Wall clock time and date at job start Tue Mar 31 2020 10:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46813 * 2 1 4 4 H 1.09002 * 109.47554 * 304.99852 * 3 2 1 5 5 C 1.52993 * 109.47246 * 65.00554 * 3 2 1 6 6 C 1.53007 * 109.46761 * 185.00374 * 3 2 1 7 7 C 1.53001 * 109.46904 * 175.00018 * 6 3 2 8 8 C 1.53007 * 109.46848 * 179.97438 * 7 6 3 9 9 C 1.53001 * 109.46848 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.46948 * 180.02562 * 9 8 7 11 11 O 1.21279 * 119.99998 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99824 * 179.97438 * 10 9 8 13 13 C 1.47425 * 125.65163 * 0.02744 * 12 10 9 14 14 C 1.54906 * 104.83199 * 204.08964 * 13 12 10 15 15 C 1.55153 * 101.58465 * 322.98998 * 14 13 12 16 16 H 1.09000 * 110.71955 * 277.14012 * 15 14 13 17 17 N 1.46494 * 110.72198 * 154.04422 * 15 14 13 18 18 C 1.46505 * 119.99983 * 301.45114 * 17 15 14 19 19 C 1.36933 * 120.00214 * 121.45303 * 17 15 14 20 20 H 1.08003 * 119.99667 * 23.49123 * 19 17 15 21 21 C 1.38815 * 120.00266 * 203.48470 * 19 17 15 22 22 N 1.31620 * 119.99575 * 15.10579 * 21 19 17 23 23 Si 1.86800 * 120.00205 * 195.10240 * 21 19 17 24 24 H 1.48505 * 109.47123 * 90.00184 * 23 21 19 25 25 H 1.48499 * 109.47211 * 210.00180 * 23 21 19 26 26 H 1.48506 * 109.46910 * 330.00227 * 23 21 19 27 27 C 1.47027 * 125.64598 * 179.71431 * 12 10 9 28 28 H 1.09005 * 109.47164 * 299.99737 * 1 2 3 29 29 H 1.09003 * 109.47629 * 59.99533 * 1 2 3 30 30 H 1.08998 * 109.47106 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46676 * 240.00113 * 2 1 3 32 32 H 1.08994 * 109.47038 * 119.99891 * 2 1 3 33 33 H 1.08993 * 109.47498 * 59.99350 * 5 3 2 34 34 H 1.09004 * 109.47043 * 180.02562 * 5 3 2 35 35 H 1.08998 * 109.46945 * 299.99371 * 5 3 2 36 36 H 1.08993 * 109.47360 * 54.99837 * 6 3 2 37 37 H 1.09001 * 109.46728 * 294.99615 * 6 3 2 38 38 H 1.09004 * 109.46982 * 60.00177 * 7 6 3 39 39 H 1.08998 * 109.47434 * 299.99767 * 7 6 3 40 40 H 1.09004 * 109.46728 * 60.00581 * 8 7 6 41 41 H 1.08998 * 109.47369 * 300.00365 * 8 7 6 42 42 H 1.08998 * 109.47434 * 300.00325 * 9 8 7 43 43 H 1.08993 * 109.47260 * 60.00316 * 9 8 7 44 44 H 1.09001 * 110.36355 * 322.92834 * 13 12 10 45 45 H 1.09003 * 110.36650 * 85.24805 * 13 12 10 46 46 H 1.09006 * 111.00496 * 81.06672 * 14 13 12 47 47 H 1.08995 * 111.00347 * 204.91358 * 14 13 12 48 48 H 1.08998 * 109.47113 * 95.21045 * 18 17 15 49 49 H 1.08995 * 109.47242 * 215.21294 * 18 17 15 50 50 H 1.09004 * 109.47307 * 335.21688 * 18 17 15 51 51 H 0.97003 * 119.99872 * 179.97438 * 22 21 19 52 52 H 1.08995 * 109.88311 * 298.39990 * 27 12 10 53 53 H 1.09004 * 109.87984 * 59.56349 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5648 1.4443 -0.1258 7 6 4.0644 2.8850 -0.2512 8 6 5.5894 2.8869 -0.3764 9 6 6.0889 4.3275 -0.5025 10 6 7.5908 4.3293 -0.6264 11 8 8.2015 3.2815 -0.6155 12 7 8.2553 5.4953 -0.7504 13 6 7.6415 6.8353 -0.7787 14 6 8.6637 7.7240 -1.5303 15 6 10.0112 7.1490 -1.0195 16 1 10.2740 7.5818 -0.0542 17 7 11.0776 7.3810 -1.9968 18 6 10.9526 6.8510 -3.3569 19 6 12.1911 8.0931 -1.6392 20 1 12.4792 8.1592 -0.6004 21 6 12.9498 8.7299 -2.6117 22 7 12.4572 8.9068 -3.8194 23 14 14.6697 9.3358 -2.2065 24 1 15.6538 8.2618 -2.4954 25 1 14.9820 10.5288 -3.0337 26 1 14.7407 9.6984 -0.7681 27 6 9.7131 5.6418 -0.8733 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0698 1.5875 2.1491 34 1 1.9982 3.1543 1.3071 35 1 0.5490 2.1252 1.3969 36 1 3.8570 0.8801 -1.0114 37 1 4.0029 0.9836 0.7596 38 1 3.7722 3.4493 0.6344 39 1 3.6263 3.3458 -1.1365 40 1 5.8818 2.3225 -1.2619 41 1 6.0272 2.4262 0.5091 42 1 5.6511 4.7878 -1.3882 43 1 5.7964 4.8923 0.3827 44 1 6.6945 6.8074 -1.3178 45 1 7.4908 7.2051 0.2355 46 1 8.5701 7.6002 -2.6093 47 1 8.5534 8.7709 -1.2478 48 1 10.5457 7.6220 -4.0113 49 1 11.9343 6.5471 -3.7201 50 1 10.2846 5.9897 -3.3513 51 1 12.9872 9.3521 -4.4989 52 1 10.2016 5.2501 0.0189 53 1 10.0661 5.1087 -1.7561 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190370738.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:29 Heat of formation + Delta-G solvation = -64.835398 kcal Electronic energy + Delta-G solvation = -25741.264814 eV Core-core repulsion = 22225.543987 eV Total energy + Delta-G solvation = -3515.720827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.09980 -39.05811 -38.37169 -36.53466 -35.37756 -33.48661 -31.96854 -31.21913 -29.78722 -28.82983 -28.08336 -26.67216 -25.23785 -23.99423 -23.40937 -21.77131 -20.91345 -20.70227 -20.01099 -18.95111 -18.02165 -17.56670 -16.88839 -16.47678 -16.30777 -15.84304 -15.67334 -15.34830 -15.07503 -14.84130 -14.53372 -14.47713 -14.22033 -13.98907 -13.72444 -13.37525 -13.17918 -13.07744 -12.97885 -12.91042 -12.85962 -12.57678 -12.54349 -12.50615 -12.37966 -12.25833 -12.06397 -12.02954 -11.94055 -11.82536 -11.50268 -11.43763 -11.36171 -11.22429 -11.12188 -10.81153 -10.64807 -9.62642 -8.82043 -7.85462 -5.34569 1.46661 1.49132 1.56953 1.65876 2.01983 2.50801 3.27076 3.52000 3.58842 3.78200 3.85919 3.98714 4.01659 4.09124 4.16454 4.21484 4.28224 4.35398 4.44848 4.47722 4.52094 4.63893 4.65367 4.69526 4.70958 4.76284 4.78793 4.87634 4.92847 4.95069 4.99574 5.01654 5.06425 5.13923 5.16662 5.20677 5.26361 5.27482 5.29917 5.33674 5.34454 5.39542 5.40543 5.50933 5.63031 5.63502 5.65242 5.65281 6.30057 6.61127 7.10875 7.18572 7.81872 8.27416 9.17976 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.045807 B = 0.001874 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.108593 B =14937.711269 C =15017.657635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.090 4.090 4 H 0.071 0.929 5 C -0.150 4.150 6 C -0.116 4.116 7 C -0.111 4.111 8 C -0.101 4.101 9 C -0.124 4.124 10 C 0.514 3.486 11 O -0.598 6.598 12 N -0.616 5.616 13 C 0.108 3.892 14 C -0.143 4.143 15 C 0.165 3.835 16 H 0.082 0.918 17 N -0.602 5.602 18 C 0.179 3.821 19 C -0.269 4.269 20 H 0.074 0.926 21 C -0.048 4.048 22 N -0.934 5.934 23 Si 0.968 3.032 24 H -0.291 1.291 25 H -0.294 1.294 26 H -0.266 1.266 27 C 0.097 3.903 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.114 0.886 43 H 0.119 0.881 44 H 0.104 0.896 45 H 0.095 0.905 46 H 0.056 0.944 47 H 0.088 0.912 48 H 0.013 0.987 49 H 0.009 0.991 50 H 0.022 0.978 51 H 0.249 0.751 52 H 0.051 0.949 53 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.130 -10.250 9.189 28.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.108 4.108 4 H 0.089 0.911 5 C -0.207 4.207 6 C -0.153 4.153 7 C -0.148 4.148 8 C -0.139 4.139 9 C -0.163 4.163 10 C 0.305 3.695 11 O -0.479 6.479 12 N -0.350 5.350 13 C -0.013 4.013 14 C -0.183 4.183 15 C 0.056 3.944 16 H 0.100 0.900 17 N -0.323 5.323 18 C 0.034 3.966 19 C -0.399 4.399 20 H 0.091 0.909 21 C -0.244 4.244 22 N -0.580 5.580 23 Si 0.796 3.204 24 H -0.218 1.218 25 H -0.220 1.220 26 H -0.190 1.190 27 C -0.029 4.029 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.132 0.868 43 H 0.138 0.862 44 H 0.123 0.877 45 H 0.113 0.887 46 H 0.075 0.925 47 H 0.106 0.894 48 H 0.031 0.969 49 H 0.028 0.972 50 H 0.040 0.960 51 H 0.058 0.942 52 H 0.070 0.930 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -24.766 -10.776 9.064 28.489 hybrid contribution 1.664 0.202 -0.385 1.720 sum -23.102 -10.574 8.679 26.848 Atomic orbital electron populations 1.21817 0.95428 1.01697 1.02059 1.21594 0.96318 0.96448 1.01645 1.21157 0.94756 0.96133 0.98802 0.91087 1.21928 1.01407 1.00709 0.96615 1.21633 0.95357 0.96856 1.01472 1.21600 0.92991 0.97204 1.03035 1.21308 0.96386 0.94480 1.01710 1.21718 0.87823 1.00441 1.06312 1.21376 0.91821 0.81306 0.74984 1.90663 1.71491 1.32599 1.53176 1.48690 1.07348 1.07428 1.71512 1.22523 0.96989 0.79893 1.01937 1.23218 0.95019 1.00081 0.99999 1.21480 0.88422 0.91025 0.93435 0.90033 1.44005 1.18636 1.60974 1.08709 1.20445 0.96816 0.93728 0.85605 1.19560 1.01873 1.24804 0.93681 0.90852 1.25757 1.02849 0.99214 0.96534 1.70222 1.36953 1.46431 1.04394 0.85256 0.80235 0.76962 0.77911 1.21782 1.22031 1.19020 1.22338 0.81284 0.99326 0.99905 0.92200 0.92709 0.92749 0.92479 0.92372 0.93136 0.91999 0.92222 0.92736 0.92582 0.90418 0.90987 0.93360 0.92961 0.86793 0.86248 0.87744 0.88701 0.92529 0.89387 0.96854 0.97203 0.95997 0.94200 0.93025 0.93942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.67 71.98 0.70 -0.81 16 2 C -0.12 -1.41 5.40 30.59 0.17 -1.24 16 3 C -0.09 -1.03 2.39 -10.79 -0.03 -1.06 16 4 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 5 C -0.15 -1.53 8.70 71.98 0.63 -0.91 16 6 C -0.12 -1.59 4.68 30.60 0.14 -1.44 16 7 C -0.11 -1.45 4.97 30.60 0.15 -1.30 16 8 C -0.10 -1.94 4.50 30.60 0.14 -1.80 16 9 C -0.12 -2.26 4.71 29.85 0.14 -2.12 16 10 C 0.51 15.41 7.85 87.66 0.69 16.10 16 11 O -0.60 -23.67 16.31 -3.03 -0.05 -23.72 16 12 N -0.62 -18.48 3.33 -811.76 -2.70 -21.18 16 13 C 0.11 2.42 6.69 86.85 0.58 3.00 16 14 C -0.14 -4.46 6.65 31.98 0.21 -4.24 16 15 C 0.16 6.39 3.42 46.18 0.16 6.55 16 16 H 0.08 3.08 7.93 -2.39 -0.02 3.06 16 17 N -0.60 -29.75 2.93 -696.14 -2.04 -31.79 16 18 C 0.18 9.00 7.70 127.77 0.98 9.98 16 19 C -0.27 -14.57 9.59 84.03 0.81 -13.77 16 20 H 0.07 3.83 7.85 -2.91 -0.02 3.81 16 21 C -0.05 -2.65 5.06 84.86 0.43 -2.22 16 22 N -0.93 -54.78 10.86 21.65 0.24 -54.55 16 23 Si 0.97 44.75 29.58 68.60 2.03 46.78 16 24 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 25 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 C 0.10 3.62 6.41 86.73 0.56 4.18 16 28 H 0.06 0.54 6.57 -2.38 -0.02 0.53 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.06 0.58 6.57 -2.38 -0.02 0.57 16 35 H 0.06 0.55 6.56 -2.39 -0.02 0.53 16 36 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 0.84 6.57 -2.38 -0.02 0.83 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.05 1.12 8.10 -2.38 -0.02 1.10 16 41 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 42 H 0.11 1.62 7.85 -2.39 -0.02 1.60 16 43 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.10 1.68 7.48 -2.39 -0.02 1.66 16 45 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.06 1.99 7.28 -2.38 -0.02 1.97 16 47 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 48 H 0.01 0.72 7.32 -2.39 -0.02 0.70 16 49 H 0.01 0.51 7.43 -2.39 -0.02 0.49 16 50 H 0.02 0.99 6.30 -2.39 -0.02 0.97 16 51 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 52 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 53 H 0.04 1.83 6.15 -2.39 -0.01 1.81 16 Total: -1.00 -68.91 404.93 4.76 -64.15 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.84 Total: 11.41 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 6.45 Total: 8.91 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -4.51 Total: -107.52 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.05 Total: -23.72 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -68.91 4.76 -64.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190370738.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.685 kcal (2) G-P(sol) polarization free energy of solvation -68.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds