Wall clock time and date at job start Tue Mar 31 2020 09:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46906 * 109.47189 * 2 1 4 4 C 1.46907 * 110.99777 * 200.01325 * 3 2 1 5 5 C 1.50704 * 109.46877 * 66.04545 * 4 3 2 6 6 H 1.07998 * 120.00269 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99739 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00211 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99889 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46933 * 60.00654 * 9 7 5 11 11 H 1.48495 * 109.46905 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47163 * 300.00260 * 9 7 5 13 13 C 1.46894 * 111.00006 * 76.05970 * 3 2 1 14 14 C 1.50699 * 109.46931 * 200.15283 * 13 3 2 15 15 O 1.21281 * 119.99955 * 356.02383 * 14 13 3 16 16 N 1.34785 * 120.00011 * 176.02696 * 14 13 3 17 17 C 1.46498 * 119.99921 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47206 * 180.02562 * 17 16 14 19 19 C 1.52995 * 109.47387 * 179.97438 * 18 17 16 20 20 C 1.52994 * 109.47119 * 179.97438 * 19 18 17 21 21 C 1.52993 * 109.47215 * 65.00274 * 20 19 18 22 22 C 1.53001 * 109.47777 * 179.97438 * 21 20 19 23 23 C 1.53002 * 109.47011 * 300.00207 * 22 21 20 24 24 C 1.53005 * 109.47065 * 59.99635 * 23 22 21 25 25 C 1.53002 * 109.47108 * 185.00197 * 20 19 18 26 26 H 1.09003 * 109.47291 * 54.73803 * 1 2 3 27 27 H 1.09001 * 109.46980 * 174.74167 * 1 2 3 28 28 H 1.09007 * 109.46980 * 294.74047 * 1 2 3 29 29 H 1.08998 * 109.47498 * 239.99855 * 2 1 3 30 30 H 1.08999 * 109.47561 * 119.99675 * 2 1 3 31 31 H 1.08999 * 109.46512 * 186.04199 * 4 3 2 32 32 H 1.08990 * 109.47097 * 306.04567 * 4 3 2 33 33 H 0.96993 * 119.99913 * 180.02562 * 8 7 5 34 34 H 1.09007 * 109.47259 * 80.15829 * 13 3 2 35 35 H 1.08994 * 109.47383 * 320.15361 * 13 3 2 36 36 H 0.97002 * 119.99886 * 359.97438 * 16 14 13 37 37 H 1.09004 * 109.47331 * 59.99750 * 17 16 14 38 38 H 1.09008 * 109.46914 * 299.99729 * 17 16 14 39 39 H 1.09000 * 109.46785 * 59.99457 * 18 17 16 40 40 H 1.08998 * 109.46414 * 300.00220 * 18 17 16 41 41 H 1.09004 * 109.47076 * 59.99729 * 19 18 17 42 42 H 1.08998 * 109.47404 * 300.00111 * 19 18 17 43 43 H 1.08999 * 109.47375 * 304.99967 * 20 19 18 44 44 H 1.09004 * 109.47346 * 300.00183 * 21 20 19 45 45 H 1.09009 * 109.47218 * 59.99582 * 21 20 19 46 46 H 1.08995 * 109.47716 * 179.97438 * 22 21 20 47 47 H 1.08999 * 109.46910 * 59.99633 * 22 21 20 48 48 H 1.08999 * 109.47265 * 299.99771 * 23 22 21 49 49 H 1.09001 * 109.47341 * 179.97438 * 23 22 21 50 50 H 1.08999 * 109.46828 * 180.02562 * 24 23 22 51 51 H 1.08999 * 109.47427 * 60.00224 * 24 23 22 52 52 H 1.08999 * 109.47265 * 300.00400 * 25 20 19 53 53 H 1.08995 * 109.47225 * 59.99906 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4101 1.4518 -0.4694 5 6 3.4701 1.0502 -1.9207 6 1 2.5659 0.7735 -2.4423 7 6 4.6794 1.0370 -2.5828 8 7 5.7806 1.3744 -1.9478 9 14 4.7540 0.5386 -4.3816 10 1 3.9145 1.4621 -5.1863 11 1 6.1595 0.6061 -4.8561 12 1 4.2474 -0.8492 -4.5321 13 6 1.8837 1.9915 1.3310 14 6 1.9129 3.4928 1.2042 15 8 2.1072 4.0064 0.1229 16 7 1.7232 4.2649 2.2927 17 6 1.7511 5.7244 2.1693 18 6 1.5112 6.3569 3.5417 19 6 1.5409 7.8811 3.4130 20 6 1.3004 8.5135 4.7852 21 6 2.4610 8.1635 5.7186 22 6 2.2209 8.7963 7.0908 23 6 2.1267 10.3162 6.9419 24 6 0.9660 10.6663 6.0085 25 6 1.2059 10.0334 4.6369 26 1 -0.3634 0.5933 -0.8391 27 1 -0.3633 -1.0234 -0.0942 28 1 -0.3633 0.4301 0.9334 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.7824 2.4702 -0.3585 32 1 4.0258 0.7734 0.1211 33 1 6.6313 1.3655 -2.4137 34 1 2.7076 1.6643 1.9653 35 1 0.9378 1.6828 1.7760 36 1 1.5675 3.8541 3.1575 37 1 0.9708 6.0457 1.4793 38 1 2.7236 6.0384 1.7899 39 1 2.2917 6.0354 4.2313 40 1 0.5390 6.0427 3.9214 41 1 0.7606 8.2028 2.7233 42 1 2.5133 8.1948 3.0334 43 1 0.3695 8.1308 5.2036 44 1 2.5284 7.0806 5.8244 45 1 3.3919 8.5462 5.3002 46 1 3.0475 8.5466 7.7559 47 1 1.2899 8.4140 7.5093 48 1 3.0576 10.6987 6.5233 49 1 1.9552 10.7671 7.9194 50 1 0.8992 11.7490 5.9021 51 1 0.0351 10.2839 6.4271 52 1 2.1367 10.4162 4.2185 53 1 0.3791 10.2828 3.9719 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081513708.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:39 Heat of formation + Delta-G solvation = -74.858185 kcal Electronic energy + Delta-G solvation = -25713.481819 eV Core-core repulsion = 22197.326371 eV Total energy + Delta-G solvation = -3516.155448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.40910 -39.01220 -36.55520 -35.43362 -33.40187 -32.51917 -31.10743 -30.49291 -29.92675 -28.05390 -25.89889 -24.62093 -23.11704 -22.31957 -22.08671 -21.01829 -20.45108 -20.01392 -19.42745 -16.64931 -16.36311 -15.96606 -15.81320 -15.43433 -14.96623 -14.59753 -14.53298 -14.32057 -14.07674 -13.93396 -13.76437 -13.39161 -13.19290 -12.79725 -12.58591 -12.52199 -12.27421 -12.08724 -11.89815 -11.76465 -11.57572 -11.43441 -11.40678 -11.21503 -11.10181 -10.92952 -10.87802 -10.72387 -10.64644 -10.43617 -10.31468 -10.21218 -10.09250 -9.74857 -9.27328 -8.95248 -8.70351 -8.30608 -7.17864 -5.90446 -3.89665 3.28501 3.41402 3.44827 3.45454 3.49375 4.31730 4.37243 4.42820 4.52852 4.74253 4.80770 4.85799 4.97788 5.02501 5.11595 5.17828 5.21156 5.23275 5.32117 5.36665 5.43326 5.45660 5.54004 5.56671 5.61470 5.66017 5.70842 5.76901 5.80010 5.82842 5.84540 5.87707 5.92836 5.96139 6.00726 6.01315 6.09361 6.12568 6.17142 6.23606 6.32984 6.73214 6.77333 6.82283 7.39597 7.40687 7.83218 7.94233 8.24569 8.30306 8.63583 8.86617 9.16191 9.72401 11.21040 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.019799 B = 0.002134 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.852904 B =13118.736721 C =13864.907344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.055 3.945 3 N -0.520 5.520 4 C 0.194 3.806 5 C -0.498 4.498 6 H 0.062 0.938 7 C 0.053 3.947 8 N -0.901 5.901 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.037 3.963 14 C 0.509 3.491 15 O -0.499 6.499 16 N -0.746 5.746 17 C 0.121 3.879 18 C -0.130 4.130 19 C -0.113 4.113 20 C -0.085 4.085 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.120 4.120 25 C -0.116 4.116 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.040 0.960 29 H 0.090 0.910 30 H 0.018 0.982 31 H 0.041 0.959 32 H -0.014 1.014 33 H 0.260 0.740 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.394 0.606 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.061 0.939 49 H 0.058 0.942 50 H 0.059 0.941 51 H 0.060 0.940 52 H 0.062 0.938 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.518 13.768 20.307 26.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 N -0.245 5.245 4 C 0.070 3.930 5 C -0.537 4.537 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.095 4.095 14 C 0.294 3.706 15 O -0.371 6.371 16 N -0.402 5.402 17 C -0.003 4.003 18 C -0.168 4.168 19 C -0.151 4.151 20 C -0.104 4.104 21 C -0.155 4.155 22 C -0.158 4.158 23 C -0.158 4.158 24 C -0.157 4.157 25 C -0.153 4.153 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.108 0.892 30 H 0.037 0.963 31 H 0.059 0.941 32 H 0.003 0.997 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.226 0.774 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.079 0.921 49 H 0.077 0.923 50 H 0.078 0.922 51 H 0.079 0.921 52 H 0.081 0.919 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.447 14.431 19.094 26.114 hybrid contribution 0.622 -0.826 0.108 1.040 sum -9.825 13.605 19.202 25.501 Atomic orbital electron populations 1.21810 0.96639 1.00361 1.01351 1.22015 0.94218 0.89871 1.01167 1.61867 1.26652 1.16498 1.19444 1.19801 0.80611 0.97368 0.95269 1.21081 0.93162 1.44091 0.95383 0.91988 1.24974 0.95668 0.95819 0.98286 1.69955 0.98378 1.49138 1.36614 0.86566 0.76731 0.78912 0.85204 1.20188 1.21469 1.20382 1.21894 1.01542 0.91726 0.94345 1.20858 0.76253 0.89666 0.83806 1.90756 1.44947 1.74852 1.26540 1.46059 1.76499 1.06453 1.11150 1.21246 1.02069 0.80086 0.96853 1.21833 1.02343 0.95723 0.96859 1.21555 1.02547 0.94157 0.96856 1.21154 0.98821 0.95122 0.95272 1.21658 0.98389 1.00531 0.94900 1.21538 1.01571 0.95395 0.97269 1.21544 0.98819 0.96179 0.99258 1.21524 0.98477 1.00044 0.95669 1.21586 1.01886 0.95005 0.96848 0.92009 0.93294 0.94070 0.89212 0.96332 0.94061 0.99676 0.93061 0.92882 0.89599 0.77351 0.91957 0.91847 0.91189 0.91536 0.91595 0.91527 0.91270 0.91667 0.91934 0.92188 0.92156 0.92062 0.92348 0.92230 0.92138 0.91933 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.96 37.16 0.37 -1.91 16 2 C 0.06 1.08 5.51 -3.82 -0.02 1.06 16 3 N -0.52 -11.75 4.01 -237.52 -0.95 -12.71 16 4 C 0.19 5.37 4.33 -4.97 -0.02 5.35 16 5 C -0.50 -14.79 8.23 -34.44 -0.28 -15.07 16 6 H 0.06 1.82 7.32 -52.49 -0.38 1.43 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -28.02 13.29 55.43 0.74 -27.29 16 9 Si 0.90 22.69 29.54 -169.99 -5.02 17.66 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.04 0.67 5.30 -4.98 -0.03 0.64 16 14 C 0.51 9.64 7.56 -10.98 -0.08 9.55 16 15 O -0.50 -12.22 15.08 5.56 0.08 -12.14 16 16 N -0.75 -10.16 5.56 -60.29 -0.33 -10.49 16 17 C 0.12 1.51 5.67 -4.04 -0.02 1.49 16 18 C -0.13 -1.10 5.08 -26.73 -0.14 -1.24 16 19 C -0.11 -0.89 4.68 -26.74 -0.13 -1.02 16 20 C -0.09 -0.59 2.19 -90.62 -0.20 -0.79 16 21 C -0.12 -0.81 4.96 -26.73 -0.13 -0.95 16 22 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 23 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 24 C -0.12 -0.74 5.92 -26.75 -0.16 -0.90 16 25 C -0.12 -0.78 5.20 -26.75 -0.14 -0.92 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.58 6.91 -51.92 -0.36 0.22 16 29 H 0.09 1.95 6.58 -51.93 -0.34 1.61 16 30 H 0.02 0.33 7.99 -51.93 -0.42 -0.08 16 31 H 0.04 1.27 6.63 -51.93 -0.34 0.93 16 32 H -0.01 -0.42 8.12 -51.93 -0.42 -0.84 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.05 0.92 7.99 -51.93 -0.42 0.50 16 35 H 0.09 1.26 6.58 -51.93 -0.34 0.91 16 36 H 0.39 3.96 8.47 -40.82 -0.35 3.62 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 39 H 0.07 0.56 6.57 -51.93 -0.34 0.22 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.45 6.57 -51.93 -0.34 0.11 16 45 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 50 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 52 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 53 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 407.13 15.07 6.14 6.14 Total: -1.00 -34.69 407.13 -11.12 -45.81 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -10.37 Total: -1.96 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -1.39 Total: -5.02 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.55 Total: -50.48 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.08 Total: -12.14 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.69 -11.12 -45.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081513708.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.052 kcal (2) G-P(sol) polarization free energy of solvation -34.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds