Wall clock time and date at job start Tue Mar 31 2020 10:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46731 * 2 1 4 4 C 1.52995 * 109.46694 * 240.00308 * 2 1 3 5 5 C 1.53001 * 109.47048 * 174.54577 * 4 2 1 6 6 C 1.53005 * 109.47217 * 59.62986 * 5 4 2 7 7 C 1.53000 * 109.47632 * 179.62943 * 5 4 2 8 8 C 1.52996 * 109.47065 * 299.63036 * 5 4 2 9 9 N 1.46500 * 109.47476 * 119.99957 * 2 1 3 10 10 C 1.34777 * 120.00152 * 275.00248 * 9 2 1 11 11 O 1.21587 * 119.99959 * 4.80401 * 10 9 2 12 12 N 1.34773 * 119.99783 * 184.53228 * 10 9 2 13 13 C 1.46929 * 120.62524 * 175.28041 * 12 10 9 14 14 C 1.53629 * 108.54248 * 126.36938 * 13 12 10 15 15 C 1.53036 * 109.24496 * 54.84989 * 14 13 12 16 16 C 1.52998 * 109.46483 * 178.49379 * 15 14 13 17 17 C 1.50700 * 109.47008 * 295.07136 * 16 15 14 18 18 H 1.08009 * 119.99731 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00267 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99837 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00187 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47260 * 59.99846 * 21 19 17 23 23 H 1.48497 * 109.47388 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47025 * 299.99900 * 21 19 17 25 25 C 1.53048 * 109.54126 * 298.51525 * 15 14 13 26 26 C 1.46923 * 120.63451 * 355.55293 * 12 10 9 27 27 H 1.09000 * 109.46703 * 299.99997 * 1 2 3 28 28 H 1.08992 * 109.47172 * 59.99871 * 1 2 3 29 29 H 1.09001 * 109.47165 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47140 * 294.54206 * 4 2 1 31 31 H 1.08998 * 109.48054 * 54.54593 * 4 2 1 32 32 H 1.09005 * 109.46938 * 53.11560 * 6 5 4 33 33 H 1.09001 * 109.47306 * 173.11897 * 6 5 4 34 34 H 1.09000 * 109.47080 * 293.12274 * 6 5 4 35 35 H 1.09000 * 109.47034 * 59.99228 * 7 5 4 36 36 H 1.08994 * 109.47759 * 180.02562 * 7 5 4 37 37 H 1.09004 * 109.46889 * 300.00311 * 7 5 4 38 38 H 1.09000 * 109.47433 * 60.00348 * 8 5 4 39 39 H 1.09005 * 109.47106 * 179.97438 * 8 5 4 40 40 H 1.08994 * 109.47094 * 299.99810 * 8 5 4 41 41 H 0.96996 * 119.99773 * 94.99793 * 9 2 1 42 42 H 1.08993 * 109.58452 * 246.19632 * 13 12 10 43 43 H 1.08997 * 109.58823 * 6.62439 * 13 12 10 44 44 H 1.09005 * 109.62718 * 294.86329 * 14 13 12 45 45 H 1.08997 * 109.45733 * 174.73898 * 14 13 12 46 46 H 1.09003 * 109.44535 * 58.52381 * 15 14 13 47 47 H 1.09004 * 109.46696 * 55.06631 * 16 15 14 48 48 H 1.08994 * 109.47281 * 175.06890 * 16 15 14 49 49 H 0.96999 * 119.99701 * 180.02562 * 20 19 17 50 50 H 1.08997 * 109.49337 * 301.41301 * 25 15 14 51 51 H 1.08997 * 109.52709 * 181.32960 * 25 15 14 52 52 H 1.09007 * 109.58586 * 353.38358 * 26 12 10 53 53 H 1.09004 * 109.58282 * 113.65662 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5638 -0.6036 -1.3198 6 6 4.1823 -1.2332 -0.0700 7 6 4.0747 -1.3326 -2.5641 8 6 3.9584 0.8727 -1.3957 9 7 2.0185 -0.6906 1.1961 10 6 2.1472 -0.0183 2.3571 11 8 1.7764 1.1371 2.4349 12 7 2.6820 -0.6283 3.4333 13 6 2.9240 0.1198 4.6745 14 6 2.2431 -0.6236 5.8338 15 6 2.7396 -2.0709 5.8657 16 6 2.0930 -2.8059 7.0415 17 6 2.5620 -2.1932 8.3360 18 1 3.2526 -1.3629 8.3214 19 6 2.1096 -2.6926 9.5388 20 7 1.2684 -3.7033 9.5565 21 14 2.6904 -1.9327 11.1434 22 1 2.3028 -0.4997 11.1813 23 1 2.0621 -2.6453 12.2846 24 1 4.1677 -2.0486 11.2397 25 6 2.3625 -2.7704 4.5577 26 6 3.0395 -2.0526 3.3859 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.7586 -1.7732 -1.2018 31 1 1.5991 -0.2669 -2.1366 32 1 3.8039 -2.2483 0.0507 33 1 5.2669 -1.2598 -0.1753 34 1 3.9166 -0.6401 0.8051 35 1 3.6340 -0.8842 -3.4545 36 1 5.1603 -1.2492 -2.6141 37 1 3.7935 -2.3844 -2.5101 38 1 3.5946 1.3921 -0.5092 39 1 5.0441 0.9565 -1.4455 40 1 3.5178 1.3212 -2.2860 41 1 2.2492 -1.6317 1.1526 42 1 3.9963 0.1853 4.8585 43 1 2.5047 1.1219 4.5848 44 1 1.1625 -0.6128 5.6913 45 1 2.4910 -0.1331 6.7751 46 1 3.8232 -2.0803 5.9831 47 1 1.0086 -2.7207 6.9711 48 1 2.3775 -3.8577 7.0132 49 1 0.9498 -4.0544 10.4027 50 1 1.2808 -2.7393 4.4273 51 1 2.6954 -3.8078 4.5902 52 1 2.6965 -2.4843 2.4455 53 1 4.1213 -2.1605 3.4643 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574568607.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:52 Heat of formation + Delta-G solvation = -53.341371 kcal Electronic energy + Delta-G solvation = -27560.103328 eV Core-core repulsion = 24044.880919 eV Total energy + Delta-G solvation = -3515.222408 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.63075 -38.67254 -37.19529 -34.68528 -34.02238 -32.24861 -31.30243 -30.26251 -27.90531 -27.57627 -27.35088 -26.81192 -24.62395 -22.98192 -22.18643 -21.28285 -19.98227 -19.50204 -18.91579 -17.65600 -16.49873 -16.20351 -15.67947 -15.02711 -14.93669 -14.63800 -14.48565 -14.20008 -14.04228 -13.58702 -13.26825 -13.19890 -12.98665 -12.84188 -12.78848 -12.65154 -12.43554 -12.10641 -11.93006 -11.92313 -11.85792 -11.73430 -11.48086 -11.17365 -11.00760 -10.92591 -10.75455 -10.74078 -10.66194 -10.52521 -10.40276 -10.15769 -9.86363 -9.61258 -9.24374 -8.97541 -8.86406 -8.34171 -8.17287 -5.99039 -4.00775 2.80698 3.33688 3.36980 3.38412 3.40646 3.97000 4.35420 4.46447 4.50452 4.55590 4.97882 5.02520 5.07887 5.11773 5.32358 5.33848 5.35886 5.37356 5.38867 5.40944 5.49882 5.52832 5.57288 5.62076 5.64258 5.67912 5.70488 5.77341 5.83838 5.84702 5.87244 5.99678 6.01802 6.12475 6.14285 6.17073 6.21813 6.35963 6.41761 6.53423 6.60188 6.68403 7.00556 7.04382 7.12586 7.18094 7.66849 7.81998 8.00633 8.08784 8.43439 8.76138 9.05473 9.63037 11.12279 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.027313 B = 0.002749 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.899480 B =10181.353616 C =10324.417354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.158 3.842 3 H 0.090 0.910 4 C -0.117 4.117 5 C -0.067 4.067 6 C -0.158 4.158 7 C -0.141 4.141 8 C -0.145 4.145 9 N -0.742 5.742 10 C 0.705 3.295 11 O -0.596 6.596 12 N -0.623 5.623 13 C 0.126 3.874 14 C -0.118 4.118 15 C -0.079 4.079 16 C 0.028 3.972 17 C -0.516 4.516 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.889 3.111 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.130 4.130 26 C 0.114 3.886 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.396 0.604 42 H 0.060 0.940 43 H 0.086 0.914 44 H 0.057 0.943 45 H 0.083 0.917 46 H 0.058 0.942 47 H 0.015 0.985 48 H 0.015 0.985 49 H 0.260 0.740 50 H 0.061 0.939 51 H 0.069 0.931 52 H 0.064 0.936 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.051 3.927 -24.386 25.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.053 3.947 3 H 0.108 0.892 4 C -0.155 4.155 5 C -0.068 4.068 6 C -0.216 4.216 7 C -0.198 4.198 8 C -0.202 4.202 9 N -0.401 5.401 10 C 0.407 3.593 11 O -0.475 6.475 12 N -0.360 5.360 13 C 0.004 3.996 14 C -0.156 4.156 15 C -0.098 4.098 16 C -0.009 4.009 17 C -0.554 4.554 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.717 3.283 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.168 4.168 26 C -0.009 4.009 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.234 0.766 42 H 0.078 0.922 43 H 0.104 0.896 44 H 0.076 0.924 45 H 0.101 0.899 46 H 0.076 0.924 47 H 0.033 0.967 48 H 0.033 0.967 49 H 0.070 0.930 50 H 0.079 0.921 51 H 0.088 0.912 52 H 0.083 0.917 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.692 4.667 -24.211 24.931 hybrid contribution 0.324 -0.333 0.966 1.072 sum 4.016 4.334 -23.245 23.984 Atomic orbital electron populations 1.22216 0.95734 1.01945 1.02507 1.20851 0.93490 0.97487 0.82908 0.89173 1.21985 0.95077 1.01049 0.97405 1.20514 0.94651 0.95911 0.95675 1.22386 1.00132 1.00392 0.98656 1.21879 1.00919 1.00044 0.96970 1.21943 1.01167 0.95135 1.01949 1.45759 1.71673 1.13761 1.08935 1.15845 0.78522 0.84675 0.80244 1.90879 1.56048 1.16842 1.83752 1.47356 1.65619 1.10455 1.12527 1.21739 0.99670 0.95998 0.82219 1.21976 0.99928 0.96512 0.97175 1.21171 0.99873 0.94312 0.94433 1.19113 0.95753 0.95033 0.90962 1.21208 1.26849 1.16384 0.90984 0.92622 1.25015 0.95192 0.95081 0.99173 1.69952 1.32373 1.25073 1.26205 0.86703 0.78917 0.79416 0.83236 1.20243 1.21390 1.20297 1.22027 1.00513 0.99170 0.95097 1.21674 0.99732 0.80656 0.98854 0.91717 0.92039 0.92739 0.91434 0.90404 0.93157 0.93258 0.90258 0.92822 0.92726 0.92755 0.92034 0.92849 0.92795 0.76592 0.92177 0.89602 0.92390 0.89896 0.92389 0.96693 0.96700 0.93019 0.92056 0.91216 0.91738 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 9.48 37.16 0.35 -1.28 16 2 C 0.16 1.55 2.26 -67.93 -0.15 1.40 16 3 H 0.09 1.04 5.67 -51.93 -0.29 0.75 16 4 C -0.12 -0.85 3.98 -26.73 -0.11 -0.95 16 5 C -0.07 -0.50 0.80 -154.51 -0.12 -0.63 16 6 C -0.16 -1.31 6.93 37.16 0.26 -1.06 16 7 C -0.14 -0.91 8.47 37.16 0.31 -0.59 16 8 C -0.14 -1.17 8.14 37.16 0.30 -0.87 16 9 N -0.74 -8.25 2.61 -58.68 -0.15 -8.41 16 10 C 0.71 10.59 7.54 -86.92 -0.66 9.94 16 11 O -0.60 -11.08 15.44 5.29 0.08 -11.00 16 12 N -0.62 -9.11 2.97 -178.23 -0.53 -9.64 16 13 C 0.13 2.01 6.47 -3.48 -0.02 1.99 16 14 C -0.12 -2.17 5.21 -26.39 -0.14 -2.31 16 15 C -0.08 -1.52 2.10 -90.58 -0.19 -1.71 16 16 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 17 C -0.52 -14.09 8.39 -34.44 -0.29 -14.38 16 18 H 0.06 1.47 7.06 -52.48 -0.37 1.10 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 21 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 25 C -0.13 -2.02 5.36 -26.61 -0.14 -2.17 16 26 C 0.11 1.44 6.39 -3.71 -0.02 1.41 16 27 H 0.06 0.82 8.11 -51.93 -0.42 0.40 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.37 7.49 -51.93 -0.39 -0.02 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.81 5.08 -51.93 -0.26 0.54 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.60 6.32 -51.93 -0.33 0.27 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.40 3.74 4.32 -40.82 -0.18 3.56 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.09 1.44 6.99 -51.93 -0.36 1.08 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.08 1.63 6.91 -51.93 -0.36 1.27 16 46 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 47 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 50 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 51 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 52 H 0.06 0.64 5.63 -51.93 -0.29 0.35 16 53 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 395.01 15.07 5.95 5.95 Total: -1.00 -31.22 395.01 -9.77 -40.99 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -10.00 Total: 0.74 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -0.84 Total: -9.13 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.05 Total: -44.04 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -11.00 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.22 -9.77 -40.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574568607.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.347 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds