Wall clock time and date at job start Tue Mar 31 2020 10:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52989 * 109.47364 * 2 1 4 4 H 1.09000 * 109.47427 * 54.99792 * 3 2 1 5 5 C 1.53002 * 109.47210 * 174.99939 * 3 2 1 6 6 N 1.46501 * 109.46878 * 174.99532 * 5 3 2 7 7 C 1.34783 * 119.99840 * 179.97438 * 6 5 3 8 8 O 1.21285 * 119.99716 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.99937 * 180.02562 * 7 6 5 10 10 H 1.09002 * 109.47211 * 299.99762 * 9 7 6 11 11 C 1.52997 * 109.47294 * 60.00418 * 9 7 6 12 12 C 1.53002 * 109.46975 * 180.02562 * 9 7 6 13 13 C 1.52999 * 109.47223 * 174.22071 * 12 9 7 14 14 C 1.52992 * 109.47353 * 294.74472 * 13 12 9 15 15 C 1.52995 * 109.47503 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47147 * 60.00127 * 15 14 13 17 17 C 1.53004 * 109.47077 * 300.00361 * 16 15 14 18 18 C 1.52999 * 109.47277 * 59.99473 * 17 16 15 19 19 N 1.46508 * 109.46997 * 294.99946 * 3 2 1 20 20 C 1.36938 * 119.99986 * 85.00089 * 19 3 2 21 21 H 1.08001 * 119.99676 * 359.97438 * 20 19 3 22 22 C 1.38808 * 119.99784 * 180.02562 * 20 19 3 23 23 N 1.31615 * 120.00221 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99928 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47031 * 89.99597 * 24 22 20 26 26 H 1.48495 * 109.47022 * 209.99726 * 24 22 20 27 27 H 1.48497 * 109.47067 * 329.99877 * 24 22 20 28 28 H 1.09003 * 109.47531 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47337 * 300.00023 * 1 2 3 30 30 H 1.08997 * 109.47318 * 59.99980 * 1 2 3 31 31 H 1.08999 * 109.46777 * 239.99216 * 2 1 3 32 32 H 1.09002 * 109.46626 * 119.99989 * 2 1 3 33 33 H 1.09000 * 109.46983 * 54.99834 * 5 3 2 34 34 H 1.08996 * 109.47334 * 294.99487 * 5 3 2 35 35 H 0.96995 * 120.00684 * 0.02562 * 6 5 3 36 36 H 1.08995 * 109.47093 * 185.84581 * 11 9 7 37 37 H 1.08994 * 109.47352 * 305.85214 * 11 9 7 38 38 H 1.09002 * 109.47196 * 65.84938 * 11 9 7 39 39 H 1.09005 * 109.47199 * 54.22368 * 12 9 7 40 40 H 1.08996 * 109.47467 * 294.22598 * 12 9 7 41 41 H 1.09001 * 109.46933 * 54.74312 * 13 12 9 42 42 H 1.09005 * 109.47132 * 59.99651 * 14 13 12 43 43 H 1.09000 * 109.47660 * 300.00108 * 14 13 12 44 44 H 1.08999 * 109.48024 * 179.97438 * 15 14 13 45 45 H 1.08997 * 109.47397 * 300.00485 * 15 14 13 46 46 H 1.09001 * 109.47163 * 59.99945 * 16 15 14 47 47 H 1.08998 * 109.47517 * 180.02562 * 16 15 14 48 48 H 1.09001 * 109.46785 * 299.99816 * 17 16 15 49 49 H 1.08996 * 109.47432 * 179.97438 * 17 16 15 50 50 H 1.09001 * 109.47634 * 179.97438 * 18 17 16 51 51 H 1.09001 * 109.46933 * 60.00434 * 18 17 16 52 52 H 0.97001 * 120.00054 * 265.00073 * 19 3 2 53 53 H 0.97003 * 120.00269 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 7 4.0631 2.8166 0.0058 7 6 5.3857 3.0629 0.0867 8 8 6.1635 2.1482 0.2583 9 6 5.8982 4.4747 -0.0360 10 1 5.6135 4.8815 -1.0064 11 6 5.2935 5.3352 1.0752 12 6 7.4231 4.4765 0.0896 13 6 7.9552 5.8858 -0.1780 14 6 7.6740 6.2696 -1.6320 15 6 8.2055 7.6791 -1.8994 16 6 9.7141 7.7119 -1.6460 17 6 9.9954 7.3280 -0.1918 18 6 9.4637 5.9185 0.0756 19 7 1.6525 2.0974 -1.2519 20 6 0.4157 2.6734 -1.3689 21 1 -0.2742 2.6445 -0.5384 22 6 0.0483 3.2935 -2.5552 23 7 0.8889 3.3283 -3.5674 24 14 -1.6391 4.0787 -2.7151 25 1 -1.5673 5.4982 -2.2848 26 1 -2.0838 4.0123 -4.1303 27 1 -2.6075 3.3498 -1.8571 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5140 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 3.9954 0.8309 -0.6659 34 1 3.8499 1.0376 1.0960 35 1 3.4411 3.5482 -0.1310 36 1 5.5809 6.3759 0.9258 37 1 4.2071 5.2509 1.0495 38 1 5.6618 4.9917 2.0419 39 1 7.8483 3.7836 -0.6366 40 1 7.7051 4.1665 1.0958 41 1 7.4599 6.5934 0.4869 42 1 6.5992 6.2467 -1.8125 43 1 8.1692 5.5620 -2.2970 44 1 8.0056 7.9525 -2.9354 45 1 7.7100 8.3866 -1.2345 46 1 10.2096 7.0045 -2.3108 47 1 10.0927 8.7162 -1.8360 48 1 9.4998 8.0354 0.4730 49 1 11.0700 7.3509 -0.0114 50 1 9.6645 5.6448 1.1114 51 1 9.9593 5.2111 -0.5893 52 1 2.2720 2.1230 -1.9979 53 1 0.6323 3.7620 -4.3963 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698619766.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:00 Heat of formation + Delta-G solvation = -81.412273 kcal Electronic energy + Delta-G solvation = -26750.980897 eV Core-core repulsion = 23234.541243 eV Total energy + Delta-G solvation = -3516.439654 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.85769 -38.65201 -36.72610 -34.71959 -33.66002 -32.37747 -31.03072 -30.68938 -29.71503 -27.80595 -26.30279 -24.31144 -23.33705 -22.74964 -22.21947 -20.79335 -20.08941 -19.74383 -19.13862 -17.35022 -16.72195 -15.69178 -15.46502 -15.32363 -15.04428 -14.51861 -14.28556 -14.14051 -13.99665 -13.62952 -13.40405 -13.26473 -13.04873 -12.95577 -12.59674 -12.33594 -12.29388 -12.09356 -11.89540 -11.80445 -11.42521 -11.27893 -11.22985 -11.01768 -10.95456 -10.88705 -10.76707 -10.73431 -10.44254 -10.42721 -10.19901 -10.13039 -10.02869 -9.97368 -9.55206 -9.32901 -8.96217 -8.55211 -7.04591 -5.82909 -3.12006 3.04311 3.37928 3.44439 3.45780 3.63871 4.52347 4.53824 4.56600 4.64032 4.90879 4.97715 5.03414 5.16815 5.22321 5.32924 5.40822 5.41056 5.41969 5.43647 5.44405 5.52856 5.56945 5.60018 5.70435 5.84423 5.87430 5.90075 5.93104 5.94516 5.96453 5.98392 6.03282 6.04101 6.09553 6.15662 6.17718 6.20752 6.27468 6.39171 6.43293 6.49061 6.55885 6.58237 6.61866 6.95459 7.03845 7.23871 7.64902 8.02232 8.34418 8.66259 9.46388 10.01692 10.37781 11.38922 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.014389 B = 0.003116 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.505144 B = 8983.426807 C =10430.910532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.114 3.886 6 N -0.712 5.712 7 C 0.513 3.487 8 O -0.558 6.558 9 C -0.113 4.113 10 H 0.100 0.900 11 C -0.143 4.143 12 C -0.092 4.092 13 C -0.088 4.088 14 C -0.119 4.119 15 C -0.120 4.120 16 C -0.120 4.120 17 C -0.119 4.119 18 C -0.114 4.114 19 N -0.721 5.721 20 C -0.237 4.237 21 H 0.073 0.927 22 C -0.011 4.011 23 N -0.929 5.929 24 Si 0.902 3.098 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 H 0.032 0.968 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.410 0.590 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.060 0.940 49 H 0.058 0.942 50 H 0.060 0.940 51 H 0.061 0.939 52 H 0.385 0.615 53 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.173 6.581 7.826 17.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.010 4.010 6 N -0.363 5.363 7 C 0.299 3.701 8 O -0.437 6.437 9 C -0.134 4.134 10 H 0.118 0.882 11 C -0.201 4.201 12 C -0.130 4.130 13 C -0.106 4.106 14 C -0.157 4.157 15 C -0.157 4.157 16 C -0.157 4.157 17 C -0.156 4.156 18 C -0.151 4.151 19 N -0.363 5.363 20 C -0.368 4.368 21 H 0.091 0.909 22 C -0.207 4.207 23 N -0.577 5.577 24 Si 0.733 3.267 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.208 1.208 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.246 0.754 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.079 0.921 51 H 0.080 0.920 52 H 0.219 0.781 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.529 5.991 7.959 17.616 hybrid contribution -1.175 0.685 -0.584 1.480 sum 13.354 6.676 7.375 16.652 Atomic orbital electron populations 1.21769 0.95742 0.99613 1.03235 1.22068 0.96938 0.98471 0.99993 1.20559 0.90046 0.92735 0.91365 0.92934 1.21641 0.95510 0.82979 1.00890 1.46007 1.07301 1.10568 1.72452 1.20616 0.82371 0.91005 0.76063 1.90643 1.56179 1.46709 1.50140 1.21352 0.97160 0.93115 1.01793 0.88210 1.21806 1.01078 0.99586 0.97627 1.21419 0.92622 0.96188 1.02765 1.21225 0.95522 0.96929 0.96937 1.21670 1.01248 0.96445 0.96287 1.21531 0.95558 0.97388 1.01232 1.21542 0.96528 1.00919 0.96745 1.21529 1.00285 0.97108 0.96702 1.21570 0.95508 0.96742 1.01321 1.42456 1.16761 1.65834 1.11296 1.19200 0.91947 1.27676 0.97945 0.90948 1.24724 0.98026 1.01618 0.96374 1.69659 1.35198 1.48898 1.03963 0.86269 0.84196 0.79310 0.76882 1.21777 1.21881 1.20780 0.94900 0.94143 0.89672 0.92551 0.93889 0.92011 0.92079 0.75384 0.91549 0.91910 0.92356 0.91195 0.91548 0.90950 0.91479 0.91928 0.92147 0.92123 0.92120 0.92446 0.92161 0.92372 0.92123 0.91997 0.78099 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.18 37.16 0.34 -2.27 16 2 C -0.13 -2.32 5.61 -26.74 -0.15 -2.47 16 3 C 0.16 3.02 2.59 -67.93 -0.18 2.84 16 4 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 5 C 0.11 1.97 5.23 -4.04 -0.02 1.95 16 6 N -0.71 -11.86 5.24 -60.29 -0.32 -12.18 16 7 C 0.51 8.47 7.15 -10.98 -0.08 8.39 16 8 O -0.56 -10.89 15.90 5.55 0.09 -10.80 16 9 C -0.11 -1.45 2.60 -91.77 -0.24 -1.69 16 10 H 0.10 1.28 6.32 -51.93 -0.33 0.95 16 11 C -0.14 -1.58 8.78 37.16 0.33 -1.25 16 12 C -0.09 -1.10 3.50 -26.73 -0.09 -1.19 16 13 C -0.09 -0.85 2.06 -90.62 -0.19 -1.04 16 14 C -0.12 -1.19 4.97 -26.74 -0.13 -1.32 16 15 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 16 C -0.12 -0.98 5.92 -26.73 -0.16 -1.13 16 17 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 18 C -0.11 -1.02 5.20 -26.73 -0.14 -1.16 16 19 N -0.72 -16.32 4.51 -53.43 -0.24 -16.56 16 20 C -0.24 -5.95 7.75 -15.06 -0.12 -6.06 16 21 H 0.07 1.78 7.32 -52.49 -0.38 1.40 16 22 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 23 N -0.93 -26.50 13.06 55.49 0.72 -25.78 16 24 Si 0.90 21.32 29.55 -169.99 -5.02 16.29 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.80 5.99 -51.93 -0.31 1.49 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.41 6.89 7.49 -40.82 -0.31 6.59 16 36 H 0.07 0.63 6.76 -51.93 -0.35 0.28 16 37 H 0.06 0.72 7.40 -51.93 -0.38 0.33 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.94 7.93 -51.93 -0.41 0.53 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.68 6.49 -51.93 -0.34 0.34 16 42 H 0.07 0.71 6.46 -51.93 -0.34 0.38 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 51 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.38 9.58 7.80 -40.82 -0.32 9.26 16 53 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 402.27 15.07 6.06 6.06 Total: -1.00 -28.40 402.27 -10.15 -38.55 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: -10.21 Total: 13.56 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -1.24 Total: -9.14 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: 0.17 Total: -54.52 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -28.40 -10.15 -38.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698619766.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.864 kcal (2) G-P(sol) polarization free energy of solvation -28.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds