Wall clock time and date at job start Tue Mar 31 2020 10:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47213 * 2 1 4 4 H 1.08999 * 109.47329 * 52.51305 * 3 2 1 5 5 C 1.53003 * 109.47440 * 292.51140 * 3 2 1 6 6 C 1.50701 * 109.46689 * 78.88880 * 5 3 2 7 7 O 1.21279 * 120.00134 * 9.21437 * 6 5 3 8 8 N 1.34775 * 119.99538 * 189.21290 * 6 5 3 9 9 C 1.46501 * 119.99754 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47230 * 179.97438 * 9 8 6 11 11 H 1.09007 * 112.85033 * 43.80929 * 10 9 8 12 12 C 1.53783 * 113.61785 * 175.00311 * 10 9 8 13 13 C 1.53783 * 87.17519 * 140.02648 * 12 10 9 14 14 H 1.08999 * 113.61429 * 220.06347 * 13 12 10 15 15 N 1.46492 * 113.61333 * 89.15986 * 13 12 10 16 16 C 1.36936 * 120.00175 * 155.00026 * 15 13 12 17 17 H 1.08002 * 119.99590 * 0.02562 * 16 15 13 18 18 C 1.38811 * 120.00604 * 179.97438 * 16 15 13 19 19 N 1.31618 * 119.99586 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00412 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46932 * 60.00048 * 20 18 16 22 22 H 1.48496 * 109.47540 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47043 * 300.00434 * 20 18 16 24 24 C 1.53781 * 113.69496 * 272.53998 * 10 9 8 25 25 C 1.53007 * 109.46919 * 172.51370 * 3 2 1 26 26 C 1.53007 * 109.46840 * 185.67966 * 25 3 2 27 27 C 1.52998 * 109.47130 * 305.67750 * 25 3 2 28 28 C 1.53002 * 109.47102 * 65.68041 * 25 3 2 29 29 H 1.08997 * 109.47168 * 67.36316 * 1 2 3 30 30 H 1.09000 * 109.47221 * 187.37018 * 1 2 3 31 31 H 1.09003 * 109.46778 * 307.36571 * 1 2 3 32 32 H 1.09001 * 109.47125 * 239.99941 * 2 1 3 33 33 H 1.09004 * 109.47282 * 120.00310 * 2 1 3 34 34 H 1.09000 * 109.46560 * 318.89410 * 5 3 2 35 35 H 1.08994 * 109.47453 * 198.89462 * 5 3 2 36 36 H 0.97000 * 120.00501 * 359.97438 * 8 6 5 37 37 H 1.09003 * 109.46821 * 60.00532 * 9 8 6 38 38 H 1.08992 * 109.47426 * 300.00567 * 9 8 6 39 39 H 1.08997 * 113.61694 * 254.62022 * 12 10 9 40 40 H 1.09003 * 113.60894 * 25.43521 * 12 10 9 41 41 H 0.97000 * 120.00193 * 334.99918 * 15 13 12 42 42 H 0.97001 * 120.00190 * 180.02562 * 19 18 16 43 43 H 1.08999 * 113.61579 * 334.55675 * 24 10 9 44 44 H 1.08998 * 113.61288 * 105.37061 * 24 10 9 45 45 H 1.08999 * 109.47392 * 60.00003 * 26 25 3 46 46 H 1.08999 * 109.46856 * 179.97438 * 26 25 3 47 47 H 1.09000 * 109.46870 * 299.99806 * 26 25 3 48 48 H 1.09004 * 109.46952 * 66.47927 * 27 25 3 49 49 H 1.09005 * 109.47349 * 186.47555 * 27 25 3 50 50 H 1.09004 * 109.47199 * 306.47458 * 27 25 3 51 51 H 1.09002 * 109.46816 * 60.00012 * 28 25 3 52 52 H 1.08999 * 109.47013 * 179.97438 * 28 25 3 53 53 H 1.08995 * 109.46976 * 299.99832 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5715 1.9935 0.8154 5 6 1.6893 2.1075 -1.3326 6 6 0.2409 2.5234 -1.3205 7 8 -0.3987 2.4636 -0.2918 8 7 -0.3437 2.9618 -2.4530 9 6 -1.7519 3.3656 -2.4415 10 6 -2.1640 3.8190 -3.8434 11 1 -1.7959 3.1573 -4.6276 12 6 -3.6605 4.1500 -3.9689 13 6 -3.2456 5.3403 -4.8496 14 1 -3.8236 6.2451 -4.6616 15 7 -3.1491 5.0110 -6.2738 16 6 -3.3004 5.9935 -7.2155 17 1 -3.4905 7.0113 -6.9083 18 6 -3.2085 5.6817 -8.5650 19 7 -2.9753 4.4416 -8.9394 20 14 -3.4157 7.0218 -9.8497 21 1 -2.3760 8.0634 -9.6505 22 1 -3.2732 6.4339 -11.2059 23 1 -4.7618 7.6339 -9.7138 24 6 -1.8924 5.3079 -4.1161 25 6 3.5584 1.4465 0.1880 26 6 4.0509 2.8881 0.3298 27 6 3.9183 0.6582 1.4489 28 6 4.2244 0.7972 -1.0269 29 1 -0.3633 0.3955 -0.9485 30 1 -0.3633 -1.0192 0.1318 31 1 -0.3633 0.6237 0.8168 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.8580 1.4019 -2.1461 35 1 2.3184 2.9857 -1.4770 36 1 0.1679 3.0100 -3.2757 37 1 -1.8883 4.1881 -1.7393 38 1 -2.3696 2.5211 -2.1361 39 1 -4.2324 3.3907 -4.5021 40 1 -4.1230 4.4442 -3.0267 41 1 -2.9779 4.0970 -6.5497 42 1 -2.9106 4.2236 -9.8824 43 1 -1.8712 5.9202 -3.2145 44 1 -1.0359 5.4834 -4.7670 45 1 3.5765 3.3507 1.1953 46 1 5.1326 2.8910 0.4642 47 1 3.7945 3.4497 -0.5685 48 1 3.6716 -0.3934 1.3027 49 1 4.9857 0.7568 1.6468 50 1 3.3542 1.0496 2.2955 51 1 3.9680 1.3589 -1.9252 52 1 5.3062 0.8005 -0.8932 53 1 3.8736 -0.2298 -1.1279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691534194.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:02:04 Heat of formation + Delta-G solvation = -37.656423 kcal Electronic energy + Delta-G solvation = -26448.307939 eV Core-core repulsion = 22933.765681 eV Total energy + Delta-G solvation = -3514.542258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.41503 -38.88998 -38.03719 -34.65402 -33.26654 -33.17775 -30.69850 -29.91805 -27.59369 -27.56408 -27.19944 -25.07724 -24.88141 -23.61135 -21.83457 -21.52023 -20.36099 -18.46979 -18.39743 -17.42916 -16.93664 -16.28307 -15.93562 -15.09128 -15.06697 -14.62559 -14.38612 -14.31792 -14.05259 -13.88349 -13.60610 -13.21575 -12.95179 -12.86455 -12.74053 -12.54851 -12.30262 -12.12197 -11.93920 -11.91592 -11.85974 -11.76396 -11.45460 -11.23275 -11.05284 -10.96956 -10.84164 -10.54030 -10.52929 -10.45843 -10.28194 -10.21988 -10.00758 -9.70637 -9.67271 -9.40533 -8.92301 -8.86290 -7.02011 -5.82567 -3.11624 2.71961 3.27810 3.41033 3.45578 3.46460 4.38677 4.47011 4.50194 4.54127 4.81856 4.87523 5.00705 5.06317 5.09826 5.15750 5.23990 5.29556 5.33638 5.37110 5.37840 5.42492 5.43814 5.53885 5.56458 5.63519 5.65426 5.67402 5.71590 5.74958 5.83465 5.87076 5.91820 5.96739 6.02871 6.03553 6.08205 6.11238 6.20321 6.21197 6.29825 6.36636 6.38201 6.54106 6.62045 6.73523 6.90262 7.03419 7.59325 7.66721 8.31414 8.36710 9.47226 10.04877 10.39101 11.39825 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.021936 B = 0.002298 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.159318 B =12180.392549 C =12693.738304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C -0.065 4.065 4 H 0.087 0.913 5 C -0.141 4.141 6 C 0.509 3.491 7 O -0.540 6.540 8 N -0.728 5.728 9 C 0.132 3.868 10 C -0.119 4.119 11 H 0.092 0.908 12 C -0.148 4.148 13 C 0.167 3.833 14 H 0.062 0.938 15 N -0.705 5.705 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.909 3.091 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.285 1.285 24 C -0.168 4.168 25 C -0.066 4.066 26 C -0.145 4.145 27 C -0.142 4.142 28 C -0.146 4.146 29 H 0.050 0.950 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.401 0.599 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.058 0.942 49 H 0.052 0.948 50 H 0.055 0.945 51 H 0.057 0.943 52 H 0.052 0.948 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.494 -8.089 19.278 24.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C -0.083 4.083 4 H 0.105 0.895 5 C -0.181 4.181 6 C 0.296 3.704 7 O -0.418 6.418 8 N -0.379 5.379 9 C 0.009 3.991 10 C -0.138 4.138 11 H 0.110 0.890 12 C -0.188 4.188 13 C 0.055 3.945 14 H 0.080 0.920 15 N -0.344 5.344 16 C -0.374 4.374 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.209 4.209 25 C -0.066 4.066 26 C -0.202 4.202 27 C -0.199 4.199 28 C -0.203 4.203 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.235 0.765 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.071 0.929 50 H 0.074 0.926 51 H 0.076 0.924 52 H 0.071 0.929 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.975 -7.975 19.866 25.032 hybrid contribution 0.275 0.386 -1.366 1.446 sum 13.250 -7.589 18.500 23.987 Atomic orbital electron populations 1.21980 0.95188 1.00164 1.03008 1.21699 0.96477 0.95835 1.01660 1.21079 0.93866 0.96538 0.96848 0.89519 1.21899 0.93458 1.02434 1.00328 1.20621 0.89526 0.76863 0.83433 1.90680 1.65656 1.53794 1.31679 1.46138 1.13122 1.66636 1.12017 1.21426 0.80734 0.99368 0.97591 1.22696 0.98165 0.98008 0.94933 0.88998 1.23441 0.94432 1.00573 1.00337 1.21085 0.93319 0.95188 0.84905 0.91988 1.42157 1.84603 1.09152 0.98485 1.19248 1.41381 0.90104 0.86659 0.91051 1.24764 1.02561 0.96461 0.97098 1.69649 1.55898 1.16946 1.15621 0.86240 0.77972 0.80878 0.80929 1.21221 1.21676 1.21183 1.23907 1.02473 0.94152 1.00353 1.20587 0.94683 0.95611 0.95730 1.21950 1.00763 0.95575 1.01920 1.21921 1.00948 1.00080 0.96947 1.21979 1.00089 1.00776 0.97474 0.93108 0.94345 0.91209 0.92407 0.91726 0.89241 0.88650 0.76517 0.91791 0.92049 0.91390 0.90526 0.78121 0.93382 0.91492 0.91581 0.92582 0.92736 0.92431 0.92303 0.92901 0.92623 0.92379 0.92922 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.22 37.16 0.31 -1.32 16 2 C -0.12 -1.07 4.66 -26.74 -0.12 -1.19 16 3 C -0.06 -0.57 1.24 -90.62 -0.11 -0.68 16 4 H 0.09 0.95 7.21 -51.93 -0.37 0.57 16 5 C -0.14 -1.26 3.93 -27.88 -0.11 -1.37 16 6 C 0.51 6.12 5.94 -10.99 -0.07 6.06 16 7 O -0.54 -8.08 12.29 5.56 0.07 -8.02 16 8 N -0.73 -8.57 5.56 -60.30 -0.33 -8.91 16 9 C 0.13 1.75 5.51 -4.04 -0.02 1.73 16 10 C -0.12 -1.76 3.63 -89.81 -0.33 -2.09 16 11 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 12 C -0.15 -2.37 7.38 -25.92 -0.19 -2.56 16 13 C 0.17 3.24 4.57 -67.03 -0.31 2.93 16 14 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 15 N -0.71 -17.26 5.31 -52.55 -0.28 -17.53 16 16 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 20 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 C -0.17 -2.76 7.44 -25.83 -0.19 -2.96 16 25 C -0.07 -0.48 0.58 -154.50 -0.09 -0.57 16 26 C -0.14 -1.04 8.28 37.16 0.31 -0.73 16 27 C -0.14 -0.96 7.75 37.16 0.29 -0.67 16 28 C -0.15 -0.97 7.81 37.16 0.29 -0.68 16 29 H 0.05 0.63 5.78 -51.93 -0.30 0.33 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.89 6.87 -51.93 -0.36 0.54 16 32 H 0.06 0.48 6.80 -51.93 -0.35 0.13 16 33 H 0.06 0.53 6.06 -51.93 -0.31 0.22 16 34 H 0.09 0.70 7.26 -51.93 -0.38 0.32 16 35 H 0.10 0.75 5.99 -51.93 -0.31 0.44 16 36 H 0.40 4.13 8.47 -40.82 -0.35 3.78 16 37 H 0.06 0.89 7.85 -51.93 -0.41 0.48 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 41 H 0.38 9.95 7.90 -40.82 -0.32 9.62 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.07 1.00 7.90 -51.93 -0.41 0.59 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.41 6.28 -51.93 -0.33 0.08 16 48 H 0.06 0.39 6.57 -51.93 -0.34 0.04 16 49 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 50 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.06 0.38 6.78 -51.93 -0.35 0.03 16 52 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 53 H 0.06 0.38 6.76 -51.93 -0.35 0.03 16 LS Contribution 397.76 15.07 5.99 5.99 Total: -1.00 -30.13 397.76 -9.30 -39.44 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -9.86 Total: 10.27 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -0.59 Total: -11.34 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: 0.11 Total: -53.39 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.07 Total: -8.02 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.13 -9.30 -39.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691534194.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.780 kcal (2) G-P(sol) polarization free energy of solvation -30.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds