Wall clock time and date at job start Tue Mar 31 2020 10:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46871 * 2 1 4 4 H 1.08990 * 109.47355 * 304.99798 * 3 2 1 5 5 C 1.53005 * 109.47165 * 65.00306 * 3 2 1 6 6 C 1.53000 * 109.46776 * 184.99808 * 3 2 1 7 7 C 1.50703 * 109.46912 * 175.00090 * 6 3 2 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 3 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 3 10 10 C 1.46496 * 120.00271 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.47199 * 324.99664 * 10 9 7 12 12 C 1.53002 * 109.47076 * 204.99915 * 10 9 7 13 13 N 1.46494 * 109.47228 * 54.99546 * 12 10 9 14 14 C 1.36939 * 119.99788 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00099 * 0.02562 * 14 13 12 16 16 C 1.38819 * 119.99919 * 180.02562 * 14 13 12 17 17 N 1.31616 * 120.00082 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 119.99868 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46934 * 90.00308 * 18 16 14 20 20 H 1.48495 * 109.47545 * 210.00184 * 18 16 14 21 21 H 1.48501 * 109.47534 * 330.00804 * 18 16 14 22 22 C 1.52996 * 109.47084 * 84.99619 * 10 9 7 23 23 C 1.53002 * 109.47501 * 60.00276 * 22 10 9 24 24 C 1.52996 * 109.47501 * 179.97438 * 23 22 10 25 25 C 1.53001 * 109.47161 * 59.99518 * 24 23 22 26 26 C 1.53000 * 109.47027 * 300.00345 * 25 24 23 27 27 C 1.52998 * 109.47467 * 60.00206 * 26 25 24 28 28 H 1.09001 * 109.47215 * 59.99942 * 1 2 3 29 29 H 1.09001 * 109.47048 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47362 * 299.99912 * 1 2 3 31 31 H 1.08993 * 109.46856 * 239.99957 * 2 1 3 32 32 H 1.09001 * 109.46973 * 119.99563 * 2 1 3 33 33 H 1.09001 * 109.47099 * 179.97438 * 5 3 2 34 34 H 1.09004 * 109.46908 * 299.99702 * 5 3 2 35 35 H 1.09000 * 109.47443 * 59.99545 * 5 3 2 36 36 H 1.09002 * 109.47398 * 295.00168 * 6 3 2 37 37 H 1.09001 * 109.47194 * 55.00349 * 6 3 2 38 38 H 0.97005 * 119.99463 * 359.97438 * 9 7 6 39 39 H 1.08996 * 109.46886 * 175.00116 * 12 10 9 40 40 H 1.09005 * 109.46803 * 294.99238 * 12 10 9 41 41 H 0.96995 * 120.00299 * 0.02562 * 13 12 10 42 42 H 0.96998 * 120.00177 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.47057 * 180.02562 * 22 10 9 44 44 H 1.09000 * 109.46789 * 299.99948 * 23 22 10 45 45 H 1.09002 * 109.46681 * 59.99422 * 23 22 10 46 46 H 1.09004 * 109.46647 * 300.00082 * 24 23 22 47 47 H 1.08993 * 109.46981 * 180.02562 * 24 23 22 48 48 H 1.09004 * 109.46758 * 180.02562 * 25 24 23 49 49 H 1.09000 * 109.46918 * 60.00181 * 25 24 23 50 50 H 1.09000 * 109.47137 * 299.99701 * 26 25 24 51 51 H 1.09002 * 109.46402 * 180.02562 * 26 25 24 52 52 H 1.08992 * 109.46920 * 179.97438 * 27 26 25 53 53 H 1.09004 * 109.46943 * 59.99329 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4443 -0.1257 7 6 4.0569 2.8634 -0.2492 8 8 3.2659 3.7827 -0.2383 9 7 5.3760 3.1109 -0.3728 10 6 5.8545 4.4903 -0.4923 11 1 5.1320 5.0777 -1.0589 12 6 7.2017 4.5018 -1.2173 13 7 7.0693 3.8158 -2.5049 14 6 8.1531 3.7005 -3.3340 15 1 9.1055 4.1150 -3.0384 16 6 8.0274 3.0510 -4.5543 17 7 9.0692 2.9397 -5.3510 18 14 6.3802 2.3335 -5.0652 19 1 5.6047 3.3567 -5.8116 20 1 6.6036 1.1505 -5.9345 21 1 5.6224 1.9232 -3.8558 22 6 6.0210 5.0950 0.9032 23 6 7.0352 4.2706 1.6986 24 6 7.2023 4.8757 3.0939 25 6 5.8551 4.8648 3.8191 26 6 4.8410 5.6892 3.0237 27 6 4.6739 5.0841 1.6285 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.9989 3.1541 1.3076 34 1 0.5489 2.1253 1.3970 35 1 2.0698 1.5875 2.1492 36 1 4.0029 0.9836 0.7597 37 1 3.8570 0.8801 -1.0113 38 1 6.0086 2.3755 -0.3819 39 1 7.5153 5.5321 -1.3850 40 1 7.9467 3.9901 -0.6079 41 1 6.2139 3.4432 -2.7702 42 1 8.9815 2.4855 -6.2035 43 1 6.3766 6.1215 0.8143 44 1 6.6792 3.2442 1.7875 45 1 7.9951 4.2788 1.1821 46 1 7.5585 5.9020 3.0045 47 1 7.9251 4.2886 3.6603 48 1 5.9741 5.2963 4.8130 49 1 5.4989 3.8385 3.9085 50 1 5.1972 6.7155 2.9344 51 1 3.8814 5.6817 3.5407 52 1 3.9511 5.6712 1.0620 53 1 4.3177 4.0578 1.7178 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698880766.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:25 Heat of formation + Delta-G solvation = -69.489815 kcal Electronic energy + Delta-G solvation = -27933.532933 eV Core-core repulsion = 24417.610276 eV Total energy + Delta-G solvation = -3515.922658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.34520 -38.39279 -36.49209 -35.65162 -33.66243 -31.78560 -31.00161 -30.64124 -30.47597 -27.90686 -27.06524 -24.33539 -23.65166 -22.67841 -21.55165 -20.99017 -20.15764 -19.78676 -19.31482 -17.74422 -16.75491 -15.99942 -15.81082 -15.15911 -14.83280 -14.60177 -14.45685 -14.21054 -14.06037 -13.88881 -13.71219 -13.42497 -13.11283 -12.79858 -12.58678 -12.51229 -12.34717 -12.06641 -12.00653 -11.91644 -11.82206 -11.42153 -11.15404 -11.07734 -11.02205 -10.90820 -10.86001 -10.80172 -10.69449 -10.62387 -10.38751 -10.22726 -10.13473 -9.73645 -9.63226 -9.40624 -8.93649 -8.63412 -7.27871 -5.80968 -3.16794 2.89505 3.33080 3.38366 3.42295 3.45970 4.55371 4.68287 4.71046 4.74681 4.78832 4.79802 4.83396 5.10654 5.18060 5.21511 5.26602 5.35458 5.41475 5.45644 5.48701 5.53380 5.57426 5.58767 5.61075 5.62357 5.70752 5.73236 5.74349 5.77448 5.85428 5.89227 5.95420 5.97671 6.01158 6.08818 6.11910 6.15833 6.25580 6.26235 6.34808 6.38280 6.41349 6.46059 6.48889 6.59821 6.66899 6.90651 7.81053 7.94903 8.37748 8.51368 9.16958 9.89174 10.08812 11.37298 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.008540 B = 0.005655 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3277.948994 B = 4949.915139 C = 7737.697872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.074 4.074 4 H 0.077 0.923 5 C -0.152 4.152 6 C -0.142 4.142 7 C 0.512 3.488 8 O -0.540 6.540 9 N -0.714 5.714 10 C 0.139 3.861 11 H 0.086 0.914 12 C 0.147 3.853 13 N -0.754 5.754 14 C -0.246 4.246 15 H 0.090 0.910 16 C 0.007 3.993 17 N -0.933 5.933 18 Si 0.884 3.116 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.278 1.278 22 C -0.092 4.092 23 C -0.115 4.115 24 C -0.118 4.118 25 C -0.117 4.117 26 C -0.120 4.120 27 C -0.103 4.103 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.402 0.598 39 H 0.039 0.961 40 H 0.037 0.963 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.076 0.924 44 H 0.060 0.940 45 H 0.069 0.931 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.054 0.946 49 H 0.057 0.943 50 H 0.057 0.943 51 H 0.055 0.945 52 H 0.067 0.933 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.189 -1.988 18.538 22.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.093 4.093 4 H 0.096 0.904 5 C -0.209 4.209 6 C -0.182 4.182 7 C 0.299 3.701 8 O -0.418 6.418 9 N -0.365 5.365 10 C 0.034 3.966 11 H 0.104 0.896 12 C 0.020 3.980 13 N -0.400 5.400 14 C -0.375 4.375 15 H 0.108 0.892 16 C -0.189 4.189 17 N -0.580 5.580 18 Si 0.714 3.286 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.205 1.205 22 C -0.112 4.112 23 C -0.153 4.153 24 C -0.155 4.155 25 C -0.155 4.155 26 C -0.158 4.158 27 C -0.141 4.141 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.237 0.763 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.075 0.925 50 H 0.076 0.924 51 H 0.073 0.927 52 H 0.085 0.915 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.506 -1.299 18.445 22.323 hybrid contribution -0.678 -0.971 -0.598 1.327 sum -13.184 -2.271 17.847 22.304 Atomic orbital electron populations 1.21801 0.95872 1.01271 1.02017 1.21602 0.96040 0.96372 1.01863 1.20886 0.92899 0.95731 0.99798 0.90445 1.21986 1.00826 1.02298 0.95781 1.21792 0.97616 0.94686 1.04068 1.20539 0.82362 0.91359 0.75810 1.90640 1.54713 1.46361 1.50040 1.46057 1.07402 1.09323 1.73711 1.21325 0.97237 0.82650 0.95383 0.89606 1.21013 0.93025 0.96979 0.87021 1.42693 1.10537 1.68710 1.18108 1.19047 0.90425 1.30873 0.97200 0.89173 1.24654 0.96695 1.00737 0.96823 1.69696 1.28647 1.48128 1.11572 0.86569 0.84828 0.79000 0.78179 1.21127 1.21736 1.20457 1.21500 0.95978 0.99582 0.94164 1.21632 0.99405 0.99247 0.95009 1.21520 0.96739 1.00999 0.96264 1.21520 0.95681 1.00125 0.98151 1.21573 0.98449 0.99215 0.96536 1.21611 0.96449 1.01551 0.94488 0.92753 0.93032 0.92482 0.92026 0.92089 0.90482 0.93037 0.93709 0.89272 0.89059 0.76312 0.94290 0.94556 0.80455 0.93027 0.90581 0.92150 0.91195 0.92170 0.92430 0.92734 0.92452 0.92421 0.92669 0.91469 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.67 37.16 0.36 -0.95 16 2 C -0.12 -1.12 5.40 -26.73 -0.14 -1.27 16 3 C -0.07 -0.82 2.04 -90.62 -0.18 -1.00 16 4 H 0.08 1.00 7.95 -51.93 -0.41 0.59 16 5 C -0.15 -1.65 8.69 37.16 0.32 -1.33 16 6 C -0.14 -1.61 5.17 -27.88 -0.14 -1.75 16 7 C 0.51 7.25 5.90 -10.98 -0.06 7.19 16 8 O -0.54 -8.83 11.10 5.56 0.06 -8.77 16 9 N -0.71 -10.12 3.64 -53.81 -0.20 -10.32 16 10 C 0.14 2.11 2.16 -67.93 -0.15 1.97 16 11 H 0.09 1.49 7.58 -51.93 -0.39 1.10 16 12 C 0.15 2.66 5.60 -4.04 -0.02 2.64 16 13 N -0.75 -17.25 5.24 -59.91 -0.31 -17.57 16 14 C -0.25 -6.79 10.47 -15.06 -0.16 -6.95 16 15 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 16 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 17 N -0.93 -29.00 13.97 55.49 0.78 -28.23 16 18 Si 0.88 22.08 27.73 -169.99 -4.71 17.37 16 19 H -0.28 -7.22 7.11 56.52 0.40 -6.81 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.28 -6.48 6.52 56.52 0.37 -6.12 16 22 C -0.09 -1.17 2.07 -90.62 -0.19 -1.36 16 23 C -0.12 -1.34 4.70 -26.73 -0.13 -1.46 16 24 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 25 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 26 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 27 C -0.10 -1.30 3.73 -26.73 -0.10 -1.40 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.47 6.57 -51.93 -0.34 0.13 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 1.00 5.95 -51.93 -0.31 0.69 16 34 H 0.05 0.52 6.57 -51.93 -0.34 0.18 16 35 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.40 5.45 8.60 -40.82 -0.35 5.10 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.04 0.64 6.17 -51.93 -0.32 0.32 16 41 H 0.36 8.30 5.20 -40.82 -0.21 8.09 16 42 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.06 0.70 7.60 -51.93 -0.39 0.31 16 45 H 0.07 0.86 6.32 -51.93 -0.33 0.53 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 51 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 52 H 0.07 0.97 7.53 -51.93 -0.39 0.58 16 53 H 0.06 0.84 5.78 -51.93 -0.30 0.54 16 LS Contribution 391.61 15.07 5.90 5.90 Total: -1.00 -30.72 391.61 -9.68 -40.40 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -10.03 Total: 10.92 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -1.17 Total: -9.71 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.27 Total: -56.11 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.06 Total: -8.77 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.71 Total: 17.37 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.72 -9.68 -40.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698880766.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.087 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds