Wall clock time and date at job start Tue Mar 31 2020 10:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47342 * 2 1 4 4 C 1.53005 * 109.46928 * 240.00724 * 2 1 3 5 5 C 1.50700 * 109.47337 * 64.99848 * 4 2 1 6 6 H 1.08005 * 119.99929 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00015 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00094 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00049 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47367 * 89.99921 * 9 7 5 11 11 H 1.48499 * 109.46968 * 209.99644 * 9 7 5 12 12 H 1.48495 * 109.47140 * 329.99320 * 9 7 5 13 13 C 1.52995 * 109.47626 * 120.00514 * 2 1 3 14 14 N 1.46908 * 109.47097 * 294.99932 * 13 2 1 15 15 C 1.46896 * 110.99993 * 179.97438 * 14 13 2 16 16 C 1.52992 * 109.46954 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.47161 * 180.02562 * 16 15 14 18 18 C 1.34773 * 119.99968 * 179.97438 * 17 16 15 19 19 O 1.21283 * 120.00360 * 359.73034 * 18 17 16 20 20 C 1.50706 * 120.00081 * 180.02562 * 18 17 16 21 21 C 1.52998 * 109.47348 * 179.72561 * 20 18 17 22 22 C 1.53000 * 109.47247 * 295.00243 * 21 20 18 23 23 C 1.52998 * 109.46908 * 179.97438 * 22 21 20 24 24 C 1.52999 * 109.47103 * 59.99943 * 23 22 21 25 25 C 1.53000 * 109.47285 * 299.99826 * 24 23 22 26 26 C 1.52998 * 109.47247 * 59.99885 * 25 24 23 27 27 H 1.09009 * 109.46974 * 299.99558 * 1 2 3 28 28 H 1.09001 * 109.47042 * 59.99318 * 1 2 3 29 29 H 1.08993 * 109.47010 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47222 * 184.99902 * 4 2 1 31 31 H 1.09000 * 109.47138 * 304.99847 * 4 2 1 32 32 H 0.96997 * 119.99968 * 180.02562 * 8 7 5 33 33 H 1.08993 * 109.47387 * 175.00038 * 13 2 1 34 34 H 1.09000 * 109.46872 * 54.99564 * 13 2 1 35 35 H 1.00898 * 110.99570 * 303.95268 * 14 13 2 36 36 H 1.09004 * 109.46619 * 60.00190 * 15 14 13 37 37 H 1.08993 * 109.47481 * 300.00171 * 15 14 13 38 38 H 1.09004 * 109.47116 * 60.00722 * 16 15 14 39 39 H 1.08998 * 109.47794 * 300.00634 * 16 15 14 40 40 H 0.96998 * 119.99507 * 0.02562 * 17 16 15 41 41 H 1.09001 * 109.46564 * 299.73030 * 20 18 17 42 42 H 1.08998 * 109.47012 * 59.72084 * 20 18 17 43 43 H 1.09004 * 109.46916 * 55.00165 * 21 20 18 44 44 H 1.08997 * 109.46764 * 299.99787 * 22 21 20 45 45 H 1.08994 * 109.47418 * 59.99707 * 22 21 20 46 46 H 1.08997 * 109.47372 * 299.99584 * 23 22 21 47 47 H 1.09000 * 109.46724 * 179.97438 * 23 22 21 48 48 H 1.08999 * 109.47615 * 179.97438 * 24 23 22 49 49 H 1.09004 * 109.47114 * 59.99893 * 24 23 22 50 50 H 1.08997 * 109.46764 * 300.00098 * 25 24 23 51 51 H 1.09004 * 109.47386 * 180.02562 * 25 24 23 52 52 H 1.08998 * 109.47433 * 179.97438 * 26 25 24 53 53 H 1.09004 * 109.46916 * 60.00078 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.6412 0.0573 -2.4766 6 1 1.0805 0.9748 -2.3756 7 6 1.9931 -0.4013 -3.7283 8 7 1.6447 0.2777 -4.7994 9 14 2.9635 -1.9879 -3.9030 10 1 2.0243 -3.1322 -4.0204 11 1 3.8124 -1.9176 -5.1194 12 1 3.8252 -2.1753 -2.7082 13 6 2.0401 -0.7213 1.2491 14 7 1.6515 0.0373 2.4457 15 6 2.1250 -0.6273 3.6671 16 6 1.7027 0.1906 4.8891 17 7 2.1754 -0.4719 6.1073 18 6 1.9185 0.0722 7.3133 19 8 1.3002 1.1127 7.3899 20 6 2.4053 -0.6090 8.5664 21 6 1.9894 0.2128 9.7881 22 6 2.7031 1.5659 9.7596 23 6 2.2866 2.3879 10.9810 24 6 2.6703 1.6357 12.2568 25 6 1.9566 0.2826 12.2854 26 6 2.3729 -0.5395 11.0640 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1263 -0.7994 -1.2058 31 1 1.6053 -1.7197 -1.2954 32 1 1.8920 -0.0451 -5.6800 33 1 3.1263 -0.7995 1.2054 34 1 1.6054 -1.7199 1.2950 35 1 1.9883 0.9871 2.3967 36 1 3.2119 -0.7052 3.6403 37 1 1.6907 -1.6251 3.7296 38 1 0.6158 0.2688 4.9161 39 1 2.1373 1.1883 4.8265 40 1 2.6740 -1.3017 6.0458 41 1 1.9671 -1.6049 8.6321 42 1 3.4917 -0.6914 8.5366 43 1 0.9109 0.3704 9.7700 44 1 3.7814 1.4082 9.7777 45 1 2.4295 2.1019 8.8509 46 1 1.2083 2.5455 10.9624 47 1 2.7954 3.3516 10.9609 48 1 2.3740 2.2214 13.1270 49 1 3.7487 1.4781 12.2754 50 1 0.8782 0.4402 12.2668 51 1 2.2295 -0.2531 13.1946 52 1 1.8649 -1.5036 11.0845 53 1 3.4514 -0.6970 11.0825 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602543708.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:56 Heat of formation + Delta-G solvation = -108.791787 kcal Electronic energy + Delta-G solvation = -25044.040222 eV Core-core repulsion = 21526.413303 eV Total energy + Delta-G solvation = -3517.626919 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.03714 -39.14038 -38.48291 -36.58454 -35.06958 -33.92889 -33.53401 -31.55151 -30.39293 -29.11818 -27.75252 -26.19215 -24.00631 -23.48072 -23.12042 -22.53001 -21.15307 -20.72475 -20.56759 -18.92692 -17.91758 -17.10692 -17.06705 -16.44810 -16.31500 -16.19899 -15.56321 -15.46633 -15.40394 -15.00544 -14.93483 -14.66155 -14.50085 -14.37452 -14.10218 -13.48221 -13.32003 -13.27696 -13.01101 -12.92666 -12.81536 -12.74366 -12.48959 -12.47162 -12.36078 -12.13122 -11.95798 -11.82105 -11.70976 -11.46358 -11.31371 -11.27520 -11.17798 -11.04480 -10.89278 -10.73190 -10.54793 -10.05958 -9.35296 -8.25311 -6.28088 1.36859 1.38489 1.50135 1.70348 2.15450 2.38474 3.09963 3.36036 3.73208 3.79593 3.85854 3.91489 4.05549 4.13035 4.17240 4.26907 4.32229 4.35191 4.49297 4.49686 4.52143 4.60258 4.63678 4.69333 4.78095 4.83431 4.85641 4.88591 4.89886 4.92951 4.97404 4.99901 5.07379 5.10275 5.21708 5.27789 5.31989 5.35226 5.40306 5.40932 5.42787 5.46286 5.55971 5.59270 5.64507 5.70840 5.73738 6.05483 6.35185 6.43223 6.60132 6.79983 7.32645 7.35548 8.91575 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.043072 B = 0.001603 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.917935 B =17458.302307 C =17723.227930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.073 4.073 3 H 0.049 0.951 4 C -0.006 4.006 5 C -0.521 4.521 6 H 0.032 0.968 7 C -0.001 4.001 8 N -0.955 5.955 9 Si 0.951 3.049 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.244 1.244 13 C 0.078 3.922 14 N -0.692 5.692 15 C 0.058 3.942 16 C 0.128 3.872 17 N -0.720 5.720 18 C 0.505 3.495 19 O -0.581 6.581 20 C -0.130 4.130 21 C -0.070 4.070 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.109 4.109 27 H 0.064 0.936 28 H 0.025 0.975 29 H 0.045 0.955 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.264 0.736 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.344 0.656 36 H 0.047 0.953 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.416 0.584 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.054 0.946 44 H 0.063 0.937 45 H 0.051 0.949 46 H 0.047 0.953 47 H 0.057 0.943 48 H 0.062 0.938 49 H 0.066 0.934 50 H 0.053 0.947 51 H 0.073 0.927 52 H 0.074 0.926 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.967 -6.313 36.973 37.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.092 4.092 3 H 0.067 0.933 4 C -0.044 4.044 5 C -0.559 4.559 6 H 0.050 0.950 7 C -0.197 4.197 8 N -0.597 5.597 9 Si 0.774 3.226 10 H -0.193 1.193 11 H -0.213 1.213 12 H -0.168 1.168 13 C -0.051 4.051 14 N -0.324 5.324 15 C -0.072 4.072 16 C 0.004 3.996 17 N -0.374 5.374 18 C 0.293 3.707 19 O -0.461 6.461 20 C -0.170 4.170 21 C -0.089 4.089 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.155 4.155 25 C -0.158 4.158 26 C -0.147 4.147 27 H 0.083 0.917 28 H 0.044 0.956 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.162 0.838 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.253 0.747 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.085 0.915 50 H 0.072 0.928 51 H 0.092 0.908 52 H 0.092 0.908 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.911 -5.863 36.878 37.662 hybrid contribution 1.104 -0.088 -1.210 1.640 sum 6.015 -5.951 35.668 36.657 Atomic orbital electron populations 1.21509 0.95208 1.00735 0.99979 1.20914 0.96392 0.98560 0.93312 0.93261 1.19565 0.95972 0.95757 0.93115 1.21480 1.34314 1.08690 0.91404 0.94972 1.26040 0.97056 1.01087 0.95480 1.70085 1.49119 1.41724 0.98722 0.85651 0.79288 0.79343 0.78294 1.19328 1.21306 1.16776 1.21894 0.97384 0.97478 0.88349 1.60294 1.64581 1.06186 1.01316 1.22016 0.98437 0.98492 0.88238 1.21043 0.99382 0.95848 0.83356 1.45879 1.57931 1.28359 1.05213 1.21397 0.78623 0.84729 0.85936 1.90687 1.42383 1.25398 1.87627 1.21806 1.04275 1.00830 0.90051 1.20878 0.99757 0.94609 0.93654 1.21651 0.99729 0.96109 0.98080 1.21505 1.00482 0.98542 0.95192 1.21539 1.00697 0.96346 0.96929 1.21538 0.99981 0.95882 0.98432 1.21573 1.02047 0.98337 0.92730 0.91749 0.95628 0.93619 0.96381 0.96341 0.92720 0.94909 0.90697 0.83811 0.93499 0.89621 0.92455 0.92810 0.74686 0.86393 0.86582 0.92786 0.91787 0.93026 0.93368 0.92435 0.91917 0.91485 0.92834 0.90841 0.90780 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.41 8.89 71.98 0.64 -3.77 16 2 C -0.07 -2.74 2.48 -10.79 -0.03 -2.77 16 3 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 4 C -0.01 -0.28 3.52 29.85 0.10 -0.18 16 5 C -0.52 -29.97 8.96 25.60 0.23 -29.74 16 6 H 0.03 2.05 7.30 -2.91 -0.02 2.03 16 7 C 0.00 -0.04 5.47 84.65 0.46 0.42 16 8 N -0.96 -60.60 13.96 21.45 0.30 -60.30 16 9 Si 0.95 44.18 27.47 68.60 1.88 46.07 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.24 -10.38 6.54 99.48 0.65 -9.72 16 13 C 0.08 2.20 5.07 86.30 0.44 2.64 16 14 N -0.69 -16.49 5.96 -513.91 -3.06 -19.55 16 15 C 0.06 1.00 5.80 86.30 0.50 1.50 16 16 C 0.13 2.40 5.93 86.38 0.51 2.91 16 17 N -0.72 -10.17 5.56 -463.05 -2.57 -12.75 16 18 C 0.50 8.98 7.55 87.66 0.66 9.64 16 19 O -0.58 -15.97 13.97 -3.04 -0.04 -16.01 16 20 C -0.13 -1.26 5.18 29.85 0.15 -1.11 16 21 C -0.07 -0.91 1.84 -10.79 -0.02 -0.93 16 22 C -0.12 -1.88 4.94 30.59 0.15 -1.73 16 23 C -0.12 -1.78 5.92 30.59 0.18 -1.59 16 24 C -0.12 -1.28 5.92 30.59 0.18 -1.09 16 25 C -0.12 -1.16 5.92 30.59 0.18 -0.98 16 26 C -0.11 -0.93 5.21 30.59 0.16 -0.77 16 27 H 0.06 2.15 7.75 -2.38 -0.02 2.14 16 28 H 0.02 1.10 6.95 -2.39 -0.02 1.09 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.02 0.80 7.20 -2.38 -0.02 0.79 16 31 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 32 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 33 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.34 8.08 8.73 -89.70 -0.78 7.30 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.42 3.03 8.47 -92.71 -0.79 2.25 16 41 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.05 0.97 7.96 -2.38 -0.02 0.95 16 44 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.05 1.15 5.95 -2.39 -0.01 1.14 16 46 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 50 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 51 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 52 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 53 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 Total: -1.00 -72.65 407.15 0.25 -72.40 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -0.77 Total: 17.70 kcal Atomic # 6 Polarization: -32.06 SS G_CDS: 4.51 Total: -27.55 kcal Atomic # 7 Polarization: -87.27 SS G_CDS: -5.33 Total: -92.60 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.04 Total: -16.01 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.07 kcal Total: -72.65 0.25 -72.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602543708.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.396 kcal (2) G-P(sol) polarization free energy of solvation -72.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds