Wall clock time and date at job start Tue Mar 31 2020 10:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47213 * 2 1 4 4 H 1.08999 * 109.47329 * 52.51305 * 3 2 1 5 5 C 1.53003 * 109.47440 * 292.51140 * 3 2 1 6 6 C 1.50701 * 109.46689 * 78.88880 * 5 3 2 7 7 O 1.21279 * 120.00134 * 9.21437 * 6 5 3 8 8 N 1.34775 * 119.99538 * 189.21290 * 6 5 3 9 9 C 1.46501 * 119.99754 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47230 * 179.97438 * 9 8 6 11 11 H 1.09007 * 112.85033 * 43.80929 * 10 9 8 12 12 C 1.53783 * 113.61785 * 175.00311 * 10 9 8 13 13 C 1.53783 * 87.17519 * 140.02648 * 12 10 9 14 14 H 1.08999 * 113.61429 * 220.06347 * 13 12 10 15 15 N 1.46492 * 113.61333 * 89.15986 * 13 12 10 16 16 C 1.36936 * 120.00175 * 155.00026 * 15 13 12 17 17 H 1.08002 * 119.99590 * 0.02562 * 16 15 13 18 18 C 1.38811 * 120.00604 * 179.97438 * 16 15 13 19 19 N 1.31618 * 119.99586 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00412 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46932 * 60.00048 * 20 18 16 22 22 H 1.48496 * 109.47540 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47043 * 300.00434 * 20 18 16 24 24 C 1.53781 * 113.69496 * 272.53998 * 10 9 8 25 25 C 1.53007 * 109.46919 * 172.51370 * 3 2 1 26 26 C 1.53007 * 109.46840 * 185.67966 * 25 3 2 27 27 C 1.52998 * 109.47130 * 305.67750 * 25 3 2 28 28 C 1.53002 * 109.47102 * 65.68041 * 25 3 2 29 29 H 1.08997 * 109.47168 * 67.36316 * 1 2 3 30 30 H 1.09000 * 109.47221 * 187.37018 * 1 2 3 31 31 H 1.09003 * 109.46778 * 307.36571 * 1 2 3 32 32 H 1.09001 * 109.47125 * 239.99941 * 2 1 3 33 33 H 1.09004 * 109.47282 * 120.00310 * 2 1 3 34 34 H 1.09000 * 109.46560 * 318.89410 * 5 3 2 35 35 H 1.08994 * 109.47453 * 198.89462 * 5 3 2 36 36 H 0.97000 * 120.00501 * 359.97438 * 8 6 5 37 37 H 1.09003 * 109.46821 * 60.00532 * 9 8 6 38 38 H 1.08992 * 109.47426 * 300.00567 * 9 8 6 39 39 H 1.08997 * 113.61694 * 254.62022 * 12 10 9 40 40 H 1.09003 * 113.60894 * 25.43521 * 12 10 9 41 41 H 0.97000 * 120.00193 * 334.99918 * 15 13 12 42 42 H 0.97001 * 120.00190 * 180.02562 * 19 18 16 43 43 H 1.08999 * 113.61579 * 334.55675 * 24 10 9 44 44 H 1.08998 * 113.61288 * 105.37061 * 24 10 9 45 45 H 1.08999 * 109.47392 * 60.00003 * 26 25 3 46 46 H 1.08999 * 109.46856 * 179.97438 * 26 25 3 47 47 H 1.09000 * 109.46870 * 299.99806 * 26 25 3 48 48 H 1.09004 * 109.46952 * 66.47927 * 27 25 3 49 49 H 1.09005 * 109.47349 * 186.47555 * 27 25 3 50 50 H 1.09004 * 109.47199 * 306.47458 * 27 25 3 51 51 H 1.09002 * 109.46816 * 60.00012 * 28 25 3 52 52 H 1.08999 * 109.47013 * 179.97438 * 28 25 3 53 53 H 1.08995 * 109.46976 * 299.99832 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5715 1.9935 0.8154 5 6 1.6893 2.1075 -1.3326 6 6 0.2409 2.5234 -1.3205 7 8 -0.3987 2.4636 -0.2918 8 7 -0.3437 2.9618 -2.4530 9 6 -1.7519 3.3656 -2.4415 10 6 -2.1640 3.8190 -3.8434 11 1 -1.7959 3.1573 -4.6276 12 6 -3.6605 4.1500 -3.9689 13 6 -3.2456 5.3403 -4.8496 14 1 -3.8236 6.2451 -4.6616 15 7 -3.1491 5.0110 -6.2738 16 6 -3.3004 5.9935 -7.2155 17 1 -3.4905 7.0113 -6.9083 18 6 -3.2085 5.6817 -8.5650 19 7 -2.9753 4.4416 -8.9394 20 14 -3.4157 7.0218 -9.8497 21 1 -2.3760 8.0634 -9.6505 22 1 -3.2732 6.4339 -11.2059 23 1 -4.7618 7.6339 -9.7138 24 6 -1.8924 5.3079 -4.1161 25 6 3.5584 1.4465 0.1880 26 6 4.0509 2.8881 0.3298 27 6 3.9183 0.6582 1.4489 28 6 4.2244 0.7972 -1.0269 29 1 -0.3633 0.3955 -0.9485 30 1 -0.3633 -1.0192 0.1318 31 1 -0.3633 0.6237 0.8168 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.8580 1.4019 -2.1461 35 1 2.3184 2.9857 -1.4770 36 1 0.1679 3.0100 -3.2757 37 1 -1.8883 4.1881 -1.7393 38 1 -2.3696 2.5211 -2.1361 39 1 -4.2324 3.3907 -4.5021 40 1 -4.1230 4.4442 -3.0267 41 1 -2.9779 4.0970 -6.5497 42 1 -2.9106 4.2236 -9.8824 43 1 -1.8712 5.9202 -3.2145 44 1 -1.0359 5.4834 -4.7670 45 1 3.5765 3.3507 1.1953 46 1 5.1326 2.8910 0.4642 47 1 3.7945 3.4497 -0.5685 48 1 3.6716 -0.3934 1.3027 49 1 4.9857 0.7568 1.6468 50 1 3.3542 1.0496 2.2955 51 1 3.9680 1.3589 -1.9252 52 1 5.3062 0.8005 -0.8932 53 1 3.8736 -0.2298 -1.1279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691534194.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:02:03 Heat of formation + Delta-G solvation = -54.789049 kcal Electronic energy + Delta-G solvation = -26449.050866 eV Core-core repulsion = 22933.765681 eV Total energy + Delta-G solvation = -3515.285185 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.31115 -40.13067 -38.95216 -35.97093 -34.92240 -33.97283 -32.18397 -31.14393 -28.60229 -28.12602 -27.97134 -26.43631 -26.01518 -25.29645 -23.08624 -22.38505 -21.30820 -19.81005 -19.33095 -19.11389 -17.96990 -17.18494 -16.96075 -16.67225 -16.02444 -15.93490 -15.51874 -15.30064 -15.02259 -14.90882 -14.66270 -14.63887 -14.11388 -13.97749 -13.57036 -13.51409 -13.27303 -13.16769 -12.92744 -12.91495 -12.76839 -12.63958 -12.54053 -12.52140 -12.40364 -12.20240 -12.07103 -11.94828 -11.63741 -11.51834 -11.47210 -11.22507 -11.15279 -10.99949 -10.93810 -10.83548 -10.52258 -9.92856 -9.00077 -7.95369 -5.23702 1.48067 1.50495 1.56628 1.77698 2.33185 2.55869 3.36998 3.67726 3.72872 3.79502 3.81476 3.85787 3.89947 4.13357 4.18127 4.22279 4.32647 4.36601 4.41842 4.48217 4.54137 4.63441 4.70538 4.75056 4.77720 4.80949 4.84521 4.91763 4.92316 4.99129 4.99441 5.05628 5.11526 5.11823 5.14673 5.19027 5.26499 5.27588 5.30828 5.36227 5.37941 5.47300 5.49118 5.53440 5.61146 5.62595 5.66194 5.71165 6.28193 6.66009 7.33192 7.37404 8.10283 8.32806 9.27697 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.021936 B = 0.002298 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.159318 B =12180.392549 C =12693.738304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.060 4.060 4 H 0.063 0.937 5 C -0.136 4.136 6 C 0.506 3.494 7 O -0.572 6.572 8 N -0.725 5.725 9 C 0.143 3.857 10 C -0.101 4.101 11 H 0.080 0.920 12 C -0.136 4.136 13 C 0.144 3.856 14 H 0.059 0.941 15 N -0.719 5.719 16 C -0.244 4.244 17 H 0.076 0.924 18 C -0.075 4.075 19 N -0.969 5.969 20 Si 0.973 3.027 21 H -0.278 1.278 22 H -0.296 1.296 23 H -0.279 1.279 24 C -0.152 4.152 25 C -0.062 4.062 26 C -0.145 4.145 27 C -0.142 4.142 28 C -0.146 4.146 29 H 0.035 0.965 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.409 0.591 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.103 0.897 41 H 0.374 0.626 42 H 0.251 0.749 43 H 0.089 0.911 44 H 0.048 0.952 45 H 0.047 0.953 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.061 0.939 49 H 0.060 0.940 50 H 0.048 0.952 51 H 0.060 0.940 52 H 0.058 0.942 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.746 -7.894 20.018 26.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.079 4.079 4 H 0.081 0.919 5 C -0.176 4.176 6 C 0.295 3.705 7 O -0.451 6.451 8 N -0.377 5.377 9 C 0.019 3.981 10 C -0.120 4.120 11 H 0.099 0.901 12 C -0.175 4.175 13 C 0.034 3.966 14 H 0.077 0.923 15 N -0.358 5.358 16 C -0.376 4.376 17 H 0.094 0.906 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.802 3.198 21 H -0.204 1.204 22 H -0.222 1.222 23 H -0.205 1.205 24 C -0.192 4.192 25 C -0.062 4.062 26 C -0.203 4.203 27 C -0.199 4.199 28 C -0.203 4.203 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.245 0.755 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.121 0.879 41 H 0.206 0.794 42 H 0.060 0.940 43 H 0.108 0.892 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.080 0.920 49 H 0.079 0.921 50 H 0.067 0.933 51 H 0.079 0.921 52 H 0.077 0.923 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.235 -7.754 20.647 26.250 hybrid contribution -0.150 0.343 -1.488 1.535 sum 14.085 -7.411 19.159 24.908 Atomic orbital electron populations 1.21897 0.96875 0.99823 1.01224 1.21692 0.94781 0.96216 1.02620 1.21001 0.94924 0.96013 0.95916 0.91896 1.21941 0.91269 1.03386 1.00966 1.21158 0.90580 0.76026 0.82758 1.90678 1.66625 1.55057 1.32786 1.46107 1.12598 1.66455 1.12545 1.21193 0.81669 0.99142 0.96082 1.22473 0.97160 0.96776 0.95587 0.90128 1.23347 0.95254 0.98521 1.00383 1.21411 0.95472 0.96588 0.83152 0.92292 1.42284 1.85044 1.08129 1.00294 1.19632 1.39600 0.90841 0.87477 0.90618 1.25550 1.03528 0.98516 0.99128 1.69801 1.57899 1.18786 1.15446 0.85221 0.78159 0.78403 0.78037 1.20392 1.22229 1.20478 1.23719 0.99633 0.95641 1.00235 1.20547 0.93339 0.95903 0.96386 1.21957 1.01257 0.95421 1.01622 1.21921 1.01371 1.00126 0.96467 1.21978 1.00436 1.00800 0.97049 0.94616 0.93768 0.93337 0.91225 0.90905 0.87585 0.87251 0.75530 0.91867 0.92409 0.92503 0.87855 0.79354 0.93996 0.89235 0.93307 0.93399 0.91867 0.92308 0.91966 0.92088 0.93324 0.92075 0.92283 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.22 71.98 0.59 -2.50 16 2 C -0.12 -1.92 4.66 30.59 0.14 -1.78 16 3 C -0.06 -0.98 1.24 -10.79 -0.01 -0.99 16 4 H 0.06 1.37 7.21 -2.39 -0.02 1.35 16 5 C -0.14 -2.19 3.93 29.85 0.12 -2.08 16 6 C 0.51 11.66 5.94 87.66 0.52 12.19 16 7 O -0.57 -16.96 12.29 -3.03 -0.04 -17.00 16 8 N -0.73 -16.10 5.56 -463.07 -2.57 -18.67 16 9 C 0.14 3.58 5.51 86.38 0.48 4.06 16 10 C -0.10 -2.87 3.63 -10.27 -0.04 -2.91 16 11 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 12 C -0.14 -4.17 7.38 31.12 0.23 -3.94 16 13 C 0.14 5.48 4.57 45.58 0.21 5.68 16 14 H 0.06 2.26 8.10 -2.39 -0.02 2.24 16 15 N -0.72 -35.46 5.31 -320.18 -1.70 -37.16 16 16 C -0.24 -13.35 9.97 84.03 0.84 -12.51 16 17 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 18 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 19 N -0.97 -58.40 13.06 21.65 0.28 -58.12 16 20 Si 0.97 45.54 29.55 68.60 2.03 47.56 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 22 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 24 C -0.15 -4.79 7.44 31.18 0.23 -4.56 16 25 C -0.06 -0.78 0.58 -52.18 -0.03 -0.81 16 26 C -0.15 -1.83 8.28 71.98 0.60 -1.24 16 27 C -0.14 -1.69 7.75 71.98 0.56 -1.13 16 28 C -0.15 -1.56 7.81 71.98 0.56 -1.00 16 29 H 0.03 0.87 5.78 -2.39 -0.01 0.86 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 1.26 6.87 -2.39 -0.02 1.25 16 32 H 0.07 1.01 6.80 -2.39 -0.02 0.99 16 33 H 0.07 1.09 6.06 -2.39 -0.01 1.08 16 34 H 0.11 1.39 7.26 -2.39 -0.02 1.37 16 35 H 0.11 1.49 5.99 -2.39 -0.01 1.47 16 36 H 0.41 7.77 8.47 -92.71 -0.79 6.99 16 37 H 0.06 1.63 7.85 -2.39 -0.02 1.61 16 38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.10 2.64 8.10 -2.39 -0.02 2.62 16 41 H 0.37 19.74 7.90 -92.71 -0.73 19.01 16 42 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 43 H 0.09 2.45 7.90 -2.39 -0.02 2.43 16 44 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 45 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.06 0.72 6.28 -2.39 -0.01 0.70 16 48 H 0.06 0.70 6.57 -2.38 -0.02 0.68 16 49 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 50 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 51 H 0.06 0.62 6.78 -2.39 -0.02 0.61 16 52 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 53 H 0.06 0.63 6.76 -2.39 -0.02 0.61 16 Total: -1.00 -65.12 397.76 2.82 -62.29 By element: Atomic # 1 Polarization: 39.02 SS G_CDS: -0.63 Total: 38.39 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: 5.46 Total: -17.29 kcal Atomic # 7 Polarization: -109.96 SS G_CDS: -3.99 Total: -113.95 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.04 Total: -17.00 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -65.12 2.82 -62.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691534194.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.504 kcal (2) G-P(sol) polarization free energy of solvation -65.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds