Wall clock time and date at job start Tue Mar 31 2020 10:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46956 * 2 1 4 4 H 1.09002 * 109.46961 * 54.91102 * 3 2 1 5 5 C 1.50701 * 109.47098 * 174.90636 * 3 2 1 6 6 H 1.07997 * 119.99727 * 120.00300 * 5 3 2 7 7 C 1.37876 * 120.00070 * 299.99975 * 5 3 2 8 8 N 1.31513 * 120.00168 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99855 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47754 * 89.99632 * 9 7 5 11 11 H 1.48504 * 109.46662 * 209.99760 * 9 7 5 12 12 H 1.48496 * 109.47162 * 329.99136 * 9 7 5 13 13 N 1.46895 * 109.47349 * 294.90866 * 3 2 1 14 14 C 1.46899 * 111.00210 * 156.26012 * 13 3 2 15 15 H 1.08997 * 109.47078 * 34.37337 * 14 13 3 16 16 C 1.53002 * 109.47400 * 154.37927 * 14 13 3 17 17 C 1.52998 * 109.47180 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.46857 * 299.99701 * 17 16 14 19 19 H 1.09007 * 109.46952 * 299.99928 * 18 17 16 20 20 N 1.46506 * 109.46952 * 180.02562 * 18 17 16 21 21 C 1.34774 * 120.00298 * 85.00111 * 20 18 17 22 22 O 1.21284 * 119.99851 * 359.97438 * 21 20 18 23 23 C 1.50696 * 120.00136 * 179.97438 * 21 20 18 24 24 C 1.52998 * 109.47133 * 179.97438 * 23 21 20 25 25 C 1.52993 * 109.47395 * 300.00101 * 23 21 20 26 26 C 1.53003 * 109.47077 * 59.99842 * 23 21 20 27 27 C 1.52996 * 109.47580 * 60.00219 * 18 17 16 28 28 C 1.53002 * 109.47042 * 274.37262 * 14 13 3 29 29 H 1.08999 * 109.47295 * 295.41138 * 1 2 3 30 30 H 1.09003 * 109.47111 * 55.41343 * 1 2 3 31 31 H 1.08997 * 109.47328 * 175.41069 * 1 2 3 32 32 H 1.08997 * 109.46977 * 240.00564 * 2 1 3 33 33 H 1.08997 * 109.46966 * 119.99918 * 2 1 3 34 34 H 0.96995 * 119.99980 * 179.97438 * 8 7 5 35 35 H 1.00902 * 111.00418 * 280.21251 * 13 3 2 36 36 H 1.08997 * 109.47486 * 59.99660 * 16 14 13 37 37 H 1.09005 * 109.46446 * 299.99820 * 16 14 13 38 38 H 1.08996 * 109.46981 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.47315 * 59.99400 * 17 16 14 40 40 H 0.97000 * 119.99408 * 264.99208 * 20 18 17 41 41 H 1.08997 * 109.47033 * 60.00568 * 24 23 21 42 42 H 1.08998 * 109.47140 * 179.97438 * 24 23 21 43 43 H 1.08999 * 109.47750 * 300.00025 * 24 23 21 44 44 H 1.08997 * 109.47519 * 59.99354 * 25 23 21 45 45 H 1.08998 * 109.47422 * 180.02562 * 25 23 21 46 46 H 1.09009 * 109.46859 * 299.99956 * 25 23 21 47 47 H 1.09007 * 109.46990 * 59.99748 * 26 23 21 48 48 H 1.09001 * 109.47512 * 180.02562 * 26 23 21 49 49 H 1.09001 * 109.47216 * 300.00336 * 26 23 21 50 50 H 1.08996 * 109.46966 * 59.99430 * 27 18 17 51 51 H 1.08996 * 109.47395 * 180.02562 * 27 18 17 52 52 H 1.09009 * 109.46798 * 60.00235 * 28 14 13 53 53 H 1.08997 * 109.47780 * 300.00520 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6041 1.9820 0.8409 5 6 3.5417 1.4444 0.1261 6 1 4.1481 1.8886 -0.6493 7 6 4.1414 0.8792 1.2315 8 7 5.4519 0.8804 1.3414 9 14 3.0924 0.1103 2.5724 10 1 2.8720 -1.3259 2.2662 11 1 3.7878 0.2369 3.8784 12 1 1.7837 0.8088 2.6387 13 7 1.6533 2.0986 -1.2561 14 6 1.6032 3.5578 -1.0942 15 1 2.3774 3.8725 -0.3944 16 6 1.8365 4.2296 -2.4489 17 6 1.7850 5.7494 -2.2801 18 6 0.4130 6.1561 -1.7387 19 1 -0.3615 5.8418 -2.4384 20 7 0.3634 7.6115 -1.5776 21 6 0.0387 8.3948 -2.6252 22 8 -0.2121 7.8949 -3.7014 23 6 -0.0128 9.8917 -2.4593 24 6 -0.4025 10.5391 -3.7896 25 6 -1.0498 10.2514 -1.3934 26 6 1.3622 10.4045 -2.0266 27 6 0.1796 5.4844 -0.3840 28 6 0.2309 3.9641 -0.5531 29 1 -0.3634 0.4410 0.9282 30 1 -0.3633 0.5834 -0.8461 31 1 -0.3634 -1.0243 -0.0822 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.8738 0.4830 2.1192 35 1 2.2762 1.8393 -2.0063 36 1 1.0623 3.9150 -3.1487 37 1 2.8141 3.9401 -2.8344 38 1 1.9507 6.2280 -3.2453 39 1 2.5594 6.0638 -1.5805 40 1 0.5643 8.0112 -0.7169 41 1 -1.3820 10.1739 -4.0983 42 1 -0.4403 11.6218 -3.6696 43 1 0.3365 10.2829 -4.5488 44 1 -0.7718 9.7901 -0.4458 45 1 -1.0874 11.3341 -1.2738 46 1 -2.0294 9.8860 -1.7017 47 1 2.1011 10.1482 -2.7860 48 1 1.3249 11.4872 -1.9061 49 1 1.6403 9.9433 -1.0789 50 1 0.9541 5.7987 0.3156 51 1 -0.7980 5.7738 0.0015 52 1 0.0647 3.4855 0.4120 53 1 -0.5433 3.6494 -1.2528 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162817.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:53 Heat of formation + Delta-G solvation = -93.388105 kcal Electronic energy + Delta-G solvation = -27204.794315 eV Core-core repulsion = 23687.835350 eV Total energy + Delta-G solvation = -3516.958965 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.39457 -39.77425 -37.66176 -36.53568 -35.26803 -34.06237 -32.53601 -31.74300 -29.56902 -28.20239 -28.14562 -27.58278 -24.62779 -23.94185 -23.77426 -22.24442 -21.39004 -21.05477 -20.00216 -19.00869 -17.74848 -17.37995 -17.05611 -16.48824 -16.17706 -15.76331 -15.43145 -15.18863 -15.10161 -14.79252 -14.70411 -14.43920 -14.34940 -14.00292 -13.83821 -13.44335 -13.29829 -13.20791 -13.17140 -13.05293 -12.93894 -12.84010 -12.61451 -12.46839 -12.38214 -12.17926 -12.06230 -11.99335 -11.88874 -11.82740 -11.62877 -11.41014 -11.29223 -11.18960 -11.01476 -10.68994 -10.58918 -10.01819 -9.03958 -8.33099 -6.37599 1.29941 1.33867 1.44866 1.67055 2.19768 2.29535 3.02760 3.46714 3.62292 3.72662 3.80436 3.86872 3.95873 4.19510 4.25062 4.29963 4.33619 4.41158 4.48334 4.51792 4.55733 4.56951 4.68450 4.71944 4.73955 4.83348 4.83859 4.87920 4.95832 4.96237 5.00371 5.02602 5.06918 5.10945 5.16601 5.20505 5.22834 5.24624 5.31367 5.34855 5.35881 5.37551 5.47010 5.50572 5.56268 5.61508 5.66937 6.12693 6.45854 6.59869 6.67298 6.82343 7.29514 7.31547 8.83308 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.022872 B = 0.002891 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.885459 B = 9681.972950 C = 9975.625010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.119 4.119 3 C 0.193 3.807 4 H 0.028 0.972 5 C -0.543 4.543 6 H 0.031 0.969 7 C 0.015 3.985 8 N -0.948 5.948 9 Si 0.950 3.050 10 H -0.269 1.269 11 H -0.301 1.301 12 H -0.244 1.244 13 N -0.667 5.667 14 C 0.091 3.909 15 H 0.020 0.980 16 C -0.107 4.107 17 C -0.115 4.115 18 C 0.154 3.846 19 H 0.072 0.928 20 N -0.712 5.712 21 C 0.516 3.484 22 O -0.586 6.586 23 C -0.084 4.084 24 C -0.127 4.127 25 C -0.137 4.137 26 C -0.139 4.139 27 C -0.114 4.114 28 C -0.095 4.095 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.031 0.969 34 H 0.264 0.736 35 H 0.330 0.670 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.412 0.588 41 H 0.047 0.953 42 H 0.085 0.915 43 H 0.044 0.956 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.052 0.948 47 H 0.047 0.953 48 H 0.088 0.912 49 H 0.070 0.930 50 H 0.071 0.929 51 H 0.088 0.912 52 H 0.057 0.943 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.570 19.057 -2.841 24.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.157 4.157 3 C 0.083 3.917 4 H 0.046 0.954 5 C -0.582 4.582 6 H 0.049 0.951 7 C -0.183 4.183 8 N -0.589 5.589 9 Si 0.777 3.223 10 H -0.195 1.195 11 H -0.229 1.229 12 H -0.168 1.168 13 N -0.296 5.296 14 C -0.020 4.020 15 H 0.039 0.961 16 C -0.146 4.146 17 C -0.154 4.154 18 C 0.049 3.951 19 H 0.090 0.910 20 N -0.363 5.363 21 C 0.304 3.696 22 O -0.466 6.466 23 C -0.087 4.087 24 C -0.184 4.184 25 C -0.195 4.195 26 C -0.197 4.197 27 C -0.152 4.152 28 C -0.133 4.133 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.147 0.853 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.249 0.751 41 H 0.067 0.933 42 H 0.104 0.896 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.106 0.894 46 H 0.071 0.929 47 H 0.066 0.934 48 H 0.107 0.893 49 H 0.089 0.911 50 H 0.090 0.910 51 H 0.106 0.894 52 H 0.075 0.925 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.302 18.567 -3.389 24.297 hybrid contribution 1.714 -0.510 0.837 1.974 sum -13.587 18.057 -2.552 22.742 Atomic orbital electron populations 1.21648 0.94462 1.01183 1.01877 1.21768 0.96606 0.97826 0.99480 1.19417 0.90812 0.91893 0.89582 0.95416 1.22097 0.93039 1.37423 1.05602 0.95081 1.25856 0.95765 0.96124 1.00567 1.70067 1.10954 1.47059 1.30772 0.85832 0.79601 0.79556 0.77315 1.19496 1.22926 1.16799 1.60832 1.55254 1.06610 1.06874 1.21434 0.96660 0.87994 0.95862 0.96141 1.21546 1.01378 0.94745 0.96896 1.21751 0.97642 0.95219 1.00805 1.20832 0.96819 0.79580 0.97867 0.90958 1.46030 1.69933 1.06502 1.13860 1.21251 0.74673 0.90422 0.83291 1.90676 1.50890 1.76919 1.28070 1.20867 0.99463 0.89186 0.99173 1.21663 1.01155 1.00995 0.94628 1.21875 0.96913 1.03734 0.96942 1.21889 0.93063 1.03119 1.01583 1.21729 1.03258 0.94769 0.95476 1.21392 0.96412 0.94434 1.01086 0.93834 0.91044 0.92695 0.92976 0.95096 0.92662 0.85349 0.91025 0.93141 0.92765 0.91927 0.75084 0.93342 0.89588 0.93698 0.90875 0.89394 0.92921 0.93396 0.89281 0.91061 0.91043 0.89373 0.92452 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 9.85 71.98 0.71 -3.76 16 2 C -0.12 -4.93 5.11 30.60 0.16 -4.78 16 3 C 0.19 8.66 1.39 44.17 0.06 8.72 16 4 H 0.03 1.29 6.22 -2.39 -0.01 1.28 16 5 C -0.54 -30.16 8.79 25.60 0.22 -29.94 16 6 H 0.03 1.93 8.00 -2.91 -0.02 1.90 16 7 C 0.01 0.85 5.45 84.65 0.46 1.31 16 8 N -0.95 -59.02 13.96 21.45 0.30 -58.72 16 9 Si 0.95 44.79 24.41 68.60 1.67 46.46 16 10 H -0.27 -12.21 6.83 99.48 0.68 -11.53 16 11 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 12 H -0.24 -10.61 6.53 99.48 0.65 -9.96 16 13 N -0.67 -25.72 5.43 -473.31 -2.57 -28.29 16 14 C 0.09 3.10 2.30 44.92 0.10 3.20 16 15 H 0.02 0.84 7.58 -2.39 -0.02 0.82 16 16 C -0.11 -3.25 5.19 30.59 0.16 -3.10 16 17 C -0.11 -3.10 5.49 30.59 0.17 -2.93 16 18 C 0.15 3.59 2.45 44.99 0.11 3.70 16 19 H 0.07 1.97 7.58 -2.38 -0.02 1.95 16 20 N -0.71 -13.54 4.86 -442.53 -2.15 -15.69 16 21 C 0.52 11.55 6.45 87.66 0.56 12.11 16 22 O -0.59 -18.56 15.64 -3.04 -0.05 -18.61 16 23 C -0.08 -1.24 0.87 -52.93 -0.05 -1.28 16 24 C -0.13 -2.03 7.76 71.98 0.56 -1.47 16 25 C -0.14 -1.37 8.37 71.98 0.60 -0.76 16 26 C -0.14 -1.59 8.37 71.98 0.60 -0.98 16 27 C -0.11 -2.47 5.39 30.61 0.17 -2.31 16 28 C -0.09 -2.64 5.42 30.61 0.17 -2.48 16 29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 2.28 7.63 -2.39 -0.02 2.26 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.03 1.36 3.21 -2.39 -0.01 1.35 16 34 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 35 H 0.33 13.29 8.06 -89.69 -0.72 12.56 16 36 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.05 1.64 8.12 -2.38 -0.02 1.63 16 38 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.41 5.44 7.44 -92.71 -0.69 4.75 16 41 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 42 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.04 0.86 8.10 -2.39 -0.02 0.84 16 44 H 0.07 0.56 7.56 -2.39 -0.02 0.54 16 45 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 47 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 48 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 49 H 0.07 0.67 7.56 -2.39 -0.02 0.65 16 50 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 52 H 0.06 1.72 7.46 -2.38 -0.02 1.70 16 53 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -69.39 398.34 1.34 -68.05 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: -0.63 Total: 31.53 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 4.77 Total: -24.73 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -4.42 Total: -102.70 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.05 Total: -18.61 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.67 Total: 46.46 kcal Total: -69.39 1.34 -68.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162817.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.341 kcal (2) G-P(sol) polarization free energy of solvation -69.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds