Wall clock time and date at job start Tue Mar 31 2020 11:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47514 * 2 1 4 4 C 1.53000 * 109.46867 * 240.00229 * 2 1 3 5 5 C 1.52998 * 109.47202 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47143 * 60.00121 * 5 4 2 7 7 C 1.53000 * 109.46973 * 300.00019 * 6 5 4 8 8 H 1.08991 * 109.47561 * 299.99640 * 7 6 5 9 9 C 1.53003 * 109.47086 * 179.97438 * 7 6 5 10 10 N 1.46501 * 109.47091 * 65.00069 * 9 7 6 11 11 C 1.34777 * 120.00131 * 179.97438 * 10 9 7 12 12 O 1.21580 * 119.99914 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99736 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99897 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47378 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.46961 * 300.00149 * 15 14 13 17 17 C 1.52994 * 109.47187 * 59.99866 * 15 14 13 18 18 C 1.50703 * 109.47255 * 180.02562 * 15 14 13 19 19 H 1.07997 * 119.99962 * 357.00436 * 18 15 14 20 20 C 1.37874 * 120.00023 * 177.00574 * 18 15 14 21 21 N 1.31519 * 119.99945 * 5.53921 * 20 18 15 22 22 Si 1.86803 * 119.99906 * 185.54128 * 20 18 15 23 23 H 1.48501 * 109.46905 * 85.00250 * 22 20 18 24 24 H 1.48501 * 109.46752 * 204.99960 * 22 20 18 25 25 H 1.48491 * 109.46953 * 324.99642 * 22 20 18 26 26 C 1.52998 * 109.47202 * 60.00017 * 7 6 5 27 27 H 1.08998 * 109.47271 * 179.97438 * 26 7 6 28 28 C 1.53009 * 109.47197 * 59.99740 * 26 7 6 29 29 H 1.08998 * 109.46935 * 299.99475 * 1 2 3 30 30 H 1.08996 * 109.47292 * 59.99689 * 1 2 3 31 31 H 1.09004 * 109.47164 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47728 * 299.99888 * 4 2 1 33 33 H 1.08996 * 109.47098 * 59.99963 * 4 2 1 34 34 H 1.09004 * 109.47380 * 179.97438 * 5 4 2 35 35 H 1.08998 * 109.47554 * 300.00499 * 5 4 2 36 36 H 1.09005 * 109.47335 * 180.02562 * 6 5 4 37 37 H 1.09004 * 109.47253 * 59.99899 * 6 5 4 38 38 H 1.09001 * 109.47243 * 185.00266 * 9 7 6 39 39 H 1.09003 * 109.47423 * 305.00303 * 9 7 6 40 40 H 0.97002 * 119.99805 * 0.02562 * 10 9 7 41 41 H 0.97002 * 120.00200 * 0.02562 * 13 11 10 42 42 H 1.09003 * 109.47511 * 300.00116 * 14 13 11 43 43 H 1.08998 * 109.46937 * 60.00002 * 14 13 11 44 44 H 1.08997 * 109.46815 * 53.93108 * 16 15 14 45 45 H 1.08994 * 109.47094 * 173.93614 * 16 15 14 46 46 H 1.09002 * 109.46950 * 293.93013 * 16 15 14 47 47 H 1.09000 * 109.47205 * 59.99952 * 17 15 14 48 48 H 1.08995 * 109.47477 * 179.97438 * 17 15 14 49 49 H 1.09004 * 109.47560 * 300.00219 * 17 15 14 50 50 H 0.96995 * 119.99705 * 179.97438 * 21 20 18 51 51 H 1.08996 * 109.46985 * 60.00196 * 28 26 7 52 52 H 1.08996 * 109.47085 * 180.02562 * 28 26 7 53 53 H 1.08998 * 109.46982 * 300.00142 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5699 -0.7207 -1.2497 6 6 4.0805 -1.4417 -0.0005 7 6 3.5706 -0.7205 1.2488 8 1 3.9335 0.3072 1.2487 9 6 4.0806 -1.4418 2.4980 10 7 5.5407 -1.3384 2.5597 11 6 6.2137 -1.9032 3.5817 12 8 5.6091 -2.4989 4.4523 13 7 7.5568 -1.8076 3.6386 14 6 8.2885 -2.4220 4.7492 15 6 9.7872 -2.1680 4.5752 16 6 10.2581 -2.7794 3.2540 17 6 10.0509 -0.6610 4.5624 18 6 10.5398 -2.8005 5.7174 19 1 10.0000 -3.2888 6.5152 20 6 11.9176 -2.7558 5.7438 21 7 12.5709 -2.0689 4.8322 22 14 12.8564 -3.6710 7.0745 23 1 13.0521 -5.0834 6.6598 24 1 14.1789 -3.0273 7.2789 25 1 12.0845 -3.6296 8.3423 26 6 2.0406 -0.7210 1.2492 27 1 1.6773 -0.2076 2.1394 28 6 1.5310 -2.1637 1.2494 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6766 -1.7489 -1.2494 33 1 1.6766 -0.2074 -2.1392 34 1 3.9332 -1.2349 -2.1395 35 1 3.9330 0.3070 -1.2498 36 1 5.1705 -1.4409 -0.0005 37 1 3.7175 -2.4695 -0.0003 38 1 3.6460 -0.9824 3.3858 39 1 3.7923 -2.4921 2.4543 40 1 6.0229 -0.8629 1.8653 41 1 8.0391 -1.3321 2.9442 42 1 7.9534 -1.9861 5.6904 43 1 8.1002 -3.4956 4.7586 44 1 9.6408 -2.4022 2.4388 45 1 11.2986 -2.5069 3.0781 46 1 10.1702 -3.8647 3.3042 47 1 9.7155 -0.2254 5.5036 48 1 11.1186 -0.4800 4.4389 49 1 9.5066 -0.2038 3.7360 50 1 13.5401 -2.0372 4.8510 51 1 1.8947 -2.6773 2.1393 52 1 0.4410 -2.1641 1.2492 53 1 1.8943 -2.6775 0.3594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001470000913.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:51 Heat of formation + Delta-G solvation = -71.650850 kcal Electronic energy + Delta-G solvation = -26760.157049 eV Core-core repulsion = 23244.140682 eV Total energy + Delta-G solvation = -3516.016367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.29858 -39.24133 -36.49041 -34.93351 -33.21803 -32.79999 -32.04742 -30.65797 -28.13034 -26.37520 -25.73515 -25.69548 -25.26488 -24.18529 -22.19618 -20.86864 -20.48104 -18.75320 -18.67713 -17.92119 -16.24685 -15.85728 -15.70095 -15.36311 -15.00777 -14.66525 -14.56337 -14.21756 -14.01667 -13.64458 -13.48745 -13.08364 -12.88046 -12.83164 -12.81329 -12.46881 -12.16009 -12.10660 -11.92641 -11.75661 -11.46869 -11.38227 -11.16563 -11.08452 -10.93693 -10.82928 -10.66946 -10.44902 -10.34598 -10.28114 -10.19029 -10.14498 -9.71181 -9.58701 -9.27181 -8.87643 -8.76245 -8.37658 -8.11964 -6.00026 -4.08442 3.17952 3.30937 3.37182 3.41540 3.72294 4.31892 4.34053 4.38621 4.42759 4.77545 4.78452 4.90420 4.97870 5.04870 5.08081 5.13768 5.26783 5.27142 5.31737 5.37701 5.46546 5.55932 5.63682 5.67884 5.72561 5.74763 5.81301 5.86456 5.91956 6.00811 6.06627 6.08747 6.13001 6.26227 6.34352 6.41058 6.54713 6.74604 6.84562 6.85837 6.94834 7.06706 7.15323 7.36074 7.47195 7.59216 7.73349 8.02923 8.15214 8.41366 8.55582 8.91269 9.12227 9.56721 11.02065 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.035076 B = 0.002318 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.065031 B =12077.138845 C =12450.806666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 H 0.068 0.932 4 C -0.116 4.116 5 C -0.119 4.119 6 C -0.117 4.117 7 C -0.093 4.093 8 H 0.075 0.925 9 C 0.145 3.855 10 N -0.753 5.753 11 C 0.697 3.303 12 O -0.601 6.601 13 N -0.734 5.734 14 C 0.151 3.849 15 C 0.056 3.944 16 C -0.128 4.128 17 C -0.129 4.129 18 C -0.506 4.506 19 H 0.058 0.942 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.280 1.280 24 H -0.288 1.288 25 H -0.275 1.275 26 C -0.077 4.077 27 H 0.072 0.928 28 C -0.158 4.158 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.392 0.608 41 H 0.393 0.607 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.006 0.994 45 H 0.080 0.920 46 H 0.029 0.971 47 H 0.026 0.974 48 H 0.085 0.915 49 H 0.005 0.995 50 H 0.259 0.741 51 H 0.059 0.941 52 H 0.056 0.944 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.008 5.332 -14.021 25.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.104 4.104 3 H 0.087 0.913 4 C -0.154 4.154 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.112 4.112 8 H 0.094 0.906 9 C 0.020 3.980 10 N -0.410 5.410 11 C 0.396 3.604 12 O -0.480 6.480 13 N -0.389 5.389 14 C 0.028 3.972 15 C 0.055 3.945 16 C -0.185 4.185 17 C -0.187 4.187 18 C -0.544 4.544 19 H 0.076 0.924 20 C -0.135 4.135 21 N -0.524 5.524 22 Si 0.721 3.279 23 H -0.206 1.206 24 H -0.214 1.214 25 H -0.200 1.200 26 C -0.096 4.096 27 H 0.090 0.910 28 C -0.215 4.215 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.225 0.775 41 H 0.227 0.773 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.025 0.975 45 H 0.099 0.901 46 H 0.048 0.952 47 H 0.045 0.955 48 H 0.103 0.897 49 H 0.024 0.976 50 H 0.069 0.931 51 H 0.078 0.922 52 H 0.075 0.925 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.358 4.806 -13.227 24.749 hybrid contribution 1.037 -0.007 0.062 1.039 sum -19.321 4.799 -13.165 23.867 Atomic orbital electron populations 1.21889 0.95349 1.01981 1.01461 1.21120 0.95343 0.99292 0.94657 0.91334 1.21636 0.95583 1.00920 0.97219 1.21528 0.95593 1.00737 0.97808 1.21643 1.00406 0.99774 0.93626 1.21408 0.95569 0.99933 0.94322 0.90632 1.21201 0.79120 1.00656 0.97000 1.45153 1.07334 1.61060 1.27485 1.16085 0.82331 0.79890 0.82062 1.90874 1.68223 1.48463 1.40486 1.45508 1.04289 1.59492 1.29577 1.21549 0.92973 0.96177 0.86525 1.18364 0.87793 0.93393 0.94960 1.21793 1.02574 0.98595 0.95586 1.21833 1.03388 0.96800 0.96659 1.20973 0.91130 1.35646 1.06667 0.92419 1.24880 0.97595 0.95075 0.95954 1.69831 1.07603 1.40241 1.34763 0.86596 0.79087 0.80008 0.82228 1.20644 1.21376 1.19969 1.21049 0.93728 0.96824 0.97950 0.90992 1.22076 1.00899 0.96075 1.02422 0.92748 0.92943 0.92308 0.91630 0.92350 0.92067 0.92072 0.91862 0.91360 0.92085 0.91666 0.77466 0.77276 0.93051 0.93011 0.97501 0.90096 0.95219 0.95488 0.89669 0.97619 0.93061 0.92192 0.92540 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 8.84 37.16 0.33 -0.57 16 2 C -0.09 -0.57 2.49 -90.62 -0.23 -0.79 16 3 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.12 -0.75 4.93 -26.73 -0.13 -0.88 16 5 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 6 C -0.12 -0.93 4.80 -26.73 -0.13 -1.06 16 7 C -0.09 -0.78 2.00 -90.62 -0.18 -0.96 16 8 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 9 C 0.14 1.68 4.56 -4.04 -0.02 1.66 16 10 N -0.75 -10.02 5.29 -65.22 -0.34 -10.36 16 11 C 0.70 12.73 8.57 -86.92 -0.74 11.99 16 12 O -0.60 -13.46 16.34 5.30 0.09 -13.37 16 13 N -0.73 -13.50 4.91 -65.23 -0.32 -13.82 16 14 C 0.15 3.31 4.50 -4.04 -0.02 3.29 16 15 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 16 C -0.13 -2.90 8.03 37.16 0.30 -2.60 16 17 C -0.13 -2.94 8.11 37.15 0.30 -2.64 16 18 C -0.51 -13.40 8.01 -34.44 -0.28 -13.67 16 19 H 0.06 1.55 7.75 -52.49 -0.41 1.14 16 20 C 0.07 1.76 5.13 -17.82 -0.09 1.67 16 21 N -0.89 -23.77 9.45 55.43 0.52 -23.25 16 22 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 C -0.08 -0.57 2.25 -90.61 -0.20 -0.78 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 C -0.16 -1.20 7.80 37.16 0.29 -0.91 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.35 6.43 -51.93 -0.33 0.01 16 32 H 0.07 0.44 6.43 -51.93 -0.33 0.10 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.53 7.18 -51.93 -0.37 0.16 16 37 H 0.07 0.58 6.43 -51.93 -0.33 0.25 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.83 6.71 -51.93 -0.35 0.48 16 40 H 0.39 4.22 7.67 -40.82 -0.31 3.90 16 41 H 0.39 6.45 6.17 -40.82 -0.25 6.20 16 42 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.01 0.12 6.71 -51.93 -0.35 -0.23 16 45 H 0.08 2.01 6.25 -51.93 -0.32 1.68 16 46 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.08 2.14 6.10 -51.93 -0.32 1.82 16 49 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 50 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 51 H 0.06 0.52 6.54 -51.93 -0.34 0.18 16 52 H 0.06 0.39 6.43 -51.93 -0.33 0.05 16 53 H 0.06 0.46 4.81 -51.93 -0.25 0.21 16 LS Contribution 385.92 15.07 5.82 5.82 Total: -1.00 -29.22 385.92 -9.89 -39.12 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -9.59 Total: 5.99 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -1.04 Total: -6.02 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.14 Total: -47.43 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.09 Total: -13.37 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.22 -9.89 -39.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470000913.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.533 kcal (2) G-P(sol) polarization free energy of solvation -29.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds