Wall clock time and date at job start Tue Mar 31 2020 10:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46731 * 2 1 4 4 C 1.52995 * 109.46694 * 240.00308 * 2 1 3 5 5 C 1.53001 * 109.47048 * 174.54577 * 4 2 1 6 6 C 1.53005 * 109.47217 * 59.62986 * 5 4 2 7 7 C 1.53000 * 109.47632 * 179.62943 * 5 4 2 8 8 C 1.52996 * 109.47065 * 299.63036 * 5 4 2 9 9 N 1.46500 * 109.47476 * 119.99957 * 2 1 3 10 10 C 1.34777 * 120.00152 * 275.00248 * 9 2 1 11 11 O 1.21587 * 119.99959 * 4.80401 * 10 9 2 12 12 N 1.34773 * 119.99783 * 184.53228 * 10 9 2 13 13 C 1.46929 * 120.62524 * 175.28041 * 12 10 9 14 14 C 1.53629 * 108.54248 * 126.36938 * 13 12 10 15 15 C 1.53036 * 109.24496 * 54.84989 * 14 13 12 16 16 C 1.52998 * 109.46483 * 178.49379 * 15 14 13 17 17 C 1.50700 * 109.47008 * 295.07136 * 16 15 14 18 18 H 1.08009 * 119.99731 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00267 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99837 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00187 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47260 * 59.99846 * 21 19 17 23 23 H 1.48497 * 109.47388 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47025 * 299.99900 * 21 19 17 25 25 C 1.53048 * 109.54126 * 298.51525 * 15 14 13 26 26 C 1.46923 * 120.63451 * 355.55293 * 12 10 9 27 27 H 1.09000 * 109.46703 * 299.99997 * 1 2 3 28 28 H 1.08992 * 109.47172 * 59.99871 * 1 2 3 29 29 H 1.09001 * 109.47165 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47140 * 294.54206 * 4 2 1 31 31 H 1.08998 * 109.48054 * 54.54593 * 4 2 1 32 32 H 1.09005 * 109.46938 * 53.11560 * 6 5 4 33 33 H 1.09001 * 109.47306 * 173.11897 * 6 5 4 34 34 H 1.09000 * 109.47080 * 293.12274 * 6 5 4 35 35 H 1.09000 * 109.47034 * 59.99228 * 7 5 4 36 36 H 1.08994 * 109.47759 * 180.02562 * 7 5 4 37 37 H 1.09004 * 109.46889 * 300.00311 * 7 5 4 38 38 H 1.09000 * 109.47433 * 60.00348 * 8 5 4 39 39 H 1.09005 * 109.47106 * 179.97438 * 8 5 4 40 40 H 1.08994 * 109.47094 * 299.99810 * 8 5 4 41 41 H 0.96996 * 119.99773 * 94.99793 * 9 2 1 42 42 H 1.08993 * 109.58452 * 246.19632 * 13 12 10 43 43 H 1.08997 * 109.58823 * 6.62439 * 13 12 10 44 44 H 1.09005 * 109.62718 * 294.86329 * 14 13 12 45 45 H 1.08997 * 109.45733 * 174.73898 * 14 13 12 46 46 H 1.09003 * 109.44535 * 58.52381 * 15 14 13 47 47 H 1.09004 * 109.46696 * 55.06631 * 16 15 14 48 48 H 1.08994 * 109.47281 * 175.06890 * 16 15 14 49 49 H 0.96999 * 119.99701 * 180.02562 * 20 19 17 50 50 H 1.08997 * 109.49337 * 301.41301 * 25 15 14 51 51 H 1.08997 * 109.52709 * 181.32960 * 25 15 14 52 52 H 1.09007 * 109.58586 * 353.38358 * 26 12 10 53 53 H 1.09004 * 109.58282 * 113.65662 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5638 -0.6036 -1.3198 6 6 4.1823 -1.2332 -0.0700 7 6 4.0747 -1.3326 -2.5641 8 6 3.9584 0.8727 -1.3957 9 7 2.0185 -0.6906 1.1961 10 6 2.1472 -0.0183 2.3571 11 8 1.7764 1.1371 2.4349 12 7 2.6820 -0.6283 3.4333 13 6 2.9240 0.1198 4.6745 14 6 2.2431 -0.6236 5.8338 15 6 2.7396 -2.0709 5.8657 16 6 2.0930 -2.8059 7.0415 17 6 2.5620 -2.1932 8.3360 18 1 3.2526 -1.3629 8.3214 19 6 2.1096 -2.6926 9.5388 20 7 1.2684 -3.7033 9.5565 21 14 2.6904 -1.9327 11.1434 22 1 2.3028 -0.4997 11.1813 23 1 2.0621 -2.6453 12.2846 24 1 4.1677 -2.0486 11.2397 25 6 2.3625 -2.7704 4.5577 26 6 3.0395 -2.0526 3.3859 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.7586 -1.7732 -1.2018 31 1 1.5991 -0.2669 -2.1366 32 1 3.8039 -2.2483 0.0507 33 1 5.2669 -1.2598 -0.1753 34 1 3.9166 -0.6401 0.8051 35 1 3.6340 -0.8842 -3.4545 36 1 5.1603 -1.2492 -2.6141 37 1 3.7935 -2.3844 -2.5101 38 1 3.5946 1.3921 -0.5092 39 1 5.0441 0.9565 -1.4455 40 1 3.5178 1.3212 -2.2860 41 1 2.2492 -1.6317 1.1526 42 1 3.9963 0.1853 4.8585 43 1 2.5047 1.1219 4.5848 44 1 1.1625 -0.6128 5.6913 45 1 2.4910 -0.1331 6.7751 46 1 3.8232 -2.0803 5.9831 47 1 1.0086 -2.7207 6.9711 48 1 2.3775 -3.8577 7.0132 49 1 0.9498 -4.0544 10.4027 50 1 1.2808 -2.7393 4.4273 51 1 2.6954 -3.8078 4.5902 52 1 2.6965 -2.4843 2.4455 53 1 4.1213 -2.1605 3.4643 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574568607.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:52 Heat of formation + Delta-G solvation = -69.289878 kcal Electronic energy + Delta-G solvation = -27560.794907 eV Core-core repulsion = 24044.880919 eV Total energy + Delta-G solvation = -3515.913988 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.70594 -39.62118 -38.42393 -35.71329 -35.56618 -34.03514 -32.45397 -31.46139 -29.60344 -28.15414 -28.00735 -27.48264 -26.31338 -24.27511 -23.68767 -22.37875 -21.26764 -20.60397 -19.84322 -18.79194 -18.34211 -17.45451 -16.66927 -16.55103 -16.04293 -15.72572 -15.44277 -15.21543 -15.07882 -14.85040 -14.64966 -14.49136 -14.29306 -13.89735 -13.81483 -13.58855 -13.37977 -13.31360 -13.07857 -13.00168 -12.72963 -12.59182 -12.51540 -12.47402 -12.41368 -12.32808 -12.18677 -12.09152 -11.79621 -11.51497 -11.36160 -11.31561 -11.21687 -11.18409 -11.01907 -10.79500 -10.51040 -9.93392 -9.33208 -8.16548 -6.25442 1.40568 1.42827 1.50175 1.72516 2.19855 2.42538 2.97009 3.17093 3.70101 3.88846 3.92348 3.99036 4.02903 4.09230 4.23089 4.32377 4.36413 4.41022 4.43749 4.52208 4.69043 4.72286 4.74147 4.81444 4.82793 4.86586 4.88633 4.90925 4.97572 4.98979 5.02378 5.07370 5.13457 5.15563 5.17189 5.27002 5.32340 5.33813 5.34986 5.39800 5.47915 5.50196 5.56148 5.59970 5.63111 5.72318 5.82540 5.91050 6.05734 6.30703 6.91157 7.03043 7.43003 7.62490 8.95096 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.027313 B = 0.002749 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.899480 B =10181.353616 C =10324.417354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.156 3.844 3 H 0.070 0.930 4 C -0.108 4.108 5 C -0.067 4.067 6 C -0.158 4.158 7 C -0.137 4.137 8 C -0.143 4.143 9 N -0.724 5.724 10 C 0.702 3.298 11 O -0.637 6.637 12 N -0.626 5.626 13 C 0.137 3.863 14 C -0.109 4.109 15 C -0.071 4.071 16 C 0.034 3.966 17 C -0.529 4.529 18 H 0.063 0.937 19 C -0.002 4.002 20 N -0.936 5.936 21 Si 0.957 3.043 22 H -0.270 1.270 23 H -0.287 1.287 24 H -0.265 1.265 25 C -0.124 4.124 26 C 0.121 3.879 27 H 0.029 0.971 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.038 0.962 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.406 0.594 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.036 0.964 45 H 0.066 0.934 46 H 0.064 0.936 47 H -0.018 1.018 48 H -0.008 1.008 49 H 0.261 0.739 50 H 0.047 0.953 51 H 0.081 0.919 52 H 0.097 0.903 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.410 3.503 -26.437 27.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.052 3.948 3 H 0.088 0.912 4 C -0.146 4.146 5 C -0.067 4.067 6 C -0.216 4.216 7 C -0.194 4.194 8 C -0.200 4.200 9 N -0.383 5.383 10 C 0.404 3.596 11 O -0.519 6.519 12 N -0.362 5.362 13 C 0.014 3.986 14 C -0.148 4.148 15 C -0.090 4.090 16 C -0.003 4.003 17 C -0.567 4.567 18 H 0.081 0.919 19 C -0.199 4.199 20 N -0.577 5.577 21 Si 0.782 3.218 22 H -0.195 1.195 23 H -0.212 1.212 24 H -0.190 1.190 25 C -0.162 4.162 26 C -0.002 4.002 27 H 0.049 0.951 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.247 0.753 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.055 0.945 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.000 1.000 48 H 0.011 0.989 49 H 0.070 0.930 50 H 0.066 0.934 51 H 0.100 0.900 52 H 0.115 0.885 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.067 4.215 -26.299 27.113 hybrid contribution -0.133 -0.204 1.583 1.602 sum 4.934 4.011 -24.716 25.521 Atomic orbital electron populations 1.22179 0.95680 1.02358 1.01796 1.20963 0.93469 0.96957 0.83450 0.91150 1.21950 0.94829 1.01604 0.96213 1.20514 0.94759 0.95361 0.96020 1.22364 1.00261 1.00794 0.98139 1.21834 1.00834 1.00313 0.96438 1.21923 1.01075 0.95722 1.01303 1.45660 1.70577 1.14045 1.08061 1.16010 0.78222 0.84336 0.81061 1.90853 1.57704 1.18824 1.84501 1.47355 1.65610 1.11245 1.11993 1.21511 1.00181 0.95111 0.81833 1.21828 0.98808 0.96389 0.97749 1.21016 0.99535 0.94262 0.94183 1.19007 0.93992 0.94361 0.92961 1.21661 1.26563 1.16354 0.92119 0.91902 1.25927 0.95363 0.95572 1.03073 1.70090 1.33839 1.26672 1.27090 0.85615 0.78902 0.78610 0.78633 1.19504 1.21238 1.19010 1.21935 1.00069 0.99878 0.94359 1.21763 1.00656 0.78955 0.98802 0.95136 0.90068 0.91684 0.89946 0.88839 0.91758 0.93372 0.92274 0.92082 0.92904 0.92007 0.94259 0.92974 0.91845 0.75321 0.90340 0.90746 0.94530 0.91569 0.91728 0.99996 0.98942 0.93026 0.93419 0.90028 0.88473 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.48 71.98 0.68 -2.31 16 2 C 0.16 2.85 2.26 44.99 0.10 2.95 16 3 H 0.07 1.61 5.67 -2.39 -0.01 1.60 16 4 C -0.11 -1.23 3.98 30.59 0.12 -1.11 16 5 C -0.07 -0.82 0.80 -52.18 -0.04 -0.86 16 6 C -0.16 -2.20 6.93 71.98 0.50 -1.70 16 7 C -0.14 -1.32 8.47 71.98 0.61 -0.71 16 8 C -0.14 -2.11 8.14 71.98 0.59 -1.52 16 9 N -0.72 -14.94 2.61 -457.82 -1.19 -16.13 16 10 C 0.70 20.66 7.54 179.06 1.35 22.01 16 11 O -0.64 -24.10 15.44 -3.99 -0.06 -24.16 16 12 N -0.63 -17.60 2.97 -836.07 -2.48 -20.08 16 13 C 0.14 4.32 6.47 86.51 0.56 4.88 16 14 C -0.11 -4.11 5.21 30.82 0.16 -3.95 16 15 C -0.07 -2.74 2.10 -10.77 -0.02 -2.77 16 16 C 0.03 1.73 4.45 29.85 0.13 1.87 16 17 C -0.53 -29.39 8.39 25.60 0.21 -29.17 16 18 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 19 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 20 N -0.94 -57.17 13.29 21.44 0.28 -56.89 16 21 Si 0.96 44.38 29.54 68.60 2.03 46.40 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 25 C -0.12 -3.74 5.36 30.67 0.16 -3.57 16 26 C 0.12 2.72 6.39 86.36 0.55 3.27 16 27 H 0.03 0.77 8.11 -2.39 -0.02 0.75 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.70 7.49 -2.38 -0.02 0.68 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 1.08 5.08 -2.39 -0.01 1.07 16 35 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.04 0.76 6.32 -2.39 -0.02 0.74 16 39 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.41 6.47 4.32 -92.71 -0.40 6.07 16 42 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.07 2.55 6.99 -2.39 -0.02 2.53 16 44 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 45 H 0.07 2.67 6.91 -2.39 -0.02 2.66 16 46 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 47 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 48 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 49 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 50 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 51 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 52 H 0.10 1.58 5.63 -2.38 -0.01 1.57 16 53 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -70.49 395.01 5.16 -65.33 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.45 Total: 17.90 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 6.13 Total: -12.37 kcal Atomic # 7 Polarization: -89.71 SS G_CDS: -3.39 Total: -93.10 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.06 Total: -24.16 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -70.49 5.16 -65.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574568607.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.962 kcal (2) G-P(sol) polarization free energy of solvation -70.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds