Wall clock time and date at job start Tue Mar 31 2020 10:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46510 * 2 1 4 4 H 1.09001 * 109.47407 * 304.80297 * 3 2 1 5 5 C 1.53001 * 109.46715 * 184.80462 * 3 2 1 6 6 C 1.50697 * 109.47138 * 65.00304 * 5 3 2 7 7 O 1.21282 * 120.00451 * 359.97438 * 6 5 3 8 8 N 1.34782 * 119.99941 * 179.97438 * 6 5 3 9 9 C 1.46926 * 120.63030 * 359.97438 * 8 6 5 10 10 C 1.53187 * 108.89088 * 233.51759 * 9 8 6 11 11 C 1.53079 * 109.29489 * 305.57397 * 10 9 8 12 12 C 1.53038 * 109.65392 * 61.16051 * 11 10 9 13 13 H 1.08999 * 109.50362 * 58.64825 * 12 11 10 14 14 N 1.46501 * 109.52464 * 178.73343 * 12 11 10 15 15 C 1.46500 * 120.00139 * 59.84612 * 14 12 11 16 16 C 1.36941 * 120.00129 * 239.85651 * 14 12 11 17 17 H 1.07999 * 119.99641 * 24.44344 * 16 14 12 18 18 C 1.38807 * 119.99985 * 204.45461 * 16 14 12 19 19 N 1.31618 * 120.00298 * 10.94106 * 18 16 14 20 20 Si 1.86804 * 120.00114 * 190.94918 * 18 16 14 21 21 H 1.48507 * 109.46997 * 59.99317 * 20 18 16 22 22 H 1.48492 * 109.47212 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46573 * 299.99727 * 20 18 16 24 24 C 1.46924 * 120.62867 * 179.97438 * 8 6 5 25 25 C 1.52993 * 109.47375 * 64.80584 * 3 2 1 26 26 C 1.52997 * 109.47550 * 63.79050 * 25 3 2 27 27 C 1.52997 * 109.47348 * 183.79139 * 25 3 2 28 28 H 1.09007 * 109.46720 * 182.20742 * 1 2 3 29 29 H 1.08992 * 109.47352 * 302.20249 * 1 2 3 30 30 H 1.08996 * 109.47064 * 62.21417 * 1 2 3 31 31 H 1.09000 * 109.46942 * 240.00406 * 2 1 3 32 32 H 1.08996 * 109.47216 * 119.99612 * 2 1 3 33 33 H 1.08997 * 109.47316 * 304.99869 * 5 3 2 34 34 H 1.09006 * 109.46996 * 184.99752 * 5 3 2 35 35 H 1.08999 * 109.58562 * 353.37612 * 9 8 6 36 36 H 1.09001 * 109.58652 * 113.65537 * 9 8 6 37 37 H 1.08994 * 109.50233 * 65.38859 * 10 9 8 38 38 H 1.09009 * 109.49893 * 185.48914 * 10 9 8 39 39 H 1.08996 * 109.34647 * 301.13028 * 11 10 9 40 40 H 1.09001 * 109.45148 * 181.24682 * 11 10 9 41 41 H 1.09000 * 109.47046 * 86.63844 * 15 14 12 42 42 H 1.09004 * 109.47425 * 206.63743 * 15 14 12 43 43 H 1.09000 * 109.47441 * 326.64176 * 15 14 12 44 44 H 0.97000 * 120.00713 * 180.02562 * 19 18 16 45 45 H 1.09001 * 109.58930 * 246.19608 * 24 8 6 46 46 H 1.09000 * 109.58936 * 6.62771 * 24 8 6 47 47 H 1.09000 * 109.47335 * 303.79260 * 25 3 2 48 48 H 1.09003 * 109.47107 * 59.99614 * 26 25 3 49 49 H 1.08994 * 109.47907 * 179.97438 * 26 25 3 50 50 H 1.09003 * 109.47118 * 300.00348 * 26 25 3 51 51 H 1.09001 * 109.47204 * 60.92699 * 27 25 3 52 52 H 1.09000 * 109.47847 * 180.92558 * 27 25 3 53 53 H 1.08999 * 109.47240 * 300.92793 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6080 1.9806 -0.8438 5 6 3.5651 1.4443 -0.1208 6 6 3.9636 0.8807 -1.4604 7 8 3.1116 0.5132 -2.2415 8 7 5.2668 0.7849 -1.7906 9 6 6.3104 1.2263 -0.8553 10 6 7.2302 2.2201 -1.5715 11 6 7.7630 1.5806 -2.8563 12 6 6.5951 1.2425 -3.7857 13 1 6.0378 2.1508 -4.0149 14 7 7.1102 0.6586 -5.0267 15 6 7.8992 -0.5750 -4.9835 16 6 6.8542 1.2660 -6.2270 17 1 6.6398 2.3239 -6.2620 18 6 6.8701 0.5219 -7.3987 19 7 6.9157 -0.7923 -7.3432 20 14 6.8270 1.3857 -9.0545 21 1 8.0088 2.2765 -9.1789 22 1 6.8534 0.3743 -10.1413 23 1 5.5852 2.1933 -9.1591 24 6 5.6708 0.2370 -3.0926 25 6 1.6309 2.1281 1.3052 26 6 2.3133 1.4302 2.4834 27 6 2.0580 3.5967 1.2655 28 1 -0.3633 -1.0270 0.0396 29 1 -0.3633 0.5476 0.8695 30 1 -0.3633 0.4790 -0.9091 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9932 0.8321 0.6729 34 1 3.9355 2.4656 -0.0317 35 1 5.8488 1.7105 0.0052 36 1 6.8907 0.3657 -0.5226 37 1 6.6690 3.1205 -1.8212 38 1 8.0639 2.4796 -0.9190 39 1 8.3052 0.6684 -2.6076 40 1 8.4354 2.2775 -3.3567 41 1 7.2303 -1.4352 -5.0092 42 1 8.5679 -0.6089 -5.8437 43 1 8.4865 -0.5988 -4.0656 44 1 6.9272 -1.3123 -8.1619 45 1 6.2005 -0.7041 -2.9447 46 1 4.7872 0.0686 -3.7083 47 1 0.5491 2.0674 1.4241 48 1 3.3951 1.4909 2.3646 49 1 2.0223 1.9188 3.4133 50 1 2.0091 0.3839 2.5117 51 1 1.5591 4.0979 0.4361 52 1 1.7813 4.0811 2.2020 53 1 3.1378 3.6576 1.1302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752996304.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:22 Heat of formation + Delta-G solvation = -55.519702 kcal Electronic energy + Delta-G solvation = -27695.633486 eV Core-core repulsion = 24180.316618 eV Total energy + Delta-G solvation = -3515.316868 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.40642 -39.45358 -38.19362 -36.74686 -34.01505 -33.19089 -32.78367 -31.55476 -30.03577 -28.06773 -27.94695 -26.70453 -25.57619 -24.75978 -23.14671 -23.02673 -21.21373 -20.03094 -19.27170 -18.80174 -18.25024 -17.07134 -16.92367 -16.42468 -15.95254 -15.80141 -15.44026 -15.29602 -15.20625 -14.83726 -14.48210 -14.36830 -14.25292 -14.12475 -13.79678 -13.64226 -13.55483 -13.42177 -12.97273 -12.88607 -12.80888 -12.50461 -12.48978 -12.31680 -12.21725 -12.14386 -12.09105 -12.07458 -11.83915 -11.72696 -11.62308 -11.39557 -11.30504 -11.16173 -11.01580 -10.64142 -10.53470 -9.61657 -8.75112 -7.88321 -5.36482 1.42810 1.45277 1.52010 1.72327 2.07138 2.48667 3.27021 3.57580 3.62668 3.81721 3.89208 3.99045 4.06965 4.15165 4.16572 4.30375 4.36535 4.38827 4.39293 4.47733 4.58958 4.60357 4.63555 4.70270 4.80664 4.83900 4.86578 4.92107 4.93173 4.95478 4.97267 5.06836 5.12044 5.16189 5.17038 5.21870 5.24493 5.24889 5.37301 5.42155 5.42421 5.52911 5.54864 5.56997 5.59588 5.63458 5.67276 5.71129 6.31314 6.56878 7.11905 7.30279 7.83544 8.27084 9.16027 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.018330 B = 0.003310 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.159608 B = 8457.111463 C = 9076.607326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C -0.064 4.064 4 H 0.048 0.952 5 C -0.125 4.125 6 C 0.498 3.502 7 O -0.590 6.590 8 N -0.610 5.610 9 C 0.102 3.898 10 C -0.122 4.122 11 C -0.123 4.123 12 C 0.167 3.833 13 H 0.041 0.959 14 N -0.609 5.609 15 C 0.180 3.820 16 C -0.269 4.269 17 H 0.066 0.934 18 C -0.051 4.051 19 N -0.938 5.938 20 Si 0.970 3.030 21 H -0.273 1.273 22 H -0.292 1.292 23 H -0.280 1.280 24 C 0.115 3.885 25 C -0.087 4.087 26 C -0.151 4.151 27 C -0.151 4.151 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.036 0.964 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.109 0.891 39 H 0.062 0.938 40 H 0.055 0.945 41 H -0.011 1.011 42 H 0.029 0.971 43 H 0.032 0.968 44 H 0.249 0.751 45 H 0.053 0.947 46 H 0.039 0.961 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.062 0.938 50 H 0.055 0.945 51 H 0.043 0.957 52 H 0.065 0.935 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.429 6.963 24.931 26.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.164 4.164 3 C -0.083 4.083 4 H 0.066 0.934 5 C -0.165 4.165 6 C 0.289 3.711 7 O -0.471 6.471 8 N -0.343 5.343 9 C -0.019 4.019 10 C -0.161 4.161 11 C -0.162 4.162 12 C 0.059 3.941 13 H 0.059 0.941 14 N -0.332 5.332 15 C 0.035 3.965 16 C -0.400 4.400 17 H 0.083 0.917 18 C -0.246 4.246 19 N -0.584 5.584 20 Si 0.798 3.202 21 H -0.198 1.198 22 H -0.218 1.218 23 H -0.206 1.206 24 C -0.010 4.010 25 C -0.105 4.105 26 C -0.208 4.208 27 C -0.209 4.209 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.127 0.873 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.007 0.993 42 H 0.048 0.952 43 H 0.050 0.950 44 H 0.058 0.942 45 H 0.071 0.929 46 H 0.057 0.943 47 H 0.092 0.908 48 H 0.085 0.915 49 H 0.081 0.919 50 H 0.074 0.926 51 H 0.062 0.938 52 H 0.084 0.916 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.843 6.652 24.386 25.737 hybrid contribution -0.229 -0.230 -2.034 2.060 sum -5.071 6.422 22.352 23.803 Atomic orbital electron populations 1.21753 0.95648 1.01473 1.01509 1.21689 0.96424 0.96729 1.01568 1.20920 0.93061 0.96307 0.97979 0.93365 1.21931 0.98108 1.03814 0.92602 1.21682 0.81413 0.77718 0.90298 1.90664 1.50742 1.51388 1.54287 1.48406 1.06599 1.62293 1.16999 1.22091 0.89148 0.98769 0.91871 1.21898 1.00139 0.98000 0.96044 1.21912 0.97530 1.00745 0.96025 1.20775 0.93350 0.93900 0.86044 0.94054 1.44141 1.59198 1.27853 1.01961 1.20478 0.92670 0.86652 0.96704 1.19509 1.43084 0.92118 0.85246 0.91669 1.25846 1.01072 0.95973 1.01721 1.70215 1.55953 1.05089 1.27125 0.85299 0.78289 0.77365 0.79233 1.19845 1.21805 1.20599 1.21859 0.97962 0.97091 0.84109 1.21132 1.00708 0.95146 0.93552 1.21959 1.01250 1.00405 0.97172 1.21928 1.01970 0.95158 1.01799 0.92944 0.90995 0.94457 0.93901 0.90814 0.86201 0.86512 0.86202 0.90082 0.91931 0.87262 0.91951 0.92618 0.99308 0.95217 0.94978 0.94166 0.92879 0.94252 0.90845 0.91454 0.91857 0.92604 0.93776 0.91553 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.72 71.98 0.70 -2.35 16 2 C -0.13 -2.92 5.03 30.60 0.15 -2.77 16 3 C -0.06 -1.31 1.30 -10.80 -0.01 -1.33 16 4 H 0.05 1.28 7.96 -2.39 -0.02 1.26 16 5 C -0.13 -2.40 2.75 29.85 0.08 -2.32 16 6 C 0.50 15.60 7.38 87.66 0.65 16.25 16 7 O -0.59 -24.87 13.40 -3.04 -0.04 -24.91 16 8 N -0.61 -18.55 2.97 -818.98 -2.44 -20.99 16 9 C 0.10 1.96 6.34 86.36 0.55 2.51 16 10 C -0.12 -2.52 6.09 30.68 0.19 -2.33 16 11 C -0.12 -3.83 5.10 30.63 0.16 -3.68 16 12 C 0.17 7.04 2.75 45.06 0.12 7.16 16 13 H 0.04 1.89 7.87 -2.39 -0.02 1.87 16 14 N -0.61 -31.63 2.81 -702.41 -1.98 -33.60 16 15 C 0.18 9.10 7.98 127.77 1.02 10.12 16 16 C -0.27 -15.50 9.57 84.03 0.80 -14.70 16 17 H 0.07 3.68 7.83 -2.91 -0.02 3.65 16 18 C -0.05 -2.96 5.08 84.86 0.43 -2.53 16 19 N -0.94 -57.57 10.74 21.65 0.23 -57.34 16 20 Si 0.97 46.79 29.57 68.60 2.03 48.82 16 21 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 22 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 23 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 24 C 0.12 4.73 5.79 86.35 0.50 5.23 16 25 C -0.09 -1.22 2.55 -10.80 -0.03 -1.25 16 26 C -0.15 -1.59 8.48 71.98 0.61 -0.98 16 27 C -0.15 -1.88 8.95 71.98 0.64 -1.24 16 28 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.07 1.18 6.38 -2.39 -0.02 1.16 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.04 1.35 5.88 -2.39 -0.01 1.34 16 32 H 0.07 1.40 6.31 -2.39 -0.02 1.39 16 33 H 0.12 1.65 6.46 -2.39 -0.02 1.63 16 34 H 0.12 1.70 5.83 -2.38 -0.01 1.69 16 35 H 0.12 1.35 5.93 -2.39 -0.01 1.34 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.06 1.91 6.74 -2.39 -0.02 1.89 16 40 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 41 H -0.01 -0.64 7.79 -2.39 -0.02 -0.66 16 42 H 0.03 1.63 6.80 -2.38 -0.02 1.61 16 43 H 0.03 1.36 6.46 -2.39 -0.02 1.34 16 44 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 45 H 0.05 2.20 7.51 -2.39 -0.02 2.19 16 46 H 0.04 2.00 7.01 -2.39 -0.02 1.98 16 47 H 0.07 1.05 6.34 -2.39 -0.02 1.04 16 48 H 0.07 0.58 6.48 -2.39 -0.02 0.56 16 49 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.05 0.63 6.43 -2.39 -0.02 0.62 16 51 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 52 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 53 H 0.06 0.70 6.38 -2.39 -0.02 0.68 16 Total: -1.00 -74.86 385.64 5.24 -69.62 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.86 Total: 12.61 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 6.56 Total: 5.79 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -4.18 Total: -111.93 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.04 Total: -24.91 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -74.86 5.24 -69.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752996304.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.100 kcal (2) G-P(sol) polarization free energy of solvation -74.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds