Wall clock time and date at job start Tue Mar 31 2020 09:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47160 * 2 1 4 4 H 1.09004 * 110.05828 * 53.28765 * 3 2 1 5 5 C 1.54265 * 110.03546 * 291.87092 * 3 2 1 6 6 C 1.54888 * 104.19778 * 217.10501 * 5 3 2 7 7 C 1.54890 * 102.74820 * 37.94190 * 6 5 3 8 8 C 1.53873 * 110.03276 * 174.70515 * 3 2 1 9 9 H 1.09002 * 110.03269 * 238.62154 * 8 3 2 10 10 C 1.50699 * 110.03303 * 0.02562 * 8 3 2 11 11 O 1.21280 * 120.00520 * 86.42428 * 10 8 3 12 12 N 1.34787 * 119.99839 * 266.42675 * 10 8 3 13 13 C 1.46494 * 119.99821 * 180.27384 * 12 10 8 14 14 C 1.52998 * 109.47260 * 179.72130 * 13 12 10 15 15 C 1.53002 * 109.47419 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.46890 * 179.97438 * 15 14 13 17 17 C 1.53002 * 109.46890 * 179.97438 * 16 15 14 18 18 C 1.53006 * 109.47147 * 180.02562 * 17 16 15 19 19 N 1.46494 * 109.46988 * 179.97438 * 18 17 16 20 20 C 1.36939 * 120.00217 * 179.97438 * 19 18 17 21 21 H 1.07996 * 119.99592 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00474 * 180.02562 * 20 19 18 23 23 N 1.31626 * 119.99697 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00011 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47616 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47479 * 120.00118 * 24 22 20 27 27 H 1.48507 * 109.46889 * 239.99642 * 24 22 20 28 28 H 1.08994 * 109.47390 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46844 * 299.99897 * 1 2 3 30 30 H 1.09005 * 109.47333 * 59.99938 * 1 2 3 31 31 H 1.08999 * 109.46844 * 240.00102 * 2 1 3 32 32 H 1.08991 * 109.47443 * 120.00287 * 2 1 3 33 33 H 1.09000 * 110.48302 * 335.78695 * 5 3 2 34 34 H 1.09000 * 110.48854 * 98.42212 * 5 3 2 35 35 H 1.08998 * 110.75606 * 156.25516 * 6 5 3 36 36 H 1.08997 * 110.75440 * 279.44287 * 6 5 3 37 37 H 1.09000 * 110.48699 * 203.38193 * 7 6 5 38 38 H 1.08997 * 110.48403 * 80.73540 * 7 6 5 39 39 H 0.96995 * 119.99861 * 359.97438 * 12 10 8 40 40 H 1.08996 * 109.47293 * 299.72347 * 13 12 10 41 41 H 1.09006 * 109.47264 * 59.72208 * 13 12 10 42 42 H 1.09004 * 109.46950 * 300.00022 * 14 13 12 43 43 H 1.08998 * 109.47025 * 59.99597 * 14 13 12 44 44 H 1.09004 * 109.47016 * 299.99906 * 15 14 13 45 45 H 1.08991 * 109.46788 * 59.99990 * 15 14 13 46 46 H 1.08996 * 109.47417 * 300.00075 * 16 15 14 47 47 H 1.09005 * 109.47595 * 60.00283 * 16 15 14 48 48 H 1.09004 * 109.47016 * 299.99915 * 17 16 15 49 49 H 1.08998 * 109.47413 * 59.99768 * 17 16 15 50 50 H 1.08997 * 109.46514 * 299.99359 * 18 17 16 51 51 H 1.08993 * 109.47162 * 59.99786 * 18 17 16 52 52 H 0.97005 * 120.00217 * 359.97438 * 19 18 17 53 53 H 0.96996 * 119.99496 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5875 1.9990 0.8208 5 6 1.7072 2.1207 -1.3450 6 6 2.9369 3.0173 -1.6329 7 6 4.1180 2.1476 -1.1351 8 6 3.5728 1.4596 0.1334 9 1 3.8642 2.0236 1.0195 10 6 4.0991 0.0503 0.2223 11 8 4.3409 -0.5718 -0.7903 12 7 4.3009 -0.5190 1.4273 13 6 4.8181 -1.8868 1.5137 14 6 4.9602 -2.2864 2.9838 15 6 5.5010 -3.7148 3.0741 16 6 5.6436 -4.1141 4.5442 17 6 6.1838 -5.5427 4.6345 18 6 6.3258 -5.9423 6.1046 19 7 6.8424 -7.3104 6.1911 20 6 7.0533 -7.8866 7.4153 21 1 6.8383 -7.3325 8.3170 22 6 7.5434 -9.1827 7.4973 23 7 7.8049 -9.8581 6.3982 24 14 7.8303 -9.9689 9.1673 25 1 7.4604 -9.0077 10.2371 26 1 6.9957 -11.1911 9.2891 27 1 9.2637 -10.3327 9.3033 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.5876 1.3736 -2.1296 34 1 0.8059 2.7270 -1.2538 35 1 3.0276 3.2174 -2.7005 36 1 2.8757 3.9490 -1.0706 37 1 4.9762 2.7736 -0.8907 38 1 4.3878 1.4050 -1.8859 39 1 4.1078 -0.0214 2.2372 40 1 4.1277 -2.5684 1.0170 41 1 5.7924 -1.9384 1.0274 42 1 5.6507 -1.6048 3.4805 43 1 3.9860 -2.2349 3.4700 44 1 4.8108 -4.3967 2.5773 45 1 6.4751 -3.7658 2.5880 46 1 6.3339 -3.4322 5.0406 47 1 4.6695 -4.0630 5.0308 48 1 5.4930 -6.2244 4.1382 49 1 7.1577 -5.5944 4.1478 50 1 7.0164 -5.2607 6.6012 51 1 5.3517 -5.8907 6.5909 52 1 7.0352 -7.8081 5.3811 53 1 8.1470 -10.7640 6.4555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179498705.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:32 Heat of formation + Delta-G solvation = -80.456144 kcal Electronic energy + Delta-G solvation = -25028.371510 eV Core-core repulsion = 21511.973317 eV Total energy + Delta-G solvation = -3516.398193 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.83500 -38.04804 -36.72340 -35.37656 -33.96264 -33.52171 -31.96178 -30.40903 -29.40253 -28.01245 -26.82120 -24.22044 -23.27584 -22.47036 -21.77243 -21.11396 -20.94753 -20.64710 -19.42074 -17.18840 -16.96708 -16.63005 -16.20958 -15.96665 -15.22553 -15.05068 -14.81402 -14.61062 -14.26012 -13.92640 -13.64455 -13.47717 -13.39506 -13.12288 -12.78393 -12.71632 -12.45918 -12.34137 -11.96739 -11.74092 -11.67125 -11.45252 -11.35301 -11.28483 -11.19164 -11.03786 -10.96114 -10.92471 -10.83938 -10.73174 -10.70917 -10.40268 -10.25344 -10.00890 -9.88905 -9.63011 -9.32196 -8.84111 -6.87791 -5.73387 -3.01737 2.37338 2.88404 3.45081 3.50250 3.52909 4.00621 4.11221 4.19974 4.54057 4.60613 4.67230 4.74200 4.76175 4.81676 4.90986 4.96071 4.99731 5.09586 5.13468 5.22075 5.24221 5.27530 5.38762 5.39764 5.41178 5.48339 5.56922 5.61510 5.64930 5.65828 5.69211 5.71224 5.75002 5.75978 5.86731 5.94477 5.95367 5.97289 6.01344 6.14560 6.17524 6.34901 6.35489 6.42667 6.49731 6.92897 6.96945 7.20347 7.73187 7.96067 8.46056 9.56690 10.16489 10.50947 11.49836 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.036426 B = 0.001524 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.500750 B =18365.224518 C =18642.395296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C -0.076 4.076 4 H 0.079 0.921 5 C -0.118 4.118 6 C -0.124 4.124 7 C -0.114 4.114 8 C -0.112 4.112 9 H 0.089 0.911 10 C 0.524 3.476 11 O -0.539 6.539 12 N -0.733 5.733 13 C 0.117 3.883 14 C -0.130 4.130 15 C -0.116 4.116 16 C -0.113 4.113 17 C -0.127 4.127 18 C 0.152 3.848 19 N -0.735 5.735 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.017 4.017 23 N -0.934 5.934 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.399 0.601 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.060 0.940 50 H 0.016 0.984 51 H 0.016 0.984 52 H 0.383 0.617 53 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.381 29.751 -15.674 36.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C -0.095 4.095 4 H 0.098 0.902 5 C -0.156 4.156 6 C -0.161 4.161 7 C -0.152 4.152 8 C -0.133 4.133 9 H 0.107 0.893 10 C 0.311 3.689 11 O -0.416 6.416 12 N -0.385 5.385 13 C -0.007 4.007 14 C -0.168 4.168 15 C -0.154 4.154 16 C -0.151 4.151 17 C -0.165 4.165 18 C 0.025 3.975 19 N -0.379 5.379 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.583 5.583 24 Si 0.739 3.261 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.233 0.767 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.079 0.921 50 H 0.034 0.966 51 H 0.034 0.966 52 H 0.217 0.783 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.193 29.257 -16.218 35.959 hybrid contribution 0.210 -0.500 1.202 1.319 sum -12.983 28.757 -15.016 34.942 Atomic orbital electron populations 1.21755 0.95459 1.01770 1.01707 1.21855 0.96403 0.95691 1.02930 1.21730 0.92067 0.96884 0.98826 0.90230 1.22455 0.97896 0.98597 0.96605 1.22480 0.94533 0.97952 1.01166 1.22372 0.97762 0.98863 0.96165 1.22064 0.96907 0.93317 1.01061 0.89262 1.20458 0.76639 0.88622 0.83221 1.90694 1.51225 1.64522 1.35118 1.46174 1.67440 1.16462 1.08374 1.21432 0.99589 0.82249 0.97393 1.21822 1.02043 0.98204 0.94738 1.21517 1.01469 0.94625 0.97818 1.21497 1.01202 0.97150 0.95257 1.21733 1.01041 0.95248 0.98445 1.20656 0.96126 0.87693 0.93073 1.42406 1.78254 1.11063 1.06213 1.19311 1.35713 0.96277 0.85683 0.91158 1.24757 1.02316 0.97108 0.97040 1.69679 1.51340 1.11509 1.25797 0.86103 0.77448 0.79162 0.83418 1.20572 1.21869 1.21873 0.92705 0.92820 0.92609 0.90928 0.91721 0.91121 0.91469 0.91261 0.91457 0.91419 0.89546 0.76656 0.91474 0.91465 0.91339 0.91339 0.91657 0.91656 0.92117 0.92126 0.92096 0.92090 0.96593 0.96598 0.78336 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.77 37.16 0.36 -0.56 16 2 C -0.13 -0.96 4.12 -26.73 -0.11 -1.07 16 3 C -0.08 -0.45 2.93 -89.50 -0.26 -0.72 16 4 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 5 C -0.12 -0.67 5.55 -25.07 -0.14 -0.81 16 6 C -0.12 -0.67 6.91 -24.74 -0.17 -0.84 16 7 C -0.11 -0.78 6.31 -25.07 -0.16 -0.94 16 8 C -0.11 -0.74 3.29 -90.66 -0.30 -1.04 16 9 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 10 C 0.52 4.87 4.68 -10.98 -0.05 4.81 16 11 O -0.54 -7.17 15.03 5.56 0.08 -7.08 16 12 N -0.73 -5.53 4.99 -60.30 -0.30 -5.84 16 13 C 0.12 1.02 5.67 -4.05 -0.02 1.00 16 14 C -0.13 -1.03 5.33 -26.73 -0.14 -1.18 16 15 C -0.12 -1.18 5.21 -26.73 -0.14 -1.32 16 16 C -0.11 -1.39 5.21 -26.73 -0.14 -1.53 16 17 C -0.13 -2.08 5.33 -26.73 -0.14 -2.22 16 18 C 0.15 3.17 6.26 -4.04 -0.03 3.15 16 19 N -0.74 -19.50 5.60 -59.91 -0.34 -19.83 16 20 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 21 H 0.07 1.98 7.83 -52.49 -0.41 1.56 16 22 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 23 N -0.93 -28.98 13.06 55.49 0.72 -28.25 16 24 Si 0.91 22.83 29.55 -169.99 -5.02 17.80 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.32 7.52 -51.93 -0.39 -0.07 16 31 H 0.07 0.70 7.12 -51.93 -0.37 0.33 16 32 H 0.06 0.50 6.79 -51.93 -0.35 0.15 16 33 H 0.07 0.48 7.75 -51.93 -0.40 0.07 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.79 6.88 -51.93 -0.36 0.44 16 39 H 0.40 2.00 8.47 -40.82 -0.35 1.65 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 51 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 52 H 0.38 10.62 7.67 -40.82 -0.31 10.30 16 53 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 412.82 15.07 6.22 6.22 Total: -1.00 -33.44 412.82 -10.85 -44.29 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -10.53 Total: 3.61 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -1.69 Total: -10.92 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.09 Total: -53.92 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: 0.08 Total: -7.08 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.44 -10.85 -44.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179498705.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.162 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds