Wall clock time and date at job start Tue Mar 31 2020 09:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47160 * 2 1 4 4 H 1.09004 * 110.05828 * 53.28765 * 3 2 1 5 5 C 1.54265 * 110.03546 * 291.87092 * 3 2 1 6 6 C 1.54888 * 104.19778 * 217.10501 * 5 3 2 7 7 C 1.54890 * 102.74820 * 37.94190 * 6 5 3 8 8 C 1.53873 * 110.03276 * 174.70515 * 3 2 1 9 9 H 1.09002 * 110.03269 * 238.62154 * 8 3 2 10 10 C 1.50699 * 110.03303 * 0.02562 * 8 3 2 11 11 O 1.21280 * 120.00520 * 86.42428 * 10 8 3 12 12 N 1.34787 * 119.99839 * 266.42675 * 10 8 3 13 13 C 1.46494 * 119.99821 * 180.27384 * 12 10 8 14 14 C 1.52998 * 109.47260 * 179.72130 * 13 12 10 15 15 C 1.53002 * 109.47419 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.46890 * 179.97438 * 15 14 13 17 17 C 1.53002 * 109.46890 * 179.97438 * 16 15 14 18 18 C 1.53006 * 109.47147 * 180.02562 * 17 16 15 19 19 N 1.46494 * 109.46988 * 179.97438 * 18 17 16 20 20 C 1.36939 * 120.00217 * 179.97438 * 19 18 17 21 21 H 1.07996 * 119.99592 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00474 * 180.02562 * 20 19 18 23 23 N 1.31626 * 119.99697 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00011 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47616 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47479 * 120.00118 * 24 22 20 27 27 H 1.48507 * 109.46889 * 239.99642 * 24 22 20 28 28 H 1.08994 * 109.47390 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46844 * 299.99897 * 1 2 3 30 30 H 1.09005 * 109.47333 * 59.99938 * 1 2 3 31 31 H 1.08999 * 109.46844 * 240.00102 * 2 1 3 32 32 H 1.08991 * 109.47443 * 120.00287 * 2 1 3 33 33 H 1.09000 * 110.48302 * 335.78695 * 5 3 2 34 34 H 1.09000 * 110.48854 * 98.42212 * 5 3 2 35 35 H 1.08998 * 110.75606 * 156.25516 * 6 5 3 36 36 H 1.08997 * 110.75440 * 279.44287 * 6 5 3 37 37 H 1.09000 * 110.48699 * 203.38193 * 7 6 5 38 38 H 1.08997 * 110.48403 * 80.73540 * 7 6 5 39 39 H 0.96995 * 119.99861 * 359.97438 * 12 10 8 40 40 H 1.08996 * 109.47293 * 299.72347 * 13 12 10 41 41 H 1.09006 * 109.47264 * 59.72208 * 13 12 10 42 42 H 1.09004 * 109.46950 * 300.00022 * 14 13 12 43 43 H 1.08998 * 109.47025 * 59.99597 * 14 13 12 44 44 H 1.09004 * 109.47016 * 299.99906 * 15 14 13 45 45 H 1.08991 * 109.46788 * 59.99990 * 15 14 13 46 46 H 1.08996 * 109.47417 * 300.00075 * 16 15 14 47 47 H 1.09005 * 109.47595 * 60.00283 * 16 15 14 48 48 H 1.09004 * 109.47016 * 299.99915 * 17 16 15 49 49 H 1.08998 * 109.47413 * 59.99768 * 17 16 15 50 50 H 1.08997 * 109.46514 * 299.99359 * 18 17 16 51 51 H 1.08993 * 109.47162 * 59.99786 * 18 17 16 52 52 H 0.97005 * 120.00217 * 359.97438 * 19 18 17 53 53 H 0.96996 * 119.99496 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5875 1.9990 0.8208 5 6 1.7072 2.1207 -1.3450 6 6 2.9369 3.0173 -1.6329 7 6 4.1180 2.1476 -1.1351 8 6 3.5728 1.4596 0.1334 9 1 3.8642 2.0236 1.0195 10 6 4.0991 0.0503 0.2223 11 8 4.3409 -0.5718 -0.7903 12 7 4.3009 -0.5190 1.4273 13 6 4.8181 -1.8868 1.5137 14 6 4.9602 -2.2864 2.9838 15 6 5.5010 -3.7148 3.0741 16 6 5.6436 -4.1141 4.5442 17 6 6.1838 -5.5427 4.6345 18 6 6.3258 -5.9423 6.1046 19 7 6.8424 -7.3104 6.1911 20 6 7.0533 -7.8866 7.4153 21 1 6.8383 -7.3325 8.3170 22 6 7.5434 -9.1827 7.4973 23 7 7.8049 -9.8581 6.3982 24 14 7.8303 -9.9689 9.1673 25 1 7.4604 -9.0077 10.2371 26 1 6.9957 -11.1911 9.2891 27 1 9.2637 -10.3327 9.3033 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.5876 1.3736 -2.1296 34 1 0.8059 2.7270 -1.2538 35 1 3.0276 3.2174 -2.7005 36 1 2.8757 3.9490 -1.0706 37 1 4.9762 2.7736 -0.8907 38 1 4.3878 1.4050 -1.8859 39 1 4.1078 -0.0214 2.2372 40 1 4.1277 -2.5684 1.0170 41 1 5.7924 -1.9384 1.0274 42 1 5.6507 -1.6048 3.4805 43 1 3.9860 -2.2349 3.4700 44 1 4.8108 -4.3967 2.5773 45 1 6.4751 -3.7658 2.5880 46 1 6.3339 -3.4322 5.0406 47 1 4.6695 -4.0630 5.0308 48 1 5.4930 -6.2244 4.1382 49 1 7.1577 -5.5944 4.1478 50 1 7.0164 -5.2607 6.6012 51 1 5.3517 -5.8907 6.5909 52 1 7.0352 -7.8081 5.3811 53 1 8.1470 -10.7640 6.4555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179498705.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:31 Heat of formation + Delta-G solvation = -100.181979 kcal Electronic energy + Delta-G solvation = -25029.226887 eV Core-core repulsion = 21511.973317 eV Total energy + Delta-G solvation = -3517.253570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.48961 -38.66361 -37.82456 -36.70278 -35.30591 -34.06802 -33.51776 -31.72538 -30.26796 -28.51617 -28.08852 -25.79222 -24.05824 -23.61562 -22.52031 -22.17637 -21.85521 -21.46533 -20.05296 -19.12197 -17.80699 -17.24892 -17.01829 -16.71972 -16.59848 -16.12076 -15.62965 -15.44716 -15.38825 -15.18744 -15.14885 -14.52519 -14.22460 -14.06759 -13.91902 -13.46272 -13.41236 -13.08029 -13.00785 -12.94062 -12.67135 -12.48958 -12.38931 -12.21776 -12.12384 -12.02296 -11.89345 -11.83015 -11.80807 -11.79118 -11.55796 -11.48228 -11.39620 -11.37138 -11.34276 -10.95450 -10.68722 -10.05763 -9.02462 -7.97398 -5.27086 1.46278 1.47849 1.58187 1.66264 2.23238 2.54969 3.36218 3.49234 3.62466 3.69320 3.73315 3.98434 4.00395 4.10860 4.19973 4.23798 4.29264 4.32695 4.38256 4.41184 4.52999 4.58064 4.61171 4.63404 4.66691 4.76826 4.77588 4.78322 4.85398 4.88807 4.97014 4.98271 5.03953 5.05695 5.11876 5.14882 5.17222 5.22869 5.25744 5.27986 5.34625 5.36567 5.42180 5.46603 5.49702 5.52588 5.54487 5.55691 6.25501 6.59736 7.30066 7.30717 8.07824 8.30595 9.26687 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.036426 B = 0.001524 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.500750 B =18365.224518 C =18642.395296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C -0.073 4.073 4 H 0.104 0.896 5 C -0.119 4.119 6 C -0.118 4.118 7 C -0.117 4.117 8 C -0.109 4.109 9 H 0.119 0.881 10 C 0.520 3.480 11 O -0.587 6.587 12 N -0.721 5.721 13 C 0.121 3.879 14 C -0.116 4.116 15 C -0.114 4.114 16 C -0.103 4.103 17 C -0.117 4.117 18 C 0.148 3.852 19 N -0.752 5.752 20 C -0.250 4.250 21 H 0.077 0.923 22 C -0.079 4.079 23 N -0.972 5.972 24 Si 0.978 3.022 25 H -0.264 1.264 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.040 0.960 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.415 0.585 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.053 0.947 49 H 0.053 0.947 50 H 0.020 0.980 51 H 0.020 0.980 52 H 0.372 0.628 53 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.384 32.328 -13.910 38.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C -0.091 4.091 4 H 0.122 0.878 5 C -0.156 4.156 6 C -0.156 4.156 7 C -0.155 4.155 8 C -0.130 4.130 9 H 0.137 0.863 10 C 0.308 3.692 11 O -0.467 6.467 12 N -0.373 5.373 13 C -0.003 4.003 14 C -0.154 4.154 15 C -0.152 4.152 16 C -0.141 4.141 17 C -0.155 4.155 18 C 0.022 3.978 19 N -0.394 5.394 20 C -0.382 4.382 21 H 0.095 0.905 22 C -0.271 4.271 23 N -0.622 5.622 24 Si 0.807 3.193 25 H -0.189 1.189 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.252 0.748 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.038 0.962 51 H 0.038 0.962 52 H 0.204 0.796 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -14.219 31.892 -14.413 37.776 hybrid contribution 0.515 -1.288 0.617 1.518 sum -13.703 30.604 -13.796 36.259 Atomic orbital electron populations 1.21736 0.94483 1.01593 1.02589 1.21787 0.97239 0.96485 1.01082 1.21775 0.91553 0.96012 0.99790 0.87774 1.22461 0.98843 0.98410 0.95932 1.22477 0.93399 0.98251 1.01455 1.22369 0.98966 0.98539 0.95673 1.22156 0.97239 0.91528 1.02099 0.86271 1.21019 0.75823 0.89552 0.82814 1.90676 1.53333 1.65887 1.36837 1.46066 1.66514 1.15989 1.08729 1.21280 0.98454 0.82747 0.97844 1.21680 1.02949 0.96745 0.94001 1.21452 1.01403 0.96100 0.96228 1.21411 1.01557 0.94297 0.96808 1.21645 1.00843 0.97848 0.95186 1.20878 0.95733 0.85077 0.96128 1.42681 1.78554 1.13066 1.05114 1.19744 1.34926 0.96678 0.86835 0.90530 1.25656 1.02724 0.97831 1.00872 1.69841 1.52631 1.11677 1.28089 0.85003 0.76953 0.78105 0.79269 1.18868 1.21858 1.21864 0.93489 0.91354 0.92219 0.94164 0.92199 0.93053 0.89800 0.91345 0.89506 0.90340 0.92721 0.74769 0.93030 0.92952 0.89961 0.89997 0.92121 0.92088 0.91183 0.91210 0.92814 0.92795 0.96228 0.96240 0.79610 0.93943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.77 71.98 0.70 -0.96 16 2 C -0.13 -1.83 4.12 30.59 0.13 -1.70 16 3 C -0.07 -0.73 2.93 -10.07 -0.03 -0.76 16 4 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 5 C -0.12 -1.20 5.55 31.67 0.18 -1.02 16 6 C -0.12 -1.09 6.91 31.89 0.22 -0.87 16 7 C -0.12 -1.53 6.31 31.67 0.20 -1.33 16 8 C -0.11 -1.26 3.29 -10.82 -0.04 -1.29 16 9 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 10 C 0.52 9.55 4.68 87.65 0.41 9.96 16 11 O -0.59 -16.54 15.03 -3.03 -0.05 -16.58 16 12 N -0.72 -10.02 4.99 -463.06 -2.31 -12.33 16 13 C 0.12 2.06 5.67 86.38 0.49 2.55 16 14 C -0.12 -1.59 5.33 30.59 0.16 -1.43 16 15 C -0.11 -2.16 5.21 30.59 0.16 -2.00 16 16 C -0.10 -2.33 5.21 30.59 0.16 -2.17 16 17 C -0.12 -3.78 5.33 30.60 0.16 -3.61 16 18 C 0.15 6.08 6.26 86.38 0.54 6.62 16 19 N -0.75 -40.12 5.60 -343.47 -1.92 -42.04 16 20 C -0.25 -14.49 9.99 84.03 0.84 -13.65 16 21 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 22 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 23 N -0.97 -61.07 13.06 21.65 0.28 -60.79 16 24 Si 0.98 46.88 29.55 68.60 2.03 48.91 16 25 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 26 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 27 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.62 7.52 -2.38 -0.02 0.61 16 31 H 0.04 0.83 7.12 -2.39 -0.02 0.82 16 32 H 0.06 0.88 6.79 -2.39 -0.02 0.87 16 33 H 0.05 0.71 7.75 -2.39 -0.02 0.69 16 34 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.05 1.07 6.88 -2.39 -0.02 1.06 16 39 H 0.42 3.06 8.47 -92.71 -0.79 2.27 16 40 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 48 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 50 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.37 21.09 7.67 -92.70 -0.71 20.37 16 53 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -73.74 412.82 2.14 -71.60 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: -0.64 Total: 27.09 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: 4.75 Total: -15.86 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -3.95 Total: -115.16 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.05 Total: -16.58 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -73.74 2.14 -71.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179498705.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.578 kcal (2) G-P(sol) polarization free energy of solvation -73.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds