Wall clock time and date at job start Tue Mar 31 2020 10:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47342 * 2 1 4 4 C 1.53005 * 109.46928 * 240.00724 * 2 1 3 5 5 C 1.50700 * 109.47337 * 64.99848 * 4 2 1 6 6 H 1.08005 * 119.99929 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00015 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00094 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00049 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47367 * 89.99921 * 9 7 5 11 11 H 1.48499 * 109.46968 * 209.99644 * 9 7 5 12 12 H 1.48495 * 109.47140 * 329.99320 * 9 7 5 13 13 C 1.52995 * 109.47626 * 120.00514 * 2 1 3 14 14 N 1.46908 * 109.47097 * 294.99932 * 13 2 1 15 15 C 1.46896 * 110.99993 * 179.97438 * 14 13 2 16 16 C 1.52992 * 109.46954 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.47161 * 180.02562 * 16 15 14 18 18 C 1.34773 * 119.99968 * 179.97438 * 17 16 15 19 19 O 1.21283 * 120.00360 * 359.73034 * 18 17 16 20 20 C 1.50706 * 120.00081 * 180.02562 * 18 17 16 21 21 C 1.52998 * 109.47348 * 179.72561 * 20 18 17 22 22 C 1.53000 * 109.47247 * 295.00243 * 21 20 18 23 23 C 1.52998 * 109.46908 * 179.97438 * 22 21 20 24 24 C 1.52999 * 109.47103 * 59.99943 * 23 22 21 25 25 C 1.53000 * 109.47285 * 299.99826 * 24 23 22 26 26 C 1.52998 * 109.47247 * 59.99885 * 25 24 23 27 27 H 1.09009 * 109.46974 * 299.99558 * 1 2 3 28 28 H 1.09001 * 109.47042 * 59.99318 * 1 2 3 29 29 H 1.08993 * 109.47010 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47222 * 184.99902 * 4 2 1 31 31 H 1.09000 * 109.47138 * 304.99847 * 4 2 1 32 32 H 0.96997 * 119.99968 * 180.02562 * 8 7 5 33 33 H 1.08993 * 109.47387 * 175.00038 * 13 2 1 34 34 H 1.09000 * 109.46872 * 54.99564 * 13 2 1 35 35 H 1.00898 * 110.99570 * 303.95268 * 14 13 2 36 36 H 1.09004 * 109.46619 * 60.00190 * 15 14 13 37 37 H 1.08993 * 109.47481 * 300.00171 * 15 14 13 38 38 H 1.09004 * 109.47116 * 60.00722 * 16 15 14 39 39 H 1.08998 * 109.47794 * 300.00634 * 16 15 14 40 40 H 0.96998 * 119.99507 * 0.02562 * 17 16 15 41 41 H 1.09001 * 109.46564 * 299.73030 * 20 18 17 42 42 H 1.08998 * 109.47012 * 59.72084 * 20 18 17 43 43 H 1.09004 * 109.46916 * 55.00165 * 21 20 18 44 44 H 1.08997 * 109.46764 * 299.99787 * 22 21 20 45 45 H 1.08994 * 109.47418 * 59.99707 * 22 21 20 46 46 H 1.08997 * 109.47372 * 299.99584 * 23 22 21 47 47 H 1.09000 * 109.46724 * 179.97438 * 23 22 21 48 48 H 1.08999 * 109.47615 * 179.97438 * 24 23 22 49 49 H 1.09004 * 109.47114 * 59.99893 * 24 23 22 50 50 H 1.08997 * 109.46764 * 300.00098 * 25 24 23 51 51 H 1.09004 * 109.47386 * 180.02562 * 25 24 23 52 52 H 1.08998 * 109.47433 * 179.97438 * 26 25 24 53 53 H 1.09004 * 109.46916 * 60.00078 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.6412 0.0573 -2.4766 6 1 1.0805 0.9748 -2.3756 7 6 1.9931 -0.4013 -3.7283 8 7 1.6447 0.2777 -4.7994 9 14 2.9635 -1.9879 -3.9030 10 1 2.0243 -3.1322 -4.0204 11 1 3.8124 -1.9176 -5.1194 12 1 3.8252 -2.1753 -2.7082 13 6 2.0401 -0.7213 1.2491 14 7 1.6515 0.0373 2.4457 15 6 2.1250 -0.6273 3.6671 16 6 1.7027 0.1906 4.8891 17 7 2.1754 -0.4719 6.1073 18 6 1.9185 0.0722 7.3133 19 8 1.3002 1.1127 7.3899 20 6 2.4053 -0.6090 8.5664 21 6 1.9894 0.2128 9.7881 22 6 2.7031 1.5659 9.7596 23 6 2.2866 2.3879 10.9810 24 6 2.6703 1.6357 12.2568 25 6 1.9566 0.2826 12.2854 26 6 2.3729 -0.5395 11.0640 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1263 -0.7994 -1.2058 31 1 1.6053 -1.7197 -1.2954 32 1 1.8920 -0.0451 -5.6800 33 1 3.1263 -0.7995 1.2054 34 1 1.6054 -1.7199 1.2950 35 1 1.9883 0.9871 2.3967 36 1 3.2119 -0.7052 3.6403 37 1 1.6907 -1.6251 3.7296 38 1 0.6158 0.2688 4.9161 39 1 2.1373 1.1883 4.8265 40 1 2.6740 -1.3017 6.0458 41 1 1.9671 -1.6049 8.6321 42 1 3.4917 -0.6914 8.5366 43 1 0.9109 0.3704 9.7700 44 1 3.7814 1.4082 9.7777 45 1 2.4295 2.1019 8.8509 46 1 1.2083 2.5455 10.9624 47 1 2.7954 3.3516 10.9609 48 1 2.3740 2.2214 13.1270 49 1 3.7487 1.4781 12.2754 50 1 0.8782 0.4402 12.2668 51 1 2.2295 -0.2531 13.1946 52 1 1.8649 -1.5036 11.0845 53 1 3.4514 -0.6970 11.0825 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602543708.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:57 Heat of formation + Delta-G solvation = -88.129906 kcal Electronic energy + Delta-G solvation = -25043.144255 eV Core-core repulsion = 21526.413303 eV Total energy + Delta-G solvation = -3516.730953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.33725 -38.52946 -37.28908 -35.43542 -33.70219 -33.05001 -31.99173 -31.03897 -29.28958 -27.56819 -26.86401 -24.83458 -22.98606 -22.63773 -21.95605 -21.84584 -20.46127 -20.05013 -19.13672 -17.23149 -16.79765 -16.30114 -16.20912 -15.67159 -15.50530 -14.73643 -14.58935 -14.50610 -14.33371 -14.17578 -13.95626 -13.67142 -13.55928 -12.92976 -12.76643 -12.53191 -12.46788 -12.31416 -12.10082 -11.90964 -11.69663 -11.58262 -11.50690 -11.44726 -11.29729 -10.97525 -10.79059 -10.74961 -10.64464 -10.47494 -10.38493 -9.87675 -9.81565 -9.74883 -9.43066 -9.29118 -9.07006 -8.52237 -8.32657 -6.02282 -3.99369 2.41114 2.85589 3.30419 3.37869 3.40657 4.25316 4.25888 4.35614 4.42195 4.46003 4.57709 4.73070 4.78207 4.85362 4.95243 5.01776 5.10237 5.13532 5.20967 5.24705 5.30178 5.31457 5.33063 5.35864 5.52389 5.55714 5.64712 5.69935 5.76016 5.78596 5.82392 5.84875 5.87060 5.94713 5.99147 6.08903 6.17791 6.22177 6.27813 6.38424 6.56862 6.81664 7.00796 7.10071 7.17166 7.23301 7.28884 7.42230 7.50365 7.82100 7.99105 8.57086 9.03546 9.60417 11.11157 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.043072 B = 0.001603 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.917935 B =17458.302307 C =17723.227930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.075 4.075 3 H 0.061 0.939 4 C -0.009 4.009 5 C -0.513 4.513 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.063 3.937 14 N -0.684 5.684 15 C 0.048 3.952 16 C 0.120 3.880 17 N -0.732 5.732 18 C 0.511 3.489 19 O -0.534 6.534 20 C -0.138 4.138 21 C -0.071 4.071 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.115 4.115 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.039 0.961 30 H 0.012 0.988 31 H 0.011 0.989 32 H 0.262 0.738 33 H 0.025 0.975 34 H 0.067 0.933 35 H 0.342 0.658 36 H 0.031 0.969 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.399 0.601 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.053 0.947 45 H 0.082 0.918 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.058 0.942 49 H 0.059 0.941 50 H 0.062 0.938 51 H 0.060 0.940 52 H 0.061 0.939 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.006 -3.243 34.555 34.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.094 4.094 3 H 0.079 0.921 4 C -0.047 4.047 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.065 4.065 14 N -0.315 5.315 15 C -0.082 4.082 16 C -0.004 4.004 17 N -0.385 5.385 18 C 0.298 3.702 19 O -0.411 6.411 20 C -0.178 4.178 21 C -0.090 4.090 22 C -0.158 4.158 23 C -0.155 4.155 24 C -0.158 4.158 25 C -0.156 4.156 26 C -0.153 4.153 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.160 0.840 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.233 0.767 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.072 0.928 45 H 0.100 0.900 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.078 0.922 50 H 0.080 0.920 51 H 0.079 0.921 52 H 0.080 0.920 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.935 -2.764 34.432 34.668 hybrid contribution 1.792 -1.179 -0.466 2.196 sum 4.727 -3.944 33.967 34.520 Atomic orbital electron populations 1.21608 0.95172 1.00669 1.00812 1.21024 0.96459 0.99096 0.92796 0.92094 1.19613 0.95678 0.95900 0.93480 1.21134 1.35296 1.09617 0.89092 0.90796 1.25031 0.95673 0.96927 0.95957 1.69916 1.47159 1.39318 0.97998 0.86798 0.80620 0.84390 0.77557 1.20369 1.21489 1.19197 1.22192 0.97169 0.97756 0.89424 1.60383 1.64029 1.06008 1.01072 1.22060 0.97565 0.98596 0.89941 1.21291 1.00680 0.96048 0.82393 1.46000 1.58333 1.27983 1.06152 1.20717 0.79477 0.85265 0.84781 1.90693 1.40208 1.23199 1.86967 1.21773 1.02827 1.00509 0.92702 1.20915 1.01363 0.94693 0.91993 1.21709 0.99108 0.95598 0.99340 1.21501 1.01389 0.98291 0.94362 1.21558 1.00252 0.96167 0.97837 1.21510 1.00526 0.95980 0.97615 1.21601 1.01219 0.98275 0.94156 0.93624 0.92169 0.94215 0.96967 0.97044 0.92825 0.95657 0.91428 0.84026 0.95049 0.90637 0.90440 0.91597 0.76697 0.88900 0.88971 0.90339 0.92779 0.89956 0.91966 0.92241 0.92306 0.92193 0.91966 0.92149 0.92008 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.89 37.16 0.33 -2.04 16 2 C -0.07 -1.44 2.48 -90.62 -0.22 -1.67 16 3 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 4 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 5 C -0.51 -14.46 8.96 -34.44 -0.31 -14.77 16 6 H 0.07 2.24 7.30 -52.48 -0.38 1.86 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.90 -27.92 13.96 55.43 0.77 -27.14 16 9 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 13 C 0.06 0.98 5.07 -3.82 -0.02 0.96 16 14 N -0.68 -8.88 5.96 -113.79 -0.68 -9.56 16 15 C 0.05 0.49 5.80 -3.83 -0.02 0.47 16 16 C 0.12 1.20 5.93 -4.04 -0.02 1.17 16 17 N -0.73 -5.91 5.56 -60.29 -0.33 -6.24 16 18 C 0.51 4.82 7.55 -10.98 -0.08 4.74 16 19 O -0.53 -7.15 13.97 5.56 0.08 -7.07 16 20 C -0.14 -0.84 5.18 -27.88 -0.14 -0.99 16 21 C -0.07 -0.50 1.84 -90.62 -0.17 -0.67 16 22 C -0.12 -0.97 4.94 -26.73 -0.13 -1.10 16 23 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 24 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16 25 C -0.12 -0.67 5.92 -26.73 -0.16 -0.83 16 26 C -0.11 -0.63 5.21 -26.73 -0.14 -0.77 16 27 H 0.04 0.78 7.75 -51.92 -0.40 0.37 16 28 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 31 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.34 4.27 8.73 -39.29 -0.34 3.93 16 36 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.40 2.12 8.47 -40.82 -0.35 1.77 16 41 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.69 7.96 -51.93 -0.41 0.28 16 44 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.87 5.95 -51.93 -0.31 0.56 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 52 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 53 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 LS Contribution 407.15 15.07 6.14 6.14 Total: -1.00 -32.12 407.15 -10.82 -42.94 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -10.52 Total: -0.17 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -1.60 Total: -15.92 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -0.24 Total: -42.95 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: 0.08 Total: -7.07 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.12 -10.82 -42.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602543708.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.190 kcal (2) G-P(sol) polarization free energy of solvation -32.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds