114 6 C -0.107 4.107 7 C -0.099 4.099 8 H 0.119 0.881 9 C 0.509 3.491 10 O -0.591 6.591 11 N -0.717 5.717 12 C 0.119 3.881 13 C -0.116 4.116 14 C -0.114 4.114 15 C -0.103 4.103 16 C -0.117 4.117 17 C 0.148 3.852 18 N -0.752 5.752 19 C -0.253 4.253 20 H 0.076 0.924 21 C -0.077 4.077 22 N -0.971 5.971 23 Si 0.978 3.022 24 H -0.276 1.276 25 H -0.294 1.294 26 H -0.276 1.276 27 C -0.092 4.092 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.084 0.916 37 H 0.416 0.584 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.053 0.947 47 H 0.053 0.947 48 H 0.020 0.980 49 H 0.019 0.981 50 H 0.372 0.628 51 H 0.252 0.748 52 H 0.052 0.948 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.356 15.013 27.472 39.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 H 0.099 0.901 4 C -0.155 4.155 5 C -0.152 4.152 6 C -0.145 4.145 7 C -0.120 4.120 8 H 0.136 0.864 9 C 0.296 3.704 10 O -0.471 6.471 11 N -0.370 5.370 12 C -0.005 4.005 13 C -0.154 4.154 14 C -0.152 4.152 15 C -0.141 4.141 16 C -0.155 4.155 17 C 0.022 3.978 18 N -0.394 5.394 19 C -0.385 4.385 20 H 0.094 0.906 21 C -0.269 4.269 22 N -0.622 5.622 23 Si 0.806 3.194 24 H -0.202 1.202 25 H -0.220 1.220 26 H -0.202 1.202 27 C -0.131 4.131 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.253 0.747 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.037 0.963 49 H 0.037 0.963 50 H 0.204 0.796 51 H 0.061 0.939 52 H 0.071 0.929 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -23.720 14.712 26.952 38.801 hybrid contribution 0.870 -0.544 -0.923 1.380 sum -22.849 14.168 26.029 37.421 Atomic orbital electron populations 1.21830 0.95090 1.01652 1.02024 1.21134 0.95685 0.99811 0.93964 0.90146 1.21642 0.95962 1.00412 0.97455 1.21524 0.95216 1.01475 0.96968 1.21544 1.01406 0.98859 0.92702 1.21391 0.97367 1.01363 0.91874 0.86355 1.21331 0.82232 0.79054 0.87744 1.90692 1.56666 1.50672 1.49089 1.45983 1.07015 1.58181 1.25789 1.21319 0.95056 0.96548 0.87580 1.21684 0.92199 1.02366 0.99141 1.21455 0.94891 1.00844 0.98017 1.21414 0.95246 1.00712 0.96723 1.21644 0.94035 1.00612 0.99234 1.20880 0.93898 0.94443 0.88599 1.42665 1.04006 1.67511 1.25231 1.19668 0.84941 1.29067 1.04798 0.90585 1.25645 1.02415 1.01412 0.97442 1.69822 1.34731 1.43786 1.13858 0.85151 0.79588 0.77812 0.76842 1.20207 1.21976 1.20195 1.21376 0.92974 1.00614 0.98089 0.93312 0.91560 0.92997 0.90829 0.92777 0.90432 0.90685 0.92808 0.89702 0.74655 0.92909 0.92840 0.89924 0.89917 0.92077 0.92075 0.91176 0.91183 0.92807 0.92800 0.96253 0.96255 0.79612 0.93933 0.92936 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.19 71.98 0.66 -0.78 16 2 C -0.09 -0.82 2.72 -10.79 -0.03 -0.85 16 3 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 4 C -0.12 -0.89 5.20 30.59 0.16 -0.73 16 5 C -0.11 -0.65 5.92 30.60 0.18 -0.47 16 6 C -0.11 -0.87 5.10 30.59 0.16 -0.71 16 7 C -0.10 -1.14 2.53 -11.52 -0.03 -1.17 16 8 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 9 C 0.51 9.50 7.15 87.65 0.63 10.12 16 10 O -0.59 -17.05 15.98 -3.04 -0.05 -17.10 16 11 N -0.72 -9.93 5.45 -463.05 -2.52 -12.45 16 12 C 0.12 2.01 5.67 86.38 0.49 2.50 16 13 C -0.12 -1.57 5.33 30.60 0.16 -1.41 16 14 C -0.11 -2.14 5.22 30.60 0.16 -1.98 16 15 C -0.10 -2.32 5.21 30.60 0.16 -2.16 16 16 C -0.12 -3.77 5.33 30.60 0.16 -3.60 16 17 C 0.15 6.08 6.26 86.38 0.54 6.62 16 18 N -0.75 -40.10 5.60 -343.45 -1.92 -42.03 16 19 C -0.25 -14.65 9.99 84.03 0.84 -13.81 16 20 H 0.08 4.19 7.83 -2.92 -0.02 4.17 16 21 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 22 N -0.97 -60.96 13.06 21.65 0.28 -60.68 16 23 Si 0.98 46.74 29.55 68.60 2.03 48.77 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 26 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 27 C -0.09 -1.32 3.77 30.61 0.12 -1.21 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.08 0.40 7.56 -2.39 -0.02 0.38 16 37 H 0.42 2.94 7.89 -92.71 -0.73 2.21 16 38 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 46 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.37 21.07 7.67 -92.71 -0.71 20.36 16 51 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 52 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 53 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 Total: -1.00 -73.69 415.66 2.04 -71.65 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: -0.60 Total: 25.55 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 4.82 Total: -13.72 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -4.16 Total: -115.15 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.05 Total: -17.10 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -73.69 2.04 -71.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179403173.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.435 kcal (2) G-P(sol) polarization free energy of solvation -73.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds