Wall clock time and date at job start Tue Mar 31 2020 11:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47514 * 2 1 4 4 C 1.53000 * 109.46867 * 240.00229 * 2 1 3 5 5 C 1.52998 * 109.47202 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47143 * 60.00121 * 5 4 2 7 7 C 1.53000 * 109.46973 * 300.00019 * 6 5 4 8 8 H 1.08991 * 109.47561 * 299.99640 * 7 6 5 9 9 C 1.53003 * 109.47086 * 179.97438 * 7 6 5 10 10 N 1.46501 * 109.47091 * 65.00069 * 9 7 6 11 11 C 1.34777 * 120.00131 * 179.97438 * 10 9 7 12 12 O 1.21580 * 119.99914 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99736 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99897 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47378 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.46961 * 300.00149 * 15 14 13 17 17 C 1.52994 * 109.47187 * 59.99866 * 15 14 13 18 18 C 1.50703 * 109.47255 * 180.02562 * 15 14 13 19 19 H 1.07997 * 119.99962 * 357.00436 * 18 15 14 20 20 C 1.37874 * 120.00023 * 177.00574 * 18 15 14 21 21 N 1.31519 * 119.99945 * 5.53921 * 20 18 15 22 22 Si 1.86803 * 119.99906 * 185.54128 * 20 18 15 23 23 H 1.48501 * 109.46905 * 85.00250 * 22 20 18 24 24 H 1.48501 * 109.46752 * 204.99960 * 22 20 18 25 25 H 1.48491 * 109.46953 * 324.99642 * 22 20 18 26 26 C 1.52998 * 109.47202 * 60.00017 * 7 6 5 27 27 H 1.08998 * 109.47271 * 179.97438 * 26 7 6 28 28 C 1.53009 * 109.47197 * 59.99740 * 26 7 6 29 29 H 1.08998 * 109.46935 * 299.99475 * 1 2 3 30 30 H 1.08996 * 109.47292 * 59.99689 * 1 2 3 31 31 H 1.09004 * 109.47164 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47728 * 299.99888 * 4 2 1 33 33 H 1.08996 * 109.47098 * 59.99963 * 4 2 1 34 34 H 1.09004 * 109.47380 * 179.97438 * 5 4 2 35 35 H 1.08998 * 109.47554 * 300.00499 * 5 4 2 36 36 H 1.09005 * 109.47335 * 180.02562 * 6 5 4 37 37 H 1.09004 * 109.47253 * 59.99899 * 6 5 4 38 38 H 1.09001 * 109.47243 * 185.00266 * 9 7 6 39 39 H 1.09003 * 109.47423 * 305.00303 * 9 7 6 40 40 H 0.97002 * 119.99805 * 0.02562 * 10 9 7 41 41 H 0.97002 * 120.00200 * 0.02562 * 13 11 10 42 42 H 1.09003 * 109.47511 * 300.00116 * 14 13 11 43 43 H 1.08998 * 109.46937 * 60.00002 * 14 13 11 44 44 H 1.08997 * 109.46815 * 53.93108 * 16 15 14 45 45 H 1.08994 * 109.47094 * 173.93614 * 16 15 14 46 46 H 1.09002 * 109.46950 * 293.93013 * 16 15 14 47 47 H 1.09000 * 109.47205 * 59.99952 * 17 15 14 48 48 H 1.08995 * 109.47477 * 179.97438 * 17 15 14 49 49 H 1.09004 * 109.47560 * 300.00219 * 17 15 14 50 50 H 0.96995 * 119.99705 * 179.97438 * 21 20 18 51 51 H 1.08996 * 109.46985 * 60.00196 * 28 26 7 52 52 H 1.08996 * 109.47085 * 180.02562 * 28 26 7 53 53 H 1.08998 * 109.46982 * 300.00142 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5699 -0.7207 -1.2497 6 6 4.0805 -1.4417 -0.0005 7 6 3.5706 -0.7205 1.2488 8 1 3.9335 0.3072 1.2487 9 6 4.0806 -1.4418 2.4980 10 7 5.5407 -1.3384 2.5597 11 6 6.2137 -1.9032 3.5817 12 8 5.6091 -2.4989 4.4523 13 7 7.5568 -1.8076 3.6386 14 6 8.2885 -2.4220 4.7492 15 6 9.7872 -2.1680 4.5752 16 6 10.2581 -2.7794 3.2540 17 6 10.0509 -0.6610 4.5624 18 6 10.5398 -2.8005 5.7174 19 1 10.0000 -3.2888 6.5152 20 6 11.9176 -2.7558 5.7438 21 7 12.5709 -2.0689 4.8322 22 14 12.8564 -3.6710 7.0745 23 1 13.0521 -5.0834 6.6598 24 1 14.1789 -3.0273 7.2789 25 1 12.0845 -3.6296 8.3423 26 6 2.0406 -0.7210 1.2492 27 1 1.6773 -0.2076 2.1394 28 6 1.5310 -2.1637 1.2494 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6766 -1.7489 -1.2494 33 1 1.6766 -0.2074 -2.1392 34 1 3.9332 -1.2349 -2.1395 35 1 3.9330 0.3070 -1.2498 36 1 5.1705 -1.4409 -0.0005 37 1 3.7175 -2.4695 -0.0003 38 1 3.6460 -0.9824 3.3858 39 1 3.7923 -2.4921 2.4543 40 1 6.0229 -0.8629 1.8653 41 1 8.0391 -1.3321 2.9442 42 1 7.9534 -1.9861 5.6904 43 1 8.1002 -3.4956 4.7586 44 1 9.6408 -2.4022 2.4388 45 1 11.2986 -2.5069 3.0781 46 1 10.1702 -3.8647 3.3042 47 1 9.7155 -0.2254 5.5036 48 1 11.1186 -0.4800 4.4389 49 1 9.5066 -0.2038 3.7360 50 1 13.5401 -2.0372 4.8510 51 1 1.8947 -2.6773 2.1393 52 1 0.4410 -2.1641 1.2492 53 1 1.8943 -2.6775 0.3594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001470000913.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:50 Heat of formation + Delta-G solvation = -87.447928 kcal Electronic energy + Delta-G solvation = -26760.842061 eV Core-core repulsion = 23244.140682 eV Total energy + Delta-G solvation = -3516.701380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.27162 -40.41007 -38.22781 -36.05323 -34.96975 -33.45535 -33.10261 -32.28697 -28.89028 -27.55228 -27.48604 -27.10430 -26.57482 -25.50740 -22.79018 -22.07107 -21.44790 -20.56219 -19.66156 -19.00639 -17.75834 -17.33340 -16.71483 -16.60676 -16.40081 -16.01079 -15.36548 -15.32598 -15.10302 -14.85575 -14.69870 -14.45878 -14.33810 -13.98288 -13.60799 -13.48892 -13.33624 -13.20657 -13.06050 -12.72439 -12.66870 -12.59605 -12.56795 -12.35955 -12.22873 -12.13710 -12.05921 -11.76796 -11.50121 -11.46630 -11.36893 -11.15543 -11.03633 -10.85300 -10.74217 -10.69818 -10.39159 -10.24876 -9.61291 -8.02062 -6.16129 1.43524 1.45847 1.53524 1.85450 2.23641 2.47221 3.21839 3.44516 3.64997 3.74574 3.82469 4.16560 4.24884 4.33457 4.43457 4.45852 4.47551 4.52955 4.54723 4.59910 4.72792 4.74584 4.79754 4.82316 4.90411 4.96841 5.02271 5.07136 5.07272 5.10104 5.12304 5.14945 5.21212 5.22758 5.28201 5.30834 5.39471 5.40675 5.47401 5.48474 5.55829 5.61647 5.65904 5.68438 5.69553 5.75208 6.11076 6.15323 6.22964 6.44603 6.87697 7.19770 7.50948 7.67181 8.97547 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.035076 B = 0.002318 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.065031 B =12077.138845 C =12450.806666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.082 4.082 3 H 0.070 0.930 4 C -0.115 4.115 5 C -0.116 4.116 6 C -0.116 4.116 7 C -0.082 4.082 8 H 0.084 0.916 9 C 0.145 3.855 10 N -0.732 5.732 11 C 0.694 3.306 12 O -0.644 6.644 13 N -0.726 5.726 14 C 0.168 3.832 15 C 0.052 3.948 16 C -0.117 4.117 17 C -0.119 4.119 18 C -0.529 4.529 19 H 0.044 0.956 20 C 0.029 3.971 21 N -0.898 5.898 22 Si 0.945 3.055 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.277 1.277 26 C -0.075 4.075 27 H 0.069 0.931 28 C -0.156 4.156 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.408 0.592 41 H 0.405 0.595 42 H 0.033 0.967 43 H 0.034 0.966 44 H 0.038 0.962 45 H 0.060 0.940 46 H 0.017 0.983 47 H 0.016 0.984 48 H 0.062 0.938 49 H 0.036 0.964 50 H 0.260 0.740 51 H 0.044 0.956 52 H 0.064 0.936 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.780 6.222 -15.692 26.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.100 4.100 3 H 0.089 0.911 4 C -0.152 4.152 5 C -0.153 4.153 6 C -0.154 4.154 7 C -0.101 4.101 8 H 0.102 0.898 9 C 0.021 3.979 10 N -0.389 5.389 11 C 0.394 3.606 12 O -0.527 6.527 13 N -0.382 5.382 14 C 0.044 3.956 15 C 0.051 3.949 16 C -0.175 4.175 17 C -0.177 4.177 18 C -0.568 4.568 19 H 0.062 0.938 20 C -0.171 4.171 21 N -0.537 5.537 22 Si 0.771 3.229 23 H -0.204 1.204 24 H -0.208 1.208 25 H -0.202 1.202 26 C -0.094 4.094 27 H 0.087 0.913 28 C -0.213 4.213 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.245 0.755 41 H 0.242 0.758 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.079 0.921 46 H 0.036 0.964 47 H 0.036 0.964 48 H 0.081 0.919 49 H 0.055 0.945 50 H 0.070 0.930 51 H 0.063 0.937 52 H 0.083 0.917 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.135 5.731 -14.956 26.518 hybrid contribution 1.222 -0.280 0.567 1.376 sum -19.913 5.451 -14.389 25.165 Atomic orbital electron populations 1.21877 0.94816 1.02097 1.01790 1.21087 0.95763 0.99151 0.94017 0.91145 1.21630 0.95269 1.00903 0.97413 1.21504 0.95843 1.00807 0.97184 1.21632 1.00280 0.99535 0.93919 1.21336 0.96140 0.99825 0.92763 0.89777 1.21317 0.77790 1.00463 0.98327 1.44997 1.07991 1.59610 1.26254 1.16235 0.82081 0.79761 0.82505 1.90850 1.68979 1.50409 1.42452 1.45199 1.04454 1.59510 1.29026 1.21091 0.92375 0.95181 0.86995 1.18362 0.88307 0.93754 0.94487 1.21634 1.01853 0.97830 0.96178 1.21671 1.02240 0.96333 0.97417 1.21250 0.91828 1.36214 1.07481 0.93800 1.25450 0.98247 0.95731 0.97716 1.69927 1.07688 1.40544 1.35529 0.85784 0.78012 0.79009 0.80060 1.20425 1.20840 1.20174 1.21044 0.92959 0.96839 0.98567 0.91270 1.22056 1.01435 0.96051 1.01753 0.92795 0.92279 0.92306 0.91819 0.91546 0.91674 0.91625 0.92026 0.92021 0.93232 0.92761 0.75525 0.75818 0.94844 0.94746 0.94317 0.92114 0.96390 0.96442 0.91877 0.94475 0.93041 0.93699 0.91729 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.84 71.98 0.64 -0.85 16 2 C -0.08 -0.90 2.49 -10.79 -0.03 -0.93 16 3 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 4 C -0.11 -1.21 4.93 30.59 0.15 -1.06 16 5 C -0.12 -1.32 5.92 30.59 0.18 -1.13 16 6 C -0.12 -1.62 4.80 30.60 0.15 -1.48 16 7 C -0.08 -1.23 2.00 -10.79 -0.02 -1.25 16 8 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 9 C 0.15 3.24 4.56 86.38 0.39 3.64 16 10 N -0.73 -18.36 5.29 -478.53 -2.53 -20.89 16 11 C 0.69 24.85 8.57 179.05 1.53 26.38 16 12 O -0.64 -29.05 16.34 -3.97 -0.06 -29.12 16 13 N -0.73 -25.84 4.91 -478.54 -2.35 -28.19 16 14 C 0.17 7.39 4.50 86.38 0.39 7.78 16 15 C 0.05 2.42 0.50 -52.93 -0.03 2.39 16 16 C -0.12 -5.23 8.03 71.98 0.58 -4.65 16 17 C -0.12 -5.32 8.11 71.98 0.58 -4.73 16 18 C -0.53 -28.34 8.01 25.60 0.20 -28.14 16 19 H 0.04 2.41 7.75 -2.91 -0.02 2.39 16 20 C 0.03 1.51 5.13 84.65 0.43 1.95 16 21 N -0.90 -48.10 9.45 21.45 0.20 -47.90 16 22 Si 0.94 42.99 29.54 68.60 2.03 45.01 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 26 C -0.08 -1.01 2.25 -10.79 -0.02 -1.04 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 C -0.16 -2.22 7.80 71.99 0.56 -1.66 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.59 6.43 -2.39 -0.02 0.57 16 32 H 0.06 0.71 6.43 -2.39 -0.02 0.70 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.06 0.88 7.18 -2.38 -0.02 0.87 16 37 H 0.06 0.96 6.43 -2.39 -0.02 0.94 16 38 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.05 1.37 6.71 -2.39 -0.02 1.35 16 40 H 0.41 7.74 7.67 -92.71 -0.71 7.02 16 41 H 0.41 12.30 6.17 -92.71 -0.57 11.73 16 42 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.04 1.43 6.71 -2.39 -0.02 1.41 16 45 H 0.06 2.97 6.25 -2.39 -0.01 2.96 16 46 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.02 0.76 8.14 -2.39 -0.02 0.75 16 48 H 0.06 3.13 6.10 -2.39 -0.01 3.11 16 49 H 0.04 1.38 6.86 -2.38 -0.02 1.36 16 50 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 51 H 0.04 0.77 6.54 -2.39 -0.02 0.76 16 52 H 0.06 0.81 6.43 -2.39 -0.02 0.79 16 53 H 0.06 0.88 4.81 -2.39 -0.01 0.87 16 Total: -1.00 -62.73 385.92 2.59 -60.15 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: -0.39 Total: 25.73 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 5.69 Total: -4.78 kcal Atomic # 7 Polarization: -92.31 SS G_CDS: -4.68 Total: -96.99 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.06 Total: -29.12 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -62.73 2.59 -60.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470000913.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.301 kcal (2) G-P(sol) polarization free energy of solvation -62.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds