Wall clock time and date at job start Tue Mar 31 2020 10:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46956 * 2 1 4 4 H 1.09002 * 109.46961 * 54.91102 * 3 2 1 5 5 C 1.50701 * 109.47098 * 174.90636 * 3 2 1 6 6 H 1.07997 * 119.99727 * 120.00300 * 5 3 2 7 7 C 1.37876 * 120.00070 * 299.99975 * 5 3 2 8 8 N 1.31513 * 120.00168 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99855 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47754 * 89.99632 * 9 7 5 11 11 H 1.48504 * 109.46662 * 209.99760 * 9 7 5 12 12 H 1.48496 * 109.47162 * 329.99136 * 9 7 5 13 13 N 1.46895 * 109.47349 * 294.90866 * 3 2 1 14 14 C 1.46899 * 111.00210 * 156.26012 * 13 3 2 15 15 H 1.08997 * 109.47078 * 34.37337 * 14 13 3 16 16 C 1.53002 * 109.47400 * 154.37927 * 14 13 3 17 17 C 1.52998 * 109.47180 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.46857 * 299.99701 * 17 16 14 19 19 H 1.09007 * 109.46952 * 299.99928 * 18 17 16 20 20 N 1.46506 * 109.46952 * 180.02562 * 18 17 16 21 21 C 1.34774 * 120.00298 * 85.00111 * 20 18 17 22 22 O 1.21284 * 119.99851 * 359.97438 * 21 20 18 23 23 C 1.50696 * 120.00136 * 179.97438 * 21 20 18 24 24 C 1.52998 * 109.47133 * 179.97438 * 23 21 20 25 25 C 1.52993 * 109.47395 * 300.00101 * 23 21 20 26 26 C 1.53003 * 109.47077 * 59.99842 * 23 21 20 27 27 C 1.52996 * 109.47580 * 60.00219 * 18 17 16 28 28 C 1.53002 * 109.47042 * 274.37262 * 14 13 3 29 29 H 1.08999 * 109.47295 * 295.41138 * 1 2 3 30 30 H 1.09003 * 109.47111 * 55.41343 * 1 2 3 31 31 H 1.08997 * 109.47328 * 175.41069 * 1 2 3 32 32 H 1.08997 * 109.46977 * 240.00564 * 2 1 3 33 33 H 1.08997 * 109.46966 * 119.99918 * 2 1 3 34 34 H 0.96995 * 119.99980 * 179.97438 * 8 7 5 35 35 H 1.00902 * 111.00418 * 280.21251 * 13 3 2 36 36 H 1.08997 * 109.47486 * 59.99660 * 16 14 13 37 37 H 1.09005 * 109.46446 * 299.99820 * 16 14 13 38 38 H 1.08996 * 109.46981 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.47315 * 59.99400 * 17 16 14 40 40 H 0.97000 * 119.99408 * 264.99208 * 20 18 17 41 41 H 1.08997 * 109.47033 * 60.00568 * 24 23 21 42 42 H 1.08998 * 109.47140 * 179.97438 * 24 23 21 43 43 H 1.08999 * 109.47750 * 300.00025 * 24 23 21 44 44 H 1.08997 * 109.47519 * 59.99354 * 25 23 21 45 45 H 1.08998 * 109.47422 * 180.02562 * 25 23 21 46 46 H 1.09009 * 109.46859 * 299.99956 * 25 23 21 47 47 H 1.09007 * 109.46990 * 59.99748 * 26 23 21 48 48 H 1.09001 * 109.47512 * 180.02562 * 26 23 21 49 49 H 1.09001 * 109.47216 * 300.00336 * 26 23 21 50 50 H 1.08996 * 109.46966 * 59.99430 * 27 18 17 51 51 H 1.08996 * 109.47395 * 180.02562 * 27 18 17 52 52 H 1.09009 * 109.46798 * 60.00235 * 28 14 13 53 53 H 1.08997 * 109.47780 * 300.00520 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6041 1.9820 0.8409 5 6 3.5417 1.4444 0.1261 6 1 4.1481 1.8886 -0.6493 7 6 4.1414 0.8792 1.2315 8 7 5.4519 0.8804 1.3414 9 14 3.0924 0.1103 2.5724 10 1 2.8720 -1.3259 2.2662 11 1 3.7878 0.2369 3.8784 12 1 1.7837 0.8088 2.6387 13 7 1.6533 2.0986 -1.2561 14 6 1.6032 3.5578 -1.0942 15 1 2.3774 3.8725 -0.3944 16 6 1.8365 4.2296 -2.4489 17 6 1.7850 5.7494 -2.2801 18 6 0.4130 6.1561 -1.7387 19 1 -0.3615 5.8418 -2.4384 20 7 0.3634 7.6115 -1.5776 21 6 0.0387 8.3948 -2.6252 22 8 -0.2121 7.8949 -3.7014 23 6 -0.0128 9.8917 -2.4593 24 6 -0.4025 10.5391 -3.7896 25 6 -1.0498 10.2514 -1.3934 26 6 1.3622 10.4045 -2.0266 27 6 0.1796 5.4844 -0.3840 28 6 0.2309 3.9641 -0.5531 29 1 -0.3634 0.4410 0.9282 30 1 -0.3633 0.5834 -0.8461 31 1 -0.3634 -1.0243 -0.0822 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.8738 0.4830 2.1192 35 1 2.2762 1.8393 -2.0063 36 1 1.0623 3.9150 -3.1487 37 1 2.8141 3.9401 -2.8344 38 1 1.9507 6.2280 -3.2453 39 1 2.5594 6.0638 -1.5805 40 1 0.5643 8.0112 -0.7169 41 1 -1.3820 10.1739 -4.0983 42 1 -0.4403 11.6218 -3.6696 43 1 0.3365 10.2829 -4.5488 44 1 -0.7718 9.7901 -0.4458 45 1 -1.0874 11.3341 -1.2738 46 1 -2.0294 9.8860 -1.7017 47 1 2.1011 10.1482 -2.7860 48 1 1.3249 11.4872 -1.9061 49 1 1.6403 9.9433 -1.0789 50 1 0.9541 5.7987 0.3156 51 1 -0.7980 5.7738 0.0015 52 1 0.0647 3.4855 0.4120 53 1 -0.5433 3.6494 -1.2528 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162817.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:54 Heat of formation + Delta-G solvation = -73.074338 kcal Electronic energy + Delta-G solvation = -27203.913444 eV Core-core repulsion = 23687.835350 eV Total energy + Delta-G solvation = -3516.078094 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.45541 -38.52659 -36.21268 -35.67604 -33.96820 -32.03595 -31.17464 -30.55664 -28.10649 -27.69954 -27.33840 -26.05111 -23.38377 -22.65508 -22.39204 -21.06734 -19.97301 -19.61995 -19.01074 -16.96031 -16.93451 -16.37115 -15.35610 -15.26464 -14.95485 -14.54962 -14.24012 -14.18547 -13.93394 -13.57907 -13.44623 -13.21171 -12.79315 -12.68413 -12.60025 -12.51261 -12.32918 -12.16649 -12.03462 -11.98521 -11.76995 -11.62510 -11.35929 -11.27758 -11.24984 -11.03210 -10.88193 -10.76939 -10.70407 -10.45096 -10.07554 -9.86912 -9.72658 -9.65897 -9.43961 -9.17251 -9.00792 -8.58318 -7.33496 -6.13804 -4.14400 2.57309 3.07585 3.24680 3.34853 3.37150 4.34416 4.35786 4.44523 4.55567 4.78682 4.87479 4.96368 5.00782 5.19826 5.20110 5.27366 5.36960 5.38715 5.46316 5.48737 5.52555 5.55825 5.60249 5.68115 5.71733 5.75956 5.78864 5.87988 5.99309 6.00706 6.06603 6.09584 6.12156 6.18604 6.26622 6.32905 6.41332 6.47553 6.53365 6.63906 6.70739 6.75361 6.82782 7.01476 7.13524 7.29340 7.44350 7.58082 8.08066 8.16948 8.40696 8.50282 8.89427 9.50169 10.99208 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.022872 B = 0.002891 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.885459 B = 9681.972950 C = 9975.625010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.184 3.816 4 H 0.032 0.968 5 C -0.545 4.545 6 H 0.072 0.928 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.265 1.265 13 N -0.678 5.678 14 C 0.090 3.910 15 H 0.052 0.948 16 C -0.115 4.115 17 C -0.122 4.122 18 C 0.146 3.854 19 H 0.087 0.913 20 N -0.724 5.724 21 C 0.521 3.479 22 O -0.540 6.540 23 C -0.088 4.088 24 C -0.127 4.127 25 C -0.140 4.140 26 C -0.141 4.141 27 C -0.124 4.124 28 C -0.100 4.100 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.032 0.968 32 H 0.056 0.944 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.335 0.665 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.397 0.603 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.067 0.933 49 H 0.060 0.940 50 H 0.066 0.934 51 H 0.063 0.937 52 H 0.065 0.935 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.009 17.824 -4.192 21.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C 0.075 3.925 4 H 0.050 0.950 5 C -0.583 4.583 6 H 0.090 0.910 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.205 1.205 11 H -0.227 1.227 12 H -0.190 1.190 13 N -0.307 5.307 14 C -0.020 4.020 15 H 0.070 0.930 16 C -0.153 4.153 17 C -0.162 4.162 18 C 0.042 3.958 19 H 0.105 0.895 20 N -0.374 5.374 21 C 0.307 3.693 22 O -0.416 6.416 23 C -0.092 4.092 24 C -0.185 4.185 25 C -0.198 4.198 26 C -0.198 4.198 27 C -0.163 4.163 28 C -0.139 4.139 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.152 0.848 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.231 0.769 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.086 0.914 49 H 0.079 0.921 50 H 0.085 0.915 51 H 0.082 0.918 52 H 0.084 0.916 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.720 17.309 -4.755 22.001 hybrid contribution 0.835 -0.175 1.373 1.617 sum -11.885 17.134 -3.382 21.125 Atomic orbital electron populations 1.21743 0.97591 0.99485 1.01290 1.21817 0.93839 0.99481 1.00296 1.19583 0.94052 0.90513 0.88371 0.94998 1.21768 0.90663 1.38894 1.07001 0.91033 1.25012 0.94742 0.95333 0.97959 1.69919 1.08914 1.45161 1.29676 0.86819 0.80592 0.79916 0.80678 1.20500 1.22705 1.18962 1.60758 1.56230 1.05277 1.08474 1.21364 0.95875 0.89312 0.95443 0.92962 1.21645 1.01966 0.93701 0.98018 1.21841 0.96558 0.96611 1.01153 1.21066 0.98433 0.78269 0.98023 0.89516 1.46171 1.70598 1.07425 1.13245 1.20545 0.75883 0.88870 0.83998 1.90696 1.48803 1.75847 1.26257 1.20832 0.97810 0.91984 0.98529 1.21650 1.02543 0.99392 0.94866 1.21862 0.98228 1.02284 0.97388 1.21870 0.94589 1.01682 1.01686 1.21820 1.01700 0.96991 0.95772 1.21465 0.98310 0.92425 1.01706 0.94414 0.91653 0.94901 0.92484 0.93867 0.92683 0.84794 0.91561 0.91813 0.91917 0.91858 0.76858 0.91977 0.92164 0.91915 0.92098 0.91418 0.92054 0.91954 0.91415 0.92065 0.91509 0.91794 0.91645 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.85 37.16 0.37 -2.25 16 2 C -0.12 -2.51 5.11 -26.73 -0.14 -2.65 16 3 C 0.18 4.16 1.39 -68.87 -0.10 4.07 16 4 H 0.03 0.76 6.22 -51.93 -0.32 0.44 16 5 C -0.54 -14.72 8.79 -34.44 -0.30 -15.02 16 6 H 0.07 2.11 8.00 -52.49 -0.42 1.69 16 7 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 8 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 9 Si 0.89 21.82 24.41 -169.99 -4.15 17.67 16 10 H -0.28 -6.71 6.83 56.52 0.39 -6.32 16 11 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.26 -6.22 6.53 56.52 0.37 -5.85 16 13 N -0.68 -13.07 5.43 -100.95 -0.55 -13.61 16 14 C 0.09 1.54 2.30 -67.71 -0.16 1.39 16 15 H 0.05 1.04 7.58 -51.93 -0.39 0.65 16 16 C -0.11 -1.72 5.19 -26.73 -0.14 -1.86 16 17 C -0.12 -1.65 5.49 -26.73 -0.15 -1.80 16 18 C 0.15 1.79 2.45 -67.93 -0.17 1.63 16 19 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 20 N -0.72 -7.48 4.86 -53.80 -0.26 -7.74 16 21 C 0.52 6.07 6.45 -10.99 -0.07 6.00 16 22 O -0.54 -8.48 15.64 5.55 0.09 -8.39 16 23 C -0.09 -0.73 0.87 -155.67 -0.14 -0.87 16 24 C -0.13 -1.08 7.76 37.16 0.29 -0.79 16 25 C -0.14 -0.90 8.37 37.15 0.31 -0.59 16 26 C -0.14 -0.97 8.37 37.16 0.31 -0.66 16 27 C -0.12 -1.49 5.39 -26.71 -0.14 -1.63 16 28 C -0.10 -1.48 5.42 -26.70 -0.14 -1.63 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 1.14 7.63 -51.93 -0.40 0.75 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.04 1.00 3.21 -51.93 -0.17 0.83 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 35 H 0.33 6.59 8.06 -39.29 -0.32 6.27 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 1.00 8.12 -51.93 -0.42 0.57 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.40 3.15 7.44 -40.82 -0.30 2.85 16 41 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 44 H 0.06 0.34 7.56 -51.93 -0.39 -0.05 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.06 0.38 7.56 -51.93 -0.39 -0.02 16 50 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 52 H 0.06 1.05 7.46 -51.92 -0.39 0.66 16 53 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 398.34 15.07 6.00 6.00 Total: -1.00 -30.84 398.34 -8.81 -39.65 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -10.25 Total: 7.49 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -0.46 Total: -14.71 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -0.04 Total: -47.70 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.09 Total: -8.39 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.15 Total: 17.67 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.84 -8.81 -39.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162817.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.429 kcal (2) G-P(sol) polarization free energy of solvation -30.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds