Wall clock time and date at job start Tue Mar 31 2020 11:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 110.53807 * 2 1 4 4 C 1.54887 * 110.48663 * 122.60992 * 2 1 3 5 5 C 1.54890 * 102.91108 * 156.52843 * 4 2 1 6 6 C 1.54463 * 104.10368 * 322.30112 * 5 4 2 7 7 C 1.53877 * 106.68421 * 23.34437 * 6 5 4 8 8 C 1.52996 * 110.03079 * 240.87396 * 7 6 5 9 9 C 1.50700 * 110.07463 * 119.46505 * 7 6 5 10 10 O 1.21279 * 119.99802 * 242.81149 * 9 7 6 11 11 N 1.34776 * 120.00020 * 62.80396 * 9 7 6 12 12 C 1.46495 * 120.00069 * 180.02562 * 11 9 7 13 13 C 1.52995 * 109.47521 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47551 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.47379 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.47379 * 180.02562 * 15 14 13 17 17 C 1.52995 * 109.47049 * 180.02562 * 16 15 14 18 18 N 1.46505 * 109.47008 * 180.02562 * 17 16 15 19 19 C 1.36932 * 120.00145 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00051 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00384 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00511 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99663 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.46981 * 90.00184 * 23 21 19 25 25 H 1.48503 * 109.47231 * 210.00082 * 23 21 19 26 26 H 1.48498 * 109.47049 * 330.00158 * 23 21 19 27 27 H 1.09004 * 109.46842 * 298.84055 * 1 2 3 28 28 H 1.08994 * 109.47201 * 58.83876 * 1 2 3 29 29 H 1.08998 * 109.47128 * 178.84402 * 1 2 3 30 30 H 1.09002 * 110.75856 * 274.93753 * 4 2 1 31 31 H 1.09006 * 110.75640 * 38.12739 * 4 2 1 32 32 H 1.09003 * 110.48855 * 80.83451 * 5 4 2 33 33 H 1.09003 * 110.48748 * 203.47148 * 5 4 2 34 34 H 1.08999 * 109.85715 * 264.10233 * 6 5 4 35 35 H 1.08997 * 110.12155 * 142.72920 * 6 5 4 36 36 H 1.09002 * 109.47280 * 177.16799 * 8 7 6 37 37 H 1.09002 * 109.47197 * 297.16335 * 8 7 6 38 38 H 1.09000 * 109.47479 * 57.16360 * 8 7 6 39 39 H 0.96998 * 119.99624 * 0.02562 * 11 9 7 40 40 H 1.09009 * 109.47181 * 300.00600 * 12 11 9 41 41 H 1.09003 * 109.47150 * 60.00401 * 12 11 9 42 42 H 1.09009 * 109.46954 * 300.00213 * 13 12 11 43 43 H 1.09003 * 109.47010 * 59.99790 * 13 12 11 44 44 H 1.08999 * 109.47228 * 300.00146 * 14 13 12 45 45 H 1.09006 * 109.46816 * 60.00348 * 14 13 12 46 46 H 1.08999 * 109.47331 * 300.00415 * 15 14 13 47 47 H 1.09003 * 109.46825 * 60.00087 * 15 14 13 48 48 H 1.08999 * 109.47228 * 300.00478 * 16 15 14 49 49 H 1.08996 * 109.46674 * 60.00144 * 16 15 14 50 50 H 1.08999 * 109.47529 * 299.99706 * 17 16 15 51 51 H 1.08996 * 109.47389 * 60.00429 * 17 16 15 52 52 H 0.96994 * 119.99854 * 0.02562 * 18 17 16 53 53 H 0.96999 * 120.00284 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0721 -0.7819 1.2222 5 6 3.4905 -1.2020 0.7629 6 6 3.3165 -1.5405 -0.7341 7 6 2.0699 -0.7788 -1.2173 8 6 1.0139 -1.7662 -1.7181 9 6 2.4437 0.1794 -2.3188 10 8 2.2980 1.3728 -2.1597 11 7 2.9402 -0.2900 -3.4805 12 6 3.3042 0.6415 -4.5510 13 6 3.8370 -0.1438 -5.7512 14 6 4.2165 0.8290 -6.8694 15 6 4.7499 0.0437 -8.0693 16 6 5.1300 1.0165 -9.1874 17 6 5.6628 0.2311 -10.3874 18 7 6.0273 1.1627 -11.4578 19 6 6.5309 0.6858 -12.6385 20 1 6.6589 -0.3772 -12.7809 21 6 6.8758 1.5683 -13.6529 22 7 7.3594 1.1099 -14.7880 23 14 6.6524 3.4066 -13.4075 24 1 7.8908 3.9823 -12.8242 25 1 6.3759 4.0508 -14.7166 26 1 5.5128 3.6481 -12.4865 27 1 -0.3633 0.4957 0.9002 28 1 -0.3633 0.5317 -0.8793 29 1 -0.3633 -1.0274 -0.0207 30 1 2.1251 -0.1381 2.1002 31 1 1.4562 -1.6583 1.4243 32 1 4.1917 -0.3767 0.8870 33 1 3.8278 -2.0771 1.3184 34 1 3.1693 -2.6135 -0.8564 35 1 4.1928 -1.2170 -1.2959 36 1 0.1166 -1.2210 -2.0109 37 1 1.4045 -2.3111 -2.5775 38 1 0.7682 -2.4699 -0.9228 39 1 3.0565 -1.2445 -3.6077 40 1 2.4248 1.2113 -4.8515 41 1 4.0744 1.3243 -4.1923 42 1 4.7163 -0.7139 -5.4510 43 1 3.0665 -0.8263 -6.1098 44 1 3.3370 1.3987 -7.1695 45 1 4.9869 1.5118 -6.5111 46 1 5.6295 -0.5257 -7.7690 47 1 3.9798 -0.6394 -8.4278 48 1 4.2507 1.5863 -9.4878 49 1 5.9002 1.6992 -8.8286 50 1 6.5420 -0.3389 -10.0873 51 1 4.8923 -0.4513 -10.7461 52 1 5.9120 2.1172 -11.3301 53 1 7.6007 1.7267 -15.4966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179504941.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:52 Heat of formation + Delta-G solvation = -71.916561 kcal Electronic energy + Delta-G solvation = -25177.498810 eV Core-core repulsion = 21661.470920 eV Total energy + Delta-G solvation = -3516.027889 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.02433 -38.26887 -36.84211 -35.53723 -34.10027 -32.32520 -32.05713 -31.31861 -30.14394 -27.26205 -26.26553 -25.55690 -24.08831 -22.24645 -21.89846 -21.19654 -20.86224 -20.70554 -18.94064 -17.53395 -17.42176 -16.38980 -16.32067 -15.72561 -15.27123 -14.98185 -14.66859 -14.53633 -14.22831 -14.09653 -13.94181 -13.62956 -13.25077 -13.14894 -12.91642 -12.69907 -12.67151 -12.42864 -12.20410 -11.90744 -11.77160 -11.64214 -11.53887 -11.45379 -11.26971 -11.08163 -11.01082 -10.96797 -10.86538 -10.85649 -10.78694 -10.37204 -10.35814 -10.09120 -9.89420 -9.56369 -9.38368 -8.86505 -7.19760 -5.74596 -3.09623 2.34028 2.82457 3.39493 3.42627 3.46904 3.89452 4.04926 4.20471 4.49115 4.60068 4.61614 4.69377 4.70094 4.78266 4.82541 4.89240 4.95102 5.03921 5.12318 5.15908 5.22727 5.25510 5.30921 5.32651 5.38249 5.41138 5.49894 5.50290 5.53667 5.55880 5.58692 5.64131 5.65911 5.71421 5.79608 5.82767 5.86620 5.87443 6.02511 6.03042 6.12599 6.14249 6.22470 6.25233 6.38697 6.80027 6.84213 7.16197 7.91227 8.02471 8.44834 9.24514 9.97152 10.17591 11.43963 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.037425 B = 0.001587 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.988208 B =17639.505031 C =17858.958432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 H 0.093 0.907 4 C -0.120 4.120 5 C -0.124 4.124 6 C -0.115 4.115 7 C -0.082 4.082 8 C -0.139 4.139 9 C 0.523 3.477 10 O -0.538 6.538 11 N -0.730 5.730 12 C 0.117 3.883 13 C -0.130 4.130 14 C -0.116 4.116 15 C -0.113 4.113 16 C -0.131 4.131 17 C 0.156 3.844 18 N -0.759 5.759 19 C -0.244 4.244 20 H 0.089 0.911 21 C 0.002 3.998 22 N -0.936 5.936 23 Si 0.886 3.114 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.400 0.600 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.060 0.940 50 H 0.025 0.975 51 H 0.025 0.975 52 H 0.360 0.640 53 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.470 -7.566 35.761 38.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.099 4.099 3 H 0.111 0.889 4 C -0.158 4.158 5 C -0.162 4.162 6 C -0.152 4.152 7 C -0.085 4.085 8 C -0.196 4.196 9 C 0.309 3.691 10 O -0.414 6.414 11 N -0.381 5.381 12 C -0.007 4.007 13 C -0.168 4.168 14 C -0.154 4.154 15 C -0.151 4.151 16 C -0.169 4.169 17 C 0.029 3.971 18 N -0.404 5.404 19 C -0.374 4.374 20 H 0.107 0.893 21 C -0.193 4.193 22 N -0.584 5.584 23 Si 0.716 3.284 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.203 1.203 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.234 0.766 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.078 0.922 49 H 0.079 0.921 50 H 0.043 0.957 51 H 0.042 0.958 52 H 0.193 0.807 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.494 -6.853 35.673 38.751 hybrid contribution 0.023 0.876 -0.202 0.899 sum -13.470 -5.977 35.471 38.410 Atomic orbital electron populations 1.21884 0.94757 1.01761 1.01846 1.21940 0.95839 1.00133 0.91956 0.88921 1.22575 0.95915 0.99793 0.97470 1.22367 0.97465 1.01337 0.95007 1.22294 0.96085 1.00065 0.96790 1.21471 0.97128 0.95453 0.94429 1.21979 0.98218 0.98156 1.01229 1.20542 0.76351 0.89327 0.82902 1.90688 1.53481 1.16625 1.80647 1.46058 1.65945 1.10765 1.15377 1.21440 1.00350 0.92301 0.86578 1.21822 1.01400 0.98934 0.94679 1.21518 1.01373 0.97924 0.94630 1.21489 1.00890 0.98223 0.94527 1.21780 1.00936 0.98552 0.95591 1.20637 0.96770 0.92506 0.87194 1.42744 1.78755 1.04192 1.14706 1.19093 1.33929 0.94491 0.89913 0.89271 1.24683 1.01136 0.97489 0.96007 1.69705 1.49612 1.33664 1.05391 0.86520 0.77927 0.87036 0.76905 1.21078 1.21706 1.20343 0.92623 0.92537 0.92233 0.91333 0.91325 0.91475 0.91258 0.90613 0.91390 0.91580 0.92374 0.91154 0.76596 0.91467 0.91472 0.91258 0.91258 0.91678 0.91682 0.91903 0.91909 0.92154 0.92137 0.95710 0.95756 0.80722 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 7.99 37.16 0.30 -0.61 16 2 C -0.08 -0.57 2.70 -88.96 -0.24 -0.81 16 3 H 0.09 0.89 6.88 -51.93 -0.36 0.54 16 4 C -0.12 -0.64 6.32 -24.74 -0.16 -0.79 16 5 C -0.12 -0.65 6.85 -24.97 -0.17 -0.82 16 6 C -0.11 -0.60 6.07 -25.51 -0.15 -0.76 16 7 C -0.08 -0.54 0.70 -154.54 -0.11 -0.64 16 8 C -0.14 -0.68 6.86 37.16 0.26 -0.42 16 9 C 0.52 4.95 6.28 -10.99 -0.07 4.88 16 10 O -0.54 -7.30 15.41 5.56 0.09 -7.22 16 11 N -0.73 -5.51 5.34 -60.30 -0.32 -5.83 16 12 C 0.12 0.99 5.67 -4.05 -0.02 0.97 16 13 C -0.13 -0.98 5.33 -26.73 -0.14 -1.12 16 14 C -0.12 -1.10 5.21 -26.73 -0.14 -1.24 16 15 C -0.11 -1.30 5.21 -26.73 -0.14 -1.43 16 16 C -0.13 -1.98 5.33 -26.73 -0.14 -2.12 16 17 C 0.16 3.08 6.26 -4.04 -0.03 3.06 16 18 N -0.76 -18.76 5.41 -59.91 -0.32 -19.09 16 19 C -0.24 -7.16 10.47 -15.06 -0.16 -7.31 16 20 H 0.09 2.78 8.06 -52.48 -0.42 2.35 16 21 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 22 N -0.94 -29.93 13.97 55.49 0.78 -29.15 16 23 Si 0.89 22.60 27.73 -169.99 -4.71 17.88 16 24 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.28 -6.67 6.52 56.52 0.37 -6.30 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.42 7.85 -51.93 -0.41 0.02 16 29 H 0.06 0.29 6.39 -51.93 -0.33 -0.04 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.31 8.06 -51.93 -0.42 -0.11 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.29 7.67 -51.93 -0.40 -0.11 16 35 H 0.07 0.40 7.62 -51.93 -0.40 0.00 16 36 H 0.07 0.37 6.71 -51.93 -0.35 0.02 16 37 H 0.06 0.22 7.49 -51.93 -0.39 -0.16 16 38 H 0.07 0.27 7.64 -51.93 -0.40 -0.13 16 39 H 0.40 2.03 7.82 -40.82 -0.32 1.71 16 40 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 51 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 52 H 0.36 8.66 5.53 -40.82 -0.23 8.43 16 53 H 0.26 7.86 8.31 -40.82 -0.34 7.53 16 LS Contribution 407.67 15.07 6.14 6.14 Total: -1.00 -34.33 407.67 -9.91 -44.24 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -10.34 Total: 2.22 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -1.21 Total: -9.20 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 0.13 Total: -54.07 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: 0.09 Total: -7.22 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.71 Total: 17.88 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.33 -9.91 -44.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179504941.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.675 kcal (2) G-P(sol) polarization free energy of solvation -34.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds