Wall clock time and date at job start Tue Mar 31 2020 10:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46871 * 2 1 4 4 H 1.08990 * 109.47355 * 304.99798 * 3 2 1 5 5 C 1.53005 * 109.47165 * 65.00306 * 3 2 1 6 6 C 1.53000 * 109.46776 * 184.99808 * 3 2 1 7 7 C 1.50703 * 109.46912 * 175.00090 * 6 3 2 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 3 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 3 10 10 C 1.46496 * 120.00271 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.47199 * 324.99664 * 10 9 7 12 12 C 1.53002 * 109.47076 * 204.99915 * 10 9 7 13 13 N 1.46494 * 109.47228 * 54.99546 * 12 10 9 14 14 C 1.36939 * 119.99788 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00099 * 0.02562 * 14 13 12 16 16 C 1.38819 * 119.99919 * 180.02562 * 14 13 12 17 17 N 1.31616 * 120.00082 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 119.99868 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46934 * 90.00308 * 18 16 14 20 20 H 1.48495 * 109.47545 * 210.00184 * 18 16 14 21 21 H 1.48501 * 109.47534 * 330.00804 * 18 16 14 22 22 C 1.52996 * 109.47084 * 84.99619 * 10 9 7 23 23 C 1.53002 * 109.47501 * 60.00276 * 22 10 9 24 24 C 1.52996 * 109.47501 * 179.97438 * 23 22 10 25 25 C 1.53001 * 109.47161 * 59.99518 * 24 23 22 26 26 C 1.53000 * 109.47027 * 300.00345 * 25 24 23 27 27 C 1.52998 * 109.47467 * 60.00206 * 26 25 24 28 28 H 1.09001 * 109.47215 * 59.99942 * 1 2 3 29 29 H 1.09001 * 109.47048 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47362 * 299.99912 * 1 2 3 31 31 H 1.08993 * 109.46856 * 239.99957 * 2 1 3 32 32 H 1.09001 * 109.46973 * 119.99563 * 2 1 3 33 33 H 1.09001 * 109.47099 * 179.97438 * 5 3 2 34 34 H 1.09004 * 109.46908 * 299.99702 * 5 3 2 35 35 H 1.09000 * 109.47443 * 59.99545 * 5 3 2 36 36 H 1.09002 * 109.47398 * 295.00168 * 6 3 2 37 37 H 1.09001 * 109.47194 * 55.00349 * 6 3 2 38 38 H 0.97005 * 119.99463 * 359.97438 * 9 7 6 39 39 H 1.08996 * 109.46886 * 175.00116 * 12 10 9 40 40 H 1.09005 * 109.46803 * 294.99238 * 12 10 9 41 41 H 0.96995 * 120.00299 * 0.02562 * 13 12 10 42 42 H 0.96998 * 120.00177 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.47057 * 180.02562 * 22 10 9 44 44 H 1.09000 * 109.46789 * 299.99948 * 23 22 10 45 45 H 1.09002 * 109.46681 * 59.99422 * 23 22 10 46 46 H 1.09004 * 109.46647 * 300.00082 * 24 23 22 47 47 H 1.08993 * 109.46981 * 180.02562 * 24 23 22 48 48 H 1.09004 * 109.46758 * 180.02562 * 25 24 23 49 49 H 1.09000 * 109.46918 * 60.00181 * 25 24 23 50 50 H 1.09000 * 109.47137 * 299.99701 * 26 25 24 51 51 H 1.09002 * 109.46402 * 180.02562 * 26 25 24 52 52 H 1.08992 * 109.46920 * 179.97438 * 27 26 25 53 53 H 1.09004 * 109.46943 * 59.99329 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4443 -0.1257 7 6 4.0569 2.8634 -0.2492 8 8 3.2659 3.7827 -0.2383 9 7 5.3760 3.1109 -0.3728 10 6 5.8545 4.4903 -0.4923 11 1 5.1320 5.0777 -1.0589 12 6 7.2017 4.5018 -1.2173 13 7 7.0693 3.8158 -2.5049 14 6 8.1531 3.7005 -3.3340 15 1 9.1055 4.1150 -3.0384 16 6 8.0274 3.0510 -4.5543 17 7 9.0692 2.9397 -5.3510 18 14 6.3802 2.3335 -5.0652 19 1 5.6047 3.3567 -5.8116 20 1 6.6036 1.1505 -5.9345 21 1 5.6224 1.9232 -3.8558 22 6 6.0210 5.0950 0.9032 23 6 7.0352 4.2706 1.6986 24 6 7.2023 4.8757 3.0939 25 6 5.8551 4.8648 3.8191 26 6 4.8410 5.6892 3.0237 27 6 4.6739 5.0841 1.6285 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.9989 3.1541 1.3076 34 1 0.5489 2.1253 1.3970 35 1 2.0698 1.5875 2.1492 36 1 4.0029 0.9836 0.7597 37 1 3.8570 0.8801 -1.0113 38 1 6.0086 2.3755 -0.3819 39 1 7.5153 5.5321 -1.3850 40 1 7.9467 3.9901 -0.6079 41 1 6.2139 3.4432 -2.7702 42 1 8.9815 2.4855 -6.2035 43 1 6.3766 6.1215 0.8143 44 1 6.6792 3.2442 1.7875 45 1 7.9951 4.2788 1.1821 46 1 7.5585 5.9020 3.0045 47 1 7.9251 4.2886 3.6603 48 1 5.9741 5.2963 4.8130 49 1 5.4989 3.8385 3.9085 50 1 5.1972 6.7155 2.9344 51 1 3.8814 5.6817 3.5407 52 1 3.9511 5.6712 1.0620 53 1 4.3177 4.0578 1.7178 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698880766.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:24 Heat of formation + Delta-G solvation = -86.579825 kcal Electronic energy + Delta-G solvation = -27934.274012 eV Core-core repulsion = 24417.610276 eV Total energy + Delta-G solvation = -3516.663736 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.47246 -39.40260 -37.50924 -36.96314 -35.29990 -33.36155 -32.45208 -31.59445 -31.30927 -29.09308 -28.26271 -25.58971 -24.77802 -23.87491 -22.90444 -22.07808 -21.21900 -20.69627 -20.35565 -19.72469 -17.88869 -17.19270 -16.97194 -16.41220 -16.05548 -15.87049 -15.66323 -15.41205 -14.99606 -14.94356 -14.83863 -14.63886 -14.48979 -14.09921 -13.84029 -13.68634 -13.48079 -13.38324 -12.98512 -12.90840 -12.78115 -12.75190 -12.50216 -12.30447 -12.19733 -12.01033 -11.96180 -11.87889 -11.80887 -11.72291 -11.52682 -11.39531 -11.30877 -11.16429 -11.02082 -10.74267 -10.49886 -9.81380 -9.30954 -8.04281 -5.37244 1.33336 1.37736 1.43812 1.78992 2.33428 2.45213 3.28169 3.46670 3.75463 3.84151 3.86503 3.88413 3.98367 4.01593 4.13789 4.27904 4.32959 4.44202 4.48975 4.51009 4.55430 4.62619 4.67831 4.70074 4.71299 4.75818 4.76592 4.83466 4.84473 4.89997 4.94440 5.06304 5.14535 5.15210 5.18553 5.23544 5.25543 5.27994 5.33195 5.34869 5.36128 5.44561 5.51740 5.55514 5.61173 5.62430 5.72884 5.76186 6.19368 6.68597 7.05877 7.40055 7.81472 8.00156 9.17136 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.008540 B = 0.005655 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3277.948994 B = 4949.915139 C = 7737.697872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.072 4.072 4 H 0.053 0.947 5 C -0.146 4.146 6 C -0.138 4.138 7 C 0.508 3.492 8 O -0.564 6.564 9 N -0.713 5.713 10 C 0.151 3.849 11 H 0.062 0.938 12 C 0.148 3.852 13 N -0.755 5.755 14 C -0.231 4.231 15 H 0.062 0.938 16 C -0.057 4.057 17 N -0.981 5.981 18 Si 0.948 3.052 19 H -0.289 1.289 20 H -0.293 1.293 21 H -0.251 1.251 22 C -0.085 4.085 23 C -0.111 4.111 24 C -0.115 4.115 25 C -0.113 4.113 26 C -0.117 4.117 27 C -0.094 4.094 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.407 0.593 39 H 0.035 0.965 40 H 0.049 0.951 41 H 0.364 0.636 42 H 0.258 0.742 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.057 0.943 50 H 0.060 0.940 51 H 0.059 0.941 52 H 0.043 0.957 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.457 -3.220 20.776 24.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.091 4.091 4 H 0.071 0.929 5 C -0.203 4.203 6 C -0.177 4.177 7 C 0.297 3.703 8 O -0.444 6.444 9 N -0.365 5.365 10 C 0.046 3.954 11 H 0.080 0.920 12 C 0.021 3.979 13 N -0.401 5.401 14 C -0.362 4.362 15 H 0.080 0.920 16 C -0.249 4.249 17 N -0.632 5.632 18 Si 0.776 3.224 19 H -0.216 1.216 20 H -0.220 1.220 21 H -0.176 1.176 22 C -0.105 4.105 23 C -0.149 4.149 24 C -0.153 4.153 25 C -0.151 4.151 26 C -0.155 4.155 27 C -0.131 4.131 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.132 0.868 37 H 0.115 0.885 38 H 0.243 0.757 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.197 0.803 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.088 0.912 49 H 0.076 0.924 50 H 0.079 0.921 51 H 0.078 0.922 52 H 0.062 0.938 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.793 -2.527 20.737 25.034 hybrid contribution -0.245 -0.492 -1.247 1.363 sum -14.038 -3.019 19.490 24.209 Atomic orbital electron populations 1.21807 0.95504 1.01950 1.01748 1.21571 0.96357 0.94936 1.02572 1.20857 0.92634 0.96762 0.98889 0.92875 1.21908 1.01213 1.00962 0.96230 1.21841 0.97811 0.92629 1.05438 1.21076 0.81874 0.92396 0.74994 1.90644 1.55239 1.47483 1.51010 1.46039 1.07775 1.08847 1.73790 1.21067 0.94700 0.83424 0.96236 0.91959 1.21149 0.95189 0.96167 0.85369 1.42676 1.09237 1.69041 1.19142 1.19038 0.90580 1.29006 0.97536 0.92043 1.25388 1.00263 1.02114 0.97138 1.69862 1.31145 1.49978 1.12178 0.85518 0.80570 0.77805 0.78490 1.21636 1.21955 1.17576 1.21434 0.96694 0.99649 0.92766 1.21587 0.98342 0.99222 0.95740 1.21509 0.97306 1.01174 0.95286 1.21494 0.94934 1.00027 0.98606 1.21551 0.99198 0.99411 0.95340 1.21466 0.95439 1.00848 0.95383 0.93570 0.91873 0.92265 0.91919 0.90720 0.92887 0.92502 0.92313 0.86775 0.88548 0.75715 0.94746 0.93317 0.80264 0.93343 0.90521 0.91906 0.91935 0.92000 0.91266 0.91210 0.92420 0.92127 0.92198 0.93808 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.67 71.98 0.70 -1.62 16 2 C -0.12 -1.87 5.40 30.60 0.17 -1.70 16 3 C -0.07 -1.48 2.04 -10.79 -0.02 -1.50 16 4 H 0.05 1.34 7.95 -2.39 -0.02 1.32 16 5 C -0.15 -2.95 8.69 71.98 0.63 -2.32 16 6 C -0.14 -2.81 5.17 29.85 0.15 -2.66 16 7 C 0.51 13.78 5.90 87.66 0.52 14.30 16 8 O -0.56 -18.38 11.10 -3.02 -0.03 -18.41 16 9 N -0.71 -19.28 3.64 -442.54 -1.61 -20.89 16 10 C 0.15 4.51 2.16 44.99 0.10 4.61 16 11 H 0.06 2.18 7.58 -2.39 -0.02 2.16 16 12 C 0.15 5.26 5.60 86.38 0.48 5.74 16 13 N -0.76 -34.09 5.24 -343.46 -1.80 -35.89 16 14 C -0.23 -12.85 10.47 84.03 0.88 -11.97 16 15 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 16 C -0.06 -3.33 5.50 84.86 0.47 -2.86 16 17 N -0.98 -62.23 13.97 21.65 0.30 -61.93 16 18 Si 0.95 45.53 27.73 68.60 1.90 47.44 16 19 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 20 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 21 H -0.25 -10.78 6.52 99.48 0.65 -10.13 16 22 C -0.09 -2.09 2.07 -10.79 -0.02 -2.11 16 23 C -0.11 -2.37 4.70 30.59 0.14 -2.23 16 24 C -0.12 -2.06 5.92 30.59 0.18 -1.87 16 25 C -0.11 -1.93 5.92 30.59 0.18 -1.75 16 26 C -0.12 -2.31 5.92 30.59 0.18 -2.13 16 27 C -0.09 -2.28 3.73 30.59 0.11 -2.17 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.86 6.57 -2.39 -0.02 0.85 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.05 1.34 5.95 -2.39 -0.01 1.33 16 34 H 0.06 1.06 6.57 -2.38 -0.02 1.04 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.41 10.25 8.60 -92.70 -0.80 9.45 16 39 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.05 1.66 6.17 -2.38 -0.01 1.65 16 41 H 0.36 16.19 5.20 -92.71 -0.48 15.71 16 42 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 43 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.06 1.32 7.60 -2.39 -0.02 1.30 16 45 H 0.06 1.43 6.32 -2.39 -0.02 1.41 16 46 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.07 1.01 8.14 -2.38 -0.02 1.00 16 49 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 52 H 0.04 1.27 7.53 -2.39 -0.02 1.25 16 53 H 0.06 1.43 5.78 -2.39 -0.01 1.42 16 Total: -1.00 -66.88 391.61 3.14 -63.74 By element: Atomic # 1 Polarization: 38.66 SS G_CDS: -0.47 Total: 38.20 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 4.84 Total: -12.25 kcal Atomic # 7 Polarization: -115.60 SS G_CDS: -3.11 Total: -118.71 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.03 Total: -18.41 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.90 Total: 47.44 kcal Total: -66.88 3.14 -63.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698880766.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.838 kcal (2) G-P(sol) polarization free energy of solvation -66.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds