Wall clock time and date at job start Tue Mar 31 2020 10:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46510 * 2 1 4 4 H 1.09001 * 109.47407 * 304.80297 * 3 2 1 5 5 C 1.53001 * 109.46715 * 184.80462 * 3 2 1 6 6 C 1.50697 * 109.47138 * 65.00304 * 5 3 2 7 7 O 1.21282 * 120.00451 * 359.97438 * 6 5 3 8 8 N 1.34782 * 119.99941 * 179.97438 * 6 5 3 9 9 C 1.46926 * 120.63030 * 359.97438 * 8 6 5 10 10 C 1.53187 * 108.89088 * 233.51759 * 9 8 6 11 11 C 1.53079 * 109.29489 * 305.57397 * 10 9 8 12 12 C 1.53038 * 109.65392 * 61.16051 * 11 10 9 13 13 H 1.08999 * 109.50362 * 58.64825 * 12 11 10 14 14 N 1.46501 * 109.52464 * 178.73343 * 12 11 10 15 15 C 1.46500 * 120.00139 * 59.84612 * 14 12 11 16 16 C 1.36941 * 120.00129 * 239.85651 * 14 12 11 17 17 H 1.07999 * 119.99641 * 24.44344 * 16 14 12 18 18 C 1.38807 * 119.99985 * 204.45461 * 16 14 12 19 19 N 1.31618 * 120.00298 * 10.94106 * 18 16 14 20 20 Si 1.86804 * 120.00114 * 190.94918 * 18 16 14 21 21 H 1.48507 * 109.46997 * 59.99317 * 20 18 16 22 22 H 1.48492 * 109.47212 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46573 * 299.99727 * 20 18 16 24 24 C 1.46924 * 120.62867 * 179.97438 * 8 6 5 25 25 C 1.52993 * 109.47375 * 64.80584 * 3 2 1 26 26 C 1.52997 * 109.47550 * 63.79050 * 25 3 2 27 27 C 1.52997 * 109.47348 * 183.79139 * 25 3 2 28 28 H 1.09007 * 109.46720 * 182.20742 * 1 2 3 29 29 H 1.08992 * 109.47352 * 302.20249 * 1 2 3 30 30 H 1.08996 * 109.47064 * 62.21417 * 1 2 3 31 31 H 1.09000 * 109.46942 * 240.00406 * 2 1 3 32 32 H 1.08996 * 109.47216 * 119.99612 * 2 1 3 33 33 H 1.08997 * 109.47316 * 304.99869 * 5 3 2 34 34 H 1.09006 * 109.46996 * 184.99752 * 5 3 2 35 35 H 1.08999 * 109.58562 * 353.37612 * 9 8 6 36 36 H 1.09001 * 109.58652 * 113.65537 * 9 8 6 37 37 H 1.08994 * 109.50233 * 65.38859 * 10 9 8 38 38 H 1.09009 * 109.49893 * 185.48914 * 10 9 8 39 39 H 1.08996 * 109.34647 * 301.13028 * 11 10 9 40 40 H 1.09001 * 109.45148 * 181.24682 * 11 10 9 41 41 H 1.09000 * 109.47046 * 86.63844 * 15 14 12 42 42 H 1.09004 * 109.47425 * 206.63743 * 15 14 12 43 43 H 1.09000 * 109.47441 * 326.64176 * 15 14 12 44 44 H 0.97000 * 120.00713 * 180.02562 * 19 18 16 45 45 H 1.09001 * 109.58930 * 246.19608 * 24 8 6 46 46 H 1.09000 * 109.58936 * 6.62771 * 24 8 6 47 47 H 1.09000 * 109.47335 * 303.79260 * 25 3 2 48 48 H 1.09003 * 109.47107 * 59.99614 * 26 25 3 49 49 H 1.08994 * 109.47907 * 179.97438 * 26 25 3 50 50 H 1.09003 * 109.47118 * 300.00348 * 26 25 3 51 51 H 1.09001 * 109.47204 * 60.92699 * 27 25 3 52 52 H 1.09000 * 109.47847 * 180.92558 * 27 25 3 53 53 H 1.08999 * 109.47240 * 300.92793 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6080 1.9806 -0.8438 5 6 3.5651 1.4443 -0.1208 6 6 3.9636 0.8807 -1.4604 7 8 3.1116 0.5132 -2.2415 8 7 5.2668 0.7849 -1.7906 9 6 6.3104 1.2263 -0.8553 10 6 7.2302 2.2201 -1.5715 11 6 7.7630 1.5806 -2.8563 12 6 6.5951 1.2425 -3.7857 13 1 6.0378 2.1508 -4.0149 14 7 7.1102 0.6586 -5.0267 15 6 7.8992 -0.5750 -4.9835 16 6 6.8542 1.2660 -6.2270 17 1 6.6398 2.3239 -6.2620 18 6 6.8701 0.5219 -7.3987 19 7 6.9157 -0.7923 -7.3432 20 14 6.8270 1.3857 -9.0545 21 1 8.0088 2.2765 -9.1789 22 1 6.8534 0.3743 -10.1413 23 1 5.5852 2.1933 -9.1591 24 6 5.6708 0.2370 -3.0926 25 6 1.6309 2.1281 1.3052 26 6 2.3133 1.4302 2.4834 27 6 2.0580 3.5967 1.2655 28 1 -0.3633 -1.0270 0.0396 29 1 -0.3633 0.5476 0.8695 30 1 -0.3633 0.4790 -0.9091 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9932 0.8321 0.6729 34 1 3.9355 2.4656 -0.0317 35 1 5.8488 1.7105 0.0052 36 1 6.8907 0.3657 -0.5226 37 1 6.6690 3.1205 -1.8212 38 1 8.0639 2.4796 -0.9190 39 1 8.3052 0.6684 -2.6076 40 1 8.4354 2.2775 -3.3567 41 1 7.2303 -1.4352 -5.0092 42 1 8.5679 -0.6089 -5.8437 43 1 8.4865 -0.5988 -4.0656 44 1 6.9272 -1.3123 -8.1619 45 1 6.2005 -0.7041 -2.9447 46 1 4.7872 0.0686 -3.7083 47 1 0.5491 2.0674 1.4241 48 1 3.3951 1.4909 2.3646 49 1 2.0223 1.9188 3.4133 50 1 2.0091 0.3839 2.5117 51 1 1.5591 4.0979 0.4361 52 1 1.7813 4.0811 2.2020 53 1 3.1378 3.6576 1.1302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752996304.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:23 Heat of formation + Delta-G solvation = -38.137437 kcal Electronic energy + Delta-G solvation = -27694.879735 eV Core-core repulsion = 24180.316618 eV Total energy + Delta-G solvation = -3514.563116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.19260 -38.30132 -36.94576 -35.04642 -32.46218 -32.29923 -31.27733 -30.33195 -28.54956 -27.39287 -25.98563 -25.56433 -24.27728 -23.23402 -22.32940 -21.64073 -19.81070 -18.78188 -18.28321 -17.15335 -16.69619 -15.77561 -15.39390 -15.11394 -14.84173 -14.58692 -14.11518 -14.04286 -13.79366 -13.67531 -13.52032 -13.14672 -12.99736 -12.87078 -12.62639 -12.45675 -12.28940 -12.10708 -11.87413 -11.76882 -11.47392 -11.38395 -11.14584 -11.08656 -10.98965 -10.77184 -10.63290 -10.45286 -10.36141 -10.34825 -10.33089 -10.22799 -10.14187 -9.85620 -9.72508 -9.27459 -8.53350 -8.22606 -6.70901 -5.72474 -3.18216 2.94726 3.31044 3.41761 3.46061 3.47284 4.50460 4.54239 4.62591 4.67884 4.91361 4.96849 5.07922 5.12541 5.17608 5.27448 5.33339 5.40093 5.41287 5.45625 5.47455 5.55572 5.57682 5.60857 5.66457 5.70214 5.72693 5.80392 5.90354 5.91498 5.95451 5.97521 6.04297 6.10151 6.16442 6.16792 6.25689 6.27336 6.41801 6.43784 6.51114 6.57088 6.75973 6.83000 6.97842 7.04156 7.39886 7.70706 7.78553 7.82671 8.43140 8.54369 9.25583 9.87688 10.37381 11.33853 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.018330 B = 0.003310 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.159608 B = 8457.111463 C = 9076.607326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C -0.066 4.066 4 H 0.078 0.922 5 C -0.138 4.138 6 C 0.508 3.492 7 O -0.538 6.538 8 N -0.609 5.609 9 C 0.108 3.892 10 C -0.131 4.131 11 C -0.133 4.133 12 C 0.169 3.831 13 H 0.063 0.937 14 N -0.591 5.591 15 C 0.162 3.838 16 C -0.257 4.257 17 H 0.067 0.933 18 C 0.004 3.996 19 N -0.906 5.906 20 Si 0.906 3.094 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.099 3.901 25 C -0.094 4.094 26 C -0.152 4.152 27 C -0.151 4.151 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.018 0.982 42 H 0.056 0.944 43 H -0.004 1.004 44 H 0.254 0.746 45 H 0.058 0.942 46 H 0.090 0.910 47 H 0.074 0.926 48 H 0.056 0.944 49 H 0.050 0.950 50 H 0.058 0.942 51 H 0.054 0.946 52 H 0.052 0.948 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.363 5.138 21.215 22.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C -0.084 4.084 4 H 0.096 0.904 5 C -0.178 4.178 6 C 0.296 3.704 7 O -0.416 6.416 8 N -0.343 5.343 9 C -0.015 4.015 10 C -0.170 4.170 11 C -0.173 4.173 12 C 0.059 3.941 13 H 0.081 0.919 14 N -0.313 5.313 15 C 0.017 3.983 16 C -0.387 4.387 17 H 0.085 0.915 18 C -0.194 4.194 19 N -0.551 5.551 20 Si 0.736 3.264 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.209 1.209 24 C -0.025 4.025 25 C -0.113 4.113 26 C -0.209 4.209 27 C -0.208 4.208 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.036 0.964 42 H 0.075 0.925 43 H 0.014 0.986 44 H 0.064 0.936 45 H 0.077 0.923 46 H 0.109 0.891 47 H 0.092 0.908 48 H 0.075 0.925 49 H 0.069 0.931 50 H 0.077 0.923 51 H 0.073 0.927 52 H 0.071 0.929 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.794 4.789 20.607 21.935 hybrid contribution 0.113 0.331 -0.918 0.982 sum -5.681 5.120 19.689 21.122 Atomic orbital electron populations 1.21770 0.96298 1.01109 1.01427 1.21739 0.95732 0.96251 1.02784 1.20957 0.93082 0.97026 0.97384 0.90385 1.21877 0.98057 1.02415 0.95438 1.20682 0.82109 0.78677 0.88943 1.90672 1.49258 1.49323 1.52298 1.48333 1.05281 1.62590 1.18102 1.21695 0.89982 0.97943 0.91873 1.21908 0.98776 0.98470 0.97829 1.22071 0.99812 1.00396 0.94987 1.20621 0.91630 0.95155 0.86655 0.91881 1.43906 1.58496 1.27767 1.01086 1.20772 0.93584 0.87681 0.96269 1.19180 1.43857 0.91873 0.83745 0.91541 1.25063 1.00738 0.95300 0.98322 1.70044 1.54508 1.03812 1.26738 0.86316 0.78063 0.78450 0.83587 1.21058 1.21607 1.20880 1.22465 1.00549 0.97318 0.82181 1.21200 1.00506 0.94808 0.94769 1.21955 1.00780 1.00663 0.97464 1.21917 1.01576 0.95843 1.01476 0.93236 0.93093 0.92754 0.89854 0.92633 0.89174 0.89039 0.90450 0.91707 0.91818 0.91328 0.92312 0.91800 0.96411 0.92515 0.98601 0.93631 0.92327 0.89131 0.90782 0.92504 0.93085 0.92350 0.92652 0.92930 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.72 37.16 0.36 -1.19 16 2 C -0.13 -1.49 5.03 -26.73 -0.13 -1.63 16 3 C -0.07 -0.72 1.30 -90.62 -0.12 -0.83 16 4 H 0.08 1.01 7.96 -51.93 -0.41 0.60 16 5 C -0.14 -1.51 2.75 -27.88 -0.08 -1.59 16 6 C 0.51 8.00 7.38 -10.98 -0.08 7.92 16 7 O -0.54 -10.67 13.40 5.56 0.07 -10.60 16 8 N -0.61 -9.55 2.97 -172.79 -0.51 -10.06 16 9 C 0.11 1.27 6.34 -3.71 -0.02 1.24 16 10 C -0.13 -1.62 6.09 -26.59 -0.16 -1.78 16 11 C -0.13 -2.20 5.10 -26.67 -0.14 -2.33 16 12 C 0.17 3.48 2.75 -67.83 -0.19 3.29 16 13 H 0.06 1.39 7.87 -51.93 -0.41 0.98 16 14 N -0.59 -14.84 2.81 -173.37 -0.49 -15.33 16 15 C 0.16 3.96 7.98 59.85 0.48 4.44 16 16 C -0.26 -7.15 9.57 -15.06 -0.14 -7.30 16 17 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 18 C 0.00 0.12 5.08 -17.43 -0.09 0.03 16 19 N -0.91 -26.71 10.74 55.49 0.60 -26.12 16 20 Si 0.91 22.18 29.57 -169.99 -5.03 17.16 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 C 0.10 1.95 5.79 -3.73 -0.02 1.93 16 25 C -0.09 -0.80 2.55 -90.63 -0.23 -1.03 16 26 C -0.15 -1.12 8.48 37.16 0.32 -0.81 16 27 C -0.15 -1.18 8.95 37.16 0.33 -0.85 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.45 6.38 -51.93 -0.33 0.12 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.25 5.88 -51.93 -0.31 0.95 16 32 H 0.06 0.58 6.31 -51.93 -0.33 0.25 16 33 H 0.09 0.84 6.46 -51.93 -0.34 0.50 16 34 H 0.09 0.87 5.83 -51.93 -0.30 0.57 16 35 H 0.08 0.68 5.93 -51.93 -0.31 0.37 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 39 H 0.06 0.97 6.74 -51.93 -0.35 0.62 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.02 0.47 7.79 -51.93 -0.40 0.06 16 42 H 0.06 1.51 6.80 -51.93 -0.35 1.16 16 43 H 0.00 -0.09 6.46 -51.93 -0.34 -0.43 16 44 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.06 1.18 7.51 -51.93 -0.39 0.79 16 46 H 0.09 2.13 7.01 -51.93 -0.36 1.77 16 47 H 0.07 0.62 6.34 -51.93 -0.33 0.29 16 48 H 0.06 0.40 6.48 -51.93 -0.34 0.06 16 49 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 50 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 51 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 52 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 53 H 0.06 0.43 6.38 -51.93 -0.33 0.10 16 LS Contribution 385.64 15.07 5.81 5.81 Total: -1.00 -31.22 385.64 -9.07 -40.29 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -9.61 Total: -0.68 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 0.08 Total: -0.47 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.41 Total: -51.50 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.07 Total: -10.60 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.22 -9.07 -40.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752996304.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.154 kcal (2) G-P(sol) polarization free energy of solvation -31.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds