Wall clock time and date at job start Tue Mar 31 2020 11:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 110.53807 * 2 1 4 4 C 1.54887 * 110.48663 * 122.60992 * 2 1 3 5 5 C 1.54890 * 102.91108 * 156.52843 * 4 2 1 6 6 C 1.54463 * 104.10368 * 322.30112 * 5 4 2 7 7 C 1.53877 * 106.68421 * 23.34437 * 6 5 4 8 8 C 1.52996 * 110.03079 * 240.87396 * 7 6 5 9 9 C 1.50700 * 110.07463 * 119.46505 * 7 6 5 10 10 O 1.21279 * 119.99802 * 242.81149 * 9 7 6 11 11 N 1.34776 * 120.00020 * 62.80396 * 9 7 6 12 12 C 1.46495 * 120.00069 * 180.02562 * 11 9 7 13 13 C 1.52995 * 109.47521 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47551 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.47379 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.47379 * 180.02562 * 15 14 13 17 17 C 1.52995 * 109.47049 * 180.02562 * 16 15 14 18 18 N 1.46505 * 109.47008 * 180.02562 * 17 16 15 19 19 C 1.36932 * 120.00145 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00051 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00384 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00511 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99663 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.46981 * 90.00184 * 23 21 19 25 25 H 1.48503 * 109.47231 * 210.00082 * 23 21 19 26 26 H 1.48498 * 109.47049 * 330.00158 * 23 21 19 27 27 H 1.09004 * 109.46842 * 298.84055 * 1 2 3 28 28 H 1.08994 * 109.47201 * 58.83876 * 1 2 3 29 29 H 1.08998 * 109.47128 * 178.84402 * 1 2 3 30 30 H 1.09002 * 110.75856 * 274.93753 * 4 2 1 31 31 H 1.09006 * 110.75640 * 38.12739 * 4 2 1 32 32 H 1.09003 * 110.48855 * 80.83451 * 5 4 2 33 33 H 1.09003 * 110.48748 * 203.47148 * 5 4 2 34 34 H 1.08999 * 109.85715 * 264.10233 * 6 5 4 35 35 H 1.08997 * 110.12155 * 142.72920 * 6 5 4 36 36 H 1.09002 * 109.47280 * 177.16799 * 8 7 6 37 37 H 1.09002 * 109.47197 * 297.16335 * 8 7 6 38 38 H 1.09000 * 109.47479 * 57.16360 * 8 7 6 39 39 H 0.96998 * 119.99624 * 0.02562 * 11 9 7 40 40 H 1.09009 * 109.47181 * 300.00600 * 12 11 9 41 41 H 1.09003 * 109.47150 * 60.00401 * 12 11 9 42 42 H 1.09009 * 109.46954 * 300.00213 * 13 12 11 43 43 H 1.09003 * 109.47010 * 59.99790 * 13 12 11 44 44 H 1.08999 * 109.47228 * 300.00146 * 14 13 12 45 45 H 1.09006 * 109.46816 * 60.00348 * 14 13 12 46 46 H 1.08999 * 109.47331 * 300.00415 * 15 14 13 47 47 H 1.09003 * 109.46825 * 60.00087 * 15 14 13 48 48 H 1.08999 * 109.47228 * 300.00478 * 16 15 14 49 49 H 1.08996 * 109.46674 * 60.00144 * 16 15 14 50 50 H 1.08999 * 109.47529 * 299.99706 * 17 16 15 51 51 H 1.08996 * 109.47389 * 60.00429 * 17 16 15 52 52 H 0.96994 * 119.99854 * 0.02562 * 18 17 16 53 53 H 0.96999 * 120.00284 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0721 -0.7819 1.2222 5 6 3.4905 -1.2020 0.7629 6 6 3.3165 -1.5405 -0.7341 7 6 2.0699 -0.7788 -1.2173 8 6 1.0139 -1.7662 -1.7181 9 6 2.4437 0.1794 -2.3188 10 8 2.2980 1.3728 -2.1597 11 7 2.9402 -0.2900 -3.4805 12 6 3.3042 0.6415 -4.5510 13 6 3.8370 -0.1438 -5.7512 14 6 4.2165 0.8290 -6.8694 15 6 4.7499 0.0437 -8.0693 16 6 5.1300 1.0165 -9.1874 17 6 5.6628 0.2311 -10.3874 18 7 6.0273 1.1627 -11.4578 19 6 6.5309 0.6858 -12.6385 20 1 6.6589 -0.3772 -12.7809 21 6 6.8758 1.5683 -13.6529 22 7 7.3594 1.1099 -14.7880 23 14 6.6524 3.4066 -13.4075 24 1 7.8908 3.9823 -12.8242 25 1 6.3759 4.0508 -14.7166 26 1 5.5128 3.6481 -12.4865 27 1 -0.3633 0.4957 0.9002 28 1 -0.3633 0.5317 -0.8793 29 1 -0.3633 -1.0274 -0.0207 30 1 2.1251 -0.1381 2.1002 31 1 1.4562 -1.6583 1.4243 32 1 4.1917 -0.3767 0.8870 33 1 3.8278 -2.0771 1.3184 34 1 3.1693 -2.6135 -0.8564 35 1 4.1928 -1.2170 -1.2959 36 1 0.1166 -1.2210 -2.0109 37 1 1.4045 -2.3111 -2.5775 38 1 0.7682 -2.4699 -0.9228 39 1 3.0565 -1.2445 -3.6077 40 1 2.4248 1.2113 -4.8515 41 1 4.0744 1.3243 -4.1923 42 1 4.7163 -0.7139 -5.4510 43 1 3.0665 -0.8263 -6.1098 44 1 3.3370 1.3987 -7.1695 45 1 4.9869 1.5118 -6.5111 46 1 5.6295 -0.5257 -7.7690 47 1 3.9798 -0.6394 -8.4278 48 1 4.2507 1.5863 -9.4878 49 1 5.9002 1.6992 -8.8286 50 1 6.5420 -0.3389 -10.0873 51 1 4.8923 -0.4513 -10.7461 52 1 5.9120 2.1172 -11.3301 53 1 7.6007 1.7267 -15.4966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179504941.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:51 Heat of formation + Delta-G solvation = -93.182212 kcal Electronic energy + Delta-G solvation = -25178.420957 eV Core-core repulsion = 21661.470920 eV Total energy + Delta-G solvation = -3516.950037 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.64639 -38.88209 -37.92646 -36.81889 -35.37324 -33.75379 -32.65594 -32.34239 -31.28040 -28.45687 -26.71368 -26.17779 -25.42601 -23.62512 -22.60261 -22.26725 -21.94244 -21.31115 -19.67473 -19.47535 -18.03229 -17.13510 -17.08286 -16.63499 -16.41745 -15.98576 -15.79486 -15.61089 -15.14037 -15.06844 -14.89899 -14.61670 -14.22535 -14.16134 -14.08786 -13.51136 -13.44994 -13.33909 -13.13907 -13.02163 -12.69142 -12.62074 -12.49087 -12.36488 -12.09114 -11.95910 -11.89422 -11.86777 -11.82676 -11.74497 -11.55290 -11.51382 -11.39965 -11.35934 -11.35244 -10.98340 -10.64625 -10.11188 -9.31870 -8.05320 -5.39144 1.36470 1.40150 1.47764 1.62375 2.18678 2.46673 3.25874 3.40395 3.55039 3.59575 3.73935 3.88297 4.00014 4.08275 4.21928 4.22755 4.26109 4.29968 4.36021 4.39737 4.54261 4.57816 4.59243 4.61630 4.63071 4.75995 4.80931 4.83761 4.91730 4.95295 4.96521 4.98798 4.99766 5.03177 5.08584 5.13335 5.17421 5.22316 5.26308 5.28790 5.33029 5.34558 5.43150 5.44669 5.51623 5.53918 5.56704 5.73025 6.19245 6.54694 7.05746 7.24380 7.82691 8.01952 9.16194 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.037425 B = 0.001587 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.988208 B =17639.505031 C =17858.958432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 H 0.058 0.942 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.112 4.112 7 C -0.078 4.078 8 C -0.137 4.137 9 C 0.516 3.484 10 O -0.588 6.588 11 N -0.718 5.718 12 C 0.120 3.880 13 C -0.118 4.118 14 C -0.113 4.113 15 C -0.105 4.105 16 C -0.121 4.121 17 C 0.150 3.850 18 N -0.763 5.763 19 C -0.242 4.242 20 H 0.055 0.945 21 C -0.065 4.065 22 N -0.983 5.983 23 Si 0.959 3.041 24 H -0.277 1.277 25 H -0.293 1.293 26 H -0.252 1.252 27 H 0.057 0.943 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.414 0.586 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.068 0.932 48 H 0.061 0.939 49 H 0.062 0.938 50 H 0.023 0.977 51 H 0.022 0.978 52 H 0.366 0.634 53 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.348 -8.397 37.837 41.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 H 0.076 0.924 4 C -0.152 4.152 5 C -0.163 4.163 6 C -0.149 4.149 7 C -0.081 4.081 8 C -0.194 4.194 9 C 0.304 3.696 10 O -0.468 6.468 11 N -0.370 5.370 12 C -0.004 4.004 13 C -0.155 4.155 14 C -0.151 4.151 15 C -0.144 4.144 16 C -0.159 4.159 17 C 0.024 3.976 18 N -0.409 5.409 19 C -0.373 4.373 20 H 0.073 0.927 21 C -0.257 4.257 22 N -0.634 5.634 23 Si 0.786 3.214 24 H -0.203 1.203 25 H -0.220 1.220 26 H -0.177 1.177 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.252 0.748 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.079 0.921 49 H 0.081 0.919 50 H 0.041 0.959 51 H 0.040 0.960 52 H 0.199 0.801 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.384 -7.732 37.789 41.166 hybrid contribution 0.314 1.052 -0.850 1.389 sum -14.070 -6.680 36.938 40.088 Atomic orbital electron populations 1.21858 0.94229 1.02685 1.01068 1.21924 0.96330 0.98756 0.93465 0.92380 1.22558 0.96130 1.00054 0.96446 1.22391 0.97078 1.01546 0.95297 1.22321 0.94939 1.01157 0.96518 1.21503 0.98374 0.95154 0.93055 1.22006 0.97147 0.97849 1.02421 1.21169 0.75551 0.89158 0.83751 1.90665 1.55638 1.18886 1.81609 1.45967 1.64906 1.11470 1.14614 1.21329 0.99396 0.92486 0.87218 1.21695 1.02165 0.98380 0.93298 1.21450 1.01204 0.98074 0.94375 1.21420 1.01435 0.97623 0.93875 1.21700 1.00748 0.98789 0.94634 1.20871 0.96658 0.92446 0.87643 1.42799 1.78491 1.05225 1.14356 1.19095 1.33323 0.93161 0.91706 0.92685 1.25567 1.01400 1.03029 0.95658 1.69889 1.51339 1.35574 1.06581 0.85351 0.78853 0.80103 0.77131 1.20256 1.21963 1.17681 0.92385 0.94427 0.90298 0.91447 0.89588 0.92906 0.89532 0.88216 0.92129 0.92568 0.90921 0.89304 0.74848 0.92813 0.92856 0.90072 0.90050 0.91836 0.91829 0.91278 0.91304 0.92052 0.91919 0.95909 0.96000 0.80113 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 7.99 71.98 0.58 -1.13 16 2 C -0.09 -1.20 2.70 -9.72 -0.03 -1.23 16 3 H 0.06 1.22 6.88 -2.38 -0.02 1.21 16 4 C -0.11 -1.05 6.32 31.88 0.20 -0.85 16 5 C -0.13 -1.10 6.85 31.74 0.22 -0.89 16 6 C -0.11 -0.94 6.07 31.39 0.19 -0.75 16 7 C -0.08 -0.93 0.70 -52.20 -0.04 -0.97 16 8 C -0.14 -1.00 6.86 71.98 0.49 -0.50 16 9 C 0.52 9.71 6.28 87.66 0.55 10.26 16 10 O -0.59 -16.80 15.41 -3.03 -0.05 -16.84 16 11 N -0.72 -9.96 5.34 -463.07 -2.47 -12.44 16 12 C 0.12 1.92 5.67 86.38 0.49 2.41 16 13 C -0.12 -1.47 5.33 30.59 0.16 -1.31 16 14 C -0.11 -1.87 5.21 30.59 0.16 -1.71 16 15 C -0.11 -2.14 5.21 30.59 0.16 -1.98 16 16 C -0.12 -3.40 5.33 30.59 0.16 -3.23 16 17 C 0.15 5.75 6.26 86.38 0.54 6.29 16 18 N -0.76 -37.02 5.41 -343.46 -1.86 -38.88 16 19 C -0.24 -14.32 10.47 84.03 0.88 -13.44 16 20 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 21 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 22 N -0.98 -64.15 13.97 21.65 0.30 -63.85 16 23 Si 0.96 46.33 27.73 68.60 1.90 48.23 16 24 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 26 H -0.25 -11.02 6.52 99.48 0.65 -10.38 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.04 0.59 7.85 -2.39 -0.02 0.57 16 29 H 0.08 0.63 6.39 -2.39 -0.02 0.61 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.09 0.51 8.06 -2.38 -0.02 0.49 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.10 0.39 7.67 -2.39 -0.02 0.37 16 35 H 0.06 0.61 7.62 -2.39 -0.02 0.59 16 36 H 0.06 0.54 6.71 -2.39 -0.02 0.53 16 37 H 0.07 0.32 7.49 -2.39 -0.02 0.31 16 38 H 0.09 0.35 7.64 -2.39 -0.02 0.33 16 39 H 0.41 3.21 7.82 -92.71 -0.73 2.48 16 40 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 46 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 52 H 0.37 16.80 5.53 -92.71 -0.51 16.29 16 53 H 0.26 16.00 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -76.55 407.67 2.58 -73.97 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -0.44 Total: 22.30 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 5.19 Total: -12.48 kcal Atomic # 7 Polarization: -111.14 SS G_CDS: -4.03 Total: -115.17 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.05 Total: -16.84 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.90 Total: 48.23 kcal Total: -76.55 2.58 -73.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179504941.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.212 kcal (2) G-P(sol) polarization free energy of solvation -76.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds