Wall clock time and date at job start Tue Mar 31 2020 10:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46813 * 2 1 4 4 H 1.09002 * 109.47554 * 304.99852 * 3 2 1 5 5 C 1.52993 * 109.47246 * 65.00554 * 3 2 1 6 6 C 1.53007 * 109.46761 * 185.00374 * 3 2 1 7 7 C 1.53001 * 109.46904 * 175.00018 * 6 3 2 8 8 C 1.53007 * 109.46848 * 179.97438 * 7 6 3 9 9 C 1.53001 * 109.46848 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.46948 * 180.02562 * 9 8 7 11 11 O 1.21279 * 119.99998 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99824 * 179.97438 * 10 9 8 13 13 C 1.47425 * 125.65163 * 0.02744 * 12 10 9 14 14 C 1.54906 * 104.83199 * 204.08964 * 13 12 10 15 15 C 1.55153 * 101.58465 * 322.98998 * 14 13 12 16 16 H 1.09000 * 110.71955 * 277.14012 * 15 14 13 17 17 N 1.46494 * 110.72198 * 154.04422 * 15 14 13 18 18 C 1.46505 * 119.99983 * 301.45114 * 17 15 14 19 19 C 1.36933 * 120.00214 * 121.45303 * 17 15 14 20 20 H 1.08003 * 119.99667 * 23.49123 * 19 17 15 21 21 C 1.38815 * 120.00266 * 203.48470 * 19 17 15 22 22 N 1.31620 * 119.99575 * 15.10579 * 21 19 17 23 23 Si 1.86800 * 120.00205 * 195.10240 * 21 19 17 24 24 H 1.48505 * 109.47123 * 90.00184 * 23 21 19 25 25 H 1.48499 * 109.47211 * 210.00180 * 23 21 19 26 26 H 1.48506 * 109.46910 * 330.00227 * 23 21 19 27 27 C 1.47027 * 125.64598 * 179.71431 * 12 10 9 28 28 H 1.09005 * 109.47164 * 299.99737 * 1 2 3 29 29 H 1.09003 * 109.47629 * 59.99533 * 1 2 3 30 30 H 1.08998 * 109.47106 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46676 * 240.00113 * 2 1 3 32 32 H 1.08994 * 109.47038 * 119.99891 * 2 1 3 33 33 H 1.08993 * 109.47498 * 59.99350 * 5 3 2 34 34 H 1.09004 * 109.47043 * 180.02562 * 5 3 2 35 35 H 1.08998 * 109.46945 * 299.99371 * 5 3 2 36 36 H 1.08993 * 109.47360 * 54.99837 * 6 3 2 37 37 H 1.09001 * 109.46728 * 294.99615 * 6 3 2 38 38 H 1.09004 * 109.46982 * 60.00177 * 7 6 3 39 39 H 1.08998 * 109.47434 * 299.99767 * 7 6 3 40 40 H 1.09004 * 109.46728 * 60.00581 * 8 7 6 41 41 H 1.08998 * 109.47369 * 300.00365 * 8 7 6 42 42 H 1.08998 * 109.47434 * 300.00325 * 9 8 7 43 43 H 1.08993 * 109.47260 * 60.00316 * 9 8 7 44 44 H 1.09001 * 110.36355 * 322.92834 * 13 12 10 45 45 H 1.09003 * 110.36650 * 85.24805 * 13 12 10 46 46 H 1.09006 * 111.00496 * 81.06672 * 14 13 12 47 47 H 1.08995 * 111.00347 * 204.91358 * 14 13 12 48 48 H 1.08998 * 109.47113 * 95.21045 * 18 17 15 49 49 H 1.08995 * 109.47242 * 215.21294 * 18 17 15 50 50 H 1.09004 * 109.47307 * 335.21688 * 18 17 15 51 51 H 0.97003 * 119.99872 * 179.97438 * 22 21 19 52 52 H 1.08995 * 109.88311 * 298.39990 * 27 12 10 53 53 H 1.09004 * 109.87984 * 59.56349 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5648 1.4443 -0.1258 7 6 4.0644 2.8850 -0.2512 8 6 5.5894 2.8869 -0.3764 9 6 6.0889 4.3275 -0.5025 10 6 7.5908 4.3293 -0.6264 11 8 8.2015 3.2815 -0.6155 12 7 8.2553 5.4953 -0.7504 13 6 7.6415 6.8353 -0.7787 14 6 8.6637 7.7240 -1.5303 15 6 10.0112 7.1490 -1.0195 16 1 10.2740 7.5818 -0.0542 17 7 11.0776 7.3810 -1.9968 18 6 10.9526 6.8510 -3.3569 19 6 12.1911 8.0931 -1.6392 20 1 12.4792 8.1592 -0.6004 21 6 12.9498 8.7299 -2.6117 22 7 12.4572 8.9068 -3.8194 23 14 14.6697 9.3358 -2.2065 24 1 15.6538 8.2618 -2.4954 25 1 14.9820 10.5288 -3.0337 26 1 14.7407 9.6984 -0.7681 27 6 9.7131 5.6418 -0.8733 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0698 1.5875 2.1491 34 1 1.9982 3.1543 1.3071 35 1 0.5490 2.1252 1.3969 36 1 3.8570 0.8801 -1.0114 37 1 4.0029 0.9836 0.7596 38 1 3.7722 3.4493 0.6344 39 1 3.6263 3.3458 -1.1365 40 1 5.8818 2.3225 -1.2619 41 1 6.0272 2.4262 0.5091 42 1 5.6511 4.7878 -1.3882 43 1 5.7964 4.8923 0.3827 44 1 6.6945 6.8074 -1.3178 45 1 7.4908 7.2051 0.2355 46 1 8.5701 7.6002 -2.6093 47 1 8.5534 8.7709 -1.2478 48 1 10.5457 7.6220 -4.0113 49 1 11.9343 6.5471 -3.7201 50 1 10.2846 5.9897 -3.3513 51 1 12.9872 9.3521 -4.4989 52 1 10.2016 5.2501 0.0189 53 1 10.0661 5.1087 -1.7561 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190370738.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:30 Heat of formation + Delta-G solvation = -49.338915 kcal Electronic energy + Delta-G solvation = -25740.592836 eV Core-core repulsion = 22225.543987 eV Total energy + Delta-G solvation = -3515.048849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.80217 -37.99404 -37.39794 -34.78363 -34.60497 -31.77087 -31.09807 -29.77997 -28.82513 -27.72135 -26.09288 -25.88161 -23.95832 -22.70520 -22.24172 -21.06521 -20.19409 -19.24537 -18.83602 -17.05143 -16.76472 -16.27928 -15.76245 -15.43428 -15.13549 -14.88754 -14.60512 -14.08438 -13.93762 -13.53738 -13.38863 -13.27489 -12.93774 -12.65662 -12.59385 -12.36966 -12.32970 -12.20198 -11.95262 -11.93824 -11.68019 -11.40400 -11.31455 -11.27074 -10.99546 -10.87277 -10.81576 -10.79704 -10.62807 -10.57847 -10.49926 -10.48179 -10.23412 -9.88663 -9.88013 -9.54373 -8.59333 -8.29331 -6.81856 -5.77719 -3.24997 2.87552 3.25637 3.36862 3.43831 3.44441 4.32021 4.45885 4.52990 4.56619 4.68903 4.83280 4.87429 5.00933 5.05146 5.12413 5.17413 5.22412 5.25425 5.32126 5.35107 5.39420 5.48389 5.54328 5.55969 5.60142 5.60782 5.63597 5.68331 5.71222 5.78428 5.79747 5.87238 5.90874 5.91947 6.02052 6.03476 6.10733 6.20899 6.27452 6.31743 6.40790 6.58140 6.65900 6.79692 6.88027 7.31342 7.67626 7.76741 7.84028 8.33725 8.42914 9.17207 9.80117 10.29385 11.26956 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.045807 B = 0.001874 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.108593 B =14937.711269 C =15017.657635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.094 4.094 4 H 0.069 0.931 5 C -0.150 4.150 6 C -0.115 4.115 7 C -0.120 4.120 8 C -0.104 4.104 9 C -0.135 4.135 10 C 0.521 3.479 11 O -0.550 6.550 12 N -0.614 5.614 13 C 0.100 3.900 14 C -0.151 4.151 15 C 0.173 3.827 16 H 0.078 0.922 17 N -0.585 5.585 18 C 0.158 3.842 19 C -0.262 4.262 20 H 0.070 0.930 21 C 0.006 3.994 22 N -0.903 5.903 23 Si 0.906 3.094 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.086 3.914 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.034 0.966 49 H 0.040 0.960 50 H 0.003 0.997 51 H 0.253 0.747 52 H 0.059 0.941 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.722 -11.005 7.704 26.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.112 4.112 4 H 0.087 0.913 5 C -0.208 4.208 6 C -0.153 4.153 7 C -0.158 4.158 8 C -0.142 4.142 9 C -0.175 4.175 10 C 0.310 3.690 11 O -0.428 6.428 12 N -0.348 5.348 13 C -0.024 4.024 14 C -0.191 4.191 15 C 0.062 3.938 16 H 0.096 0.904 17 N -0.306 5.306 18 C 0.013 3.987 19 C -0.391 4.391 20 H 0.088 0.912 21 C -0.193 4.193 22 N -0.547 5.547 23 Si 0.736 3.264 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.204 1.204 27 C -0.038 4.038 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.096 0.904 48 H 0.052 0.948 49 H 0.058 0.942 50 H 0.022 0.978 51 H 0.063 0.937 52 H 0.078 0.922 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -22.311 -11.538 7.542 26.226 hybrid contribution 0.928 0.514 0.039 1.062 sum -21.383 -11.024 7.581 25.224 Atomic orbital electron populations 1.21828 0.96061 1.01407 1.01836 1.21588 0.95753 0.96559 1.01956 1.21193 0.95648 0.95951 0.98403 0.91298 1.21934 1.01024 1.00660 0.97135 1.21644 0.94573 0.96952 1.02123 1.21667 0.95229 0.96933 1.01948 1.21350 0.94558 0.94862 1.03407 1.21653 0.92164 0.99771 1.03886 1.20376 0.89842 0.82349 0.76448 1.90681 1.70105 1.30873 1.51155 1.48576 1.08692 1.05909 1.71638 1.22363 0.97132 0.82611 1.00275 1.23380 0.96134 0.98840 1.00785 1.21299 0.87937 0.90286 0.94269 0.90421 1.43848 1.17493 1.61016 1.08221 1.20797 0.98439 0.93917 0.85504 1.19220 1.00888 1.25541 0.93475 0.91238 1.25018 0.99488 0.98333 0.96502 1.70076 1.35883 1.45172 1.03584 0.86240 0.84597 0.77948 0.77638 1.21430 1.21752 1.20415 1.22724 0.78875 1.00608 1.01622 0.92544 0.92851 0.93007 0.92076 0.92086 0.92807 0.92412 0.92774 0.91933 0.91927 0.91766 0.92038 0.91306 0.91334 0.89217 0.89281 0.91369 0.91688 0.90652 0.90372 0.94781 0.94171 0.97841 0.93669 0.92245 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.67 37.16 0.36 -0.51 16 2 C -0.12 -0.77 5.40 -26.73 -0.14 -0.91 16 3 C -0.09 -0.62 2.39 -90.62 -0.22 -0.84 16 4 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 5 C -0.15 -0.94 8.70 37.15 0.32 -0.62 16 6 C -0.12 -0.87 4.68 -26.73 -0.13 -1.00 16 7 C -0.12 -0.95 4.97 -26.73 -0.13 -1.08 16 8 C -0.10 -1.09 4.50 -26.73 -0.12 -1.21 16 9 C -0.13 -1.47 4.71 -27.88 -0.13 -1.60 16 10 C 0.52 8.26 7.85 -10.99 -0.09 8.17 16 11 O -0.55 -10.83 16.31 5.56 0.09 -10.74 16 12 N -0.61 -9.84 3.33 -170.51 -0.57 -10.41 16 13 C 0.10 1.31 6.69 -2.53 -0.02 1.29 16 14 C -0.15 -2.51 6.65 -24.59 -0.16 -2.67 16 15 C 0.17 3.40 3.42 -66.09 -0.23 3.18 16 16 H 0.08 1.51 7.93 -51.93 -0.41 1.10 16 17 N -0.59 -14.29 2.93 -171.38 -0.50 -14.79 16 18 C 0.16 3.85 7.70 59.85 0.46 4.31 16 19 C -0.26 -7.04 9.59 -15.06 -0.14 -7.18 16 20 H 0.07 1.82 7.85 -52.48 -0.41 1.41 16 21 C 0.01 0.15 5.06 -17.43 -0.09 0.06 16 22 N -0.90 -25.89 10.86 55.49 0.60 -25.29 16 23 Si 0.91 21.58 29.58 -169.99 -5.03 16.55 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.09 1.62 6.41 -3.06 -0.02 1.60 16 28 H 0.06 0.31 6.57 -51.93 -0.34 -0.03 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.36 6.57 -51.93 -0.34 0.02 16 35 H 0.05 0.31 6.56 -51.93 -0.34 -0.03 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.47 6.57 -51.93 -0.34 0.13 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 41 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 42 H 0.09 0.85 7.85 -51.93 -0.41 0.45 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 0.74 7.48 -51.93 -0.39 0.35 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.07 1.37 7.28 -51.93 -0.38 0.99 16 47 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 48 H 0.03 0.89 7.32 -51.93 -0.38 0.51 16 49 H 0.04 1.06 7.43 -51.93 -0.39 0.67 16 50 H 0.00 0.07 6.30 -51.93 -0.33 -0.26 16 51 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 52 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 53 H 0.07 1.51 6.15 -51.93 -0.32 1.19 16 LS Contribution 404.93 15.07 6.10 6.10 Total: -1.00 -30.70 404.93 -10.02 -40.72 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -10.25 Total: -3.14 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -0.47 Total: 1.00 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -0.47 Total: -50.49 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.70 -10.02 -40.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190370738.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.621 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds