Wall clock time and date at job start Tue Mar 31 2020 09:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46906 * 109.47189 * 2 1 4 4 C 1.46907 * 110.99777 * 200.01325 * 3 2 1 5 5 C 1.50704 * 109.46877 * 66.04545 * 4 3 2 6 6 H 1.07998 * 120.00269 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99739 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00211 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99889 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46933 * 60.00654 * 9 7 5 11 11 H 1.48495 * 109.46905 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47163 * 300.00260 * 9 7 5 13 13 C 1.46894 * 111.00006 * 76.05970 * 3 2 1 14 14 C 1.50699 * 109.46931 * 200.15283 * 13 3 2 15 15 O 1.21281 * 119.99955 * 356.02383 * 14 13 3 16 16 N 1.34785 * 120.00011 * 176.02696 * 14 13 3 17 17 C 1.46498 * 119.99921 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47206 * 180.02562 * 17 16 14 19 19 C 1.52995 * 109.47387 * 179.97438 * 18 17 16 20 20 C 1.52994 * 109.47119 * 179.97438 * 19 18 17 21 21 C 1.52993 * 109.47215 * 65.00274 * 20 19 18 22 22 C 1.53001 * 109.47777 * 179.97438 * 21 20 19 23 23 C 1.53002 * 109.47011 * 300.00207 * 22 21 20 24 24 C 1.53005 * 109.47065 * 59.99635 * 23 22 21 25 25 C 1.53002 * 109.47108 * 185.00197 * 20 19 18 26 26 H 1.09003 * 109.47291 * 54.73803 * 1 2 3 27 27 H 1.09001 * 109.46980 * 174.74167 * 1 2 3 28 28 H 1.09007 * 109.46980 * 294.74047 * 1 2 3 29 29 H 1.08998 * 109.47498 * 239.99855 * 2 1 3 30 30 H 1.08999 * 109.47561 * 119.99675 * 2 1 3 31 31 H 1.08999 * 109.46512 * 186.04199 * 4 3 2 32 32 H 1.08990 * 109.47097 * 306.04567 * 4 3 2 33 33 H 0.96993 * 119.99913 * 180.02562 * 8 7 5 34 34 H 1.09007 * 109.47259 * 80.15829 * 13 3 2 35 35 H 1.08994 * 109.47383 * 320.15361 * 13 3 2 36 36 H 0.97002 * 119.99886 * 359.97438 * 16 14 13 37 37 H 1.09004 * 109.47331 * 59.99750 * 17 16 14 38 38 H 1.09008 * 109.46914 * 299.99729 * 17 16 14 39 39 H 1.09000 * 109.46785 * 59.99457 * 18 17 16 40 40 H 1.08998 * 109.46414 * 300.00220 * 18 17 16 41 41 H 1.09004 * 109.47076 * 59.99729 * 19 18 17 42 42 H 1.08998 * 109.47404 * 300.00111 * 19 18 17 43 43 H 1.08999 * 109.47375 * 304.99967 * 20 19 18 44 44 H 1.09004 * 109.47346 * 300.00183 * 21 20 19 45 45 H 1.09009 * 109.47218 * 59.99582 * 21 20 19 46 46 H 1.08995 * 109.47716 * 179.97438 * 22 21 20 47 47 H 1.08999 * 109.46910 * 59.99633 * 22 21 20 48 48 H 1.08999 * 109.47265 * 299.99771 * 23 22 21 49 49 H 1.09001 * 109.47341 * 179.97438 * 23 22 21 50 50 H 1.08999 * 109.46828 * 180.02562 * 24 23 22 51 51 H 1.08999 * 109.47427 * 60.00224 * 24 23 22 52 52 H 1.08999 * 109.47265 * 300.00400 * 25 20 19 53 53 H 1.08995 * 109.47225 * 59.99906 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4101 1.4518 -0.4694 5 6 3.4701 1.0502 -1.9207 6 1 2.5659 0.7735 -2.4423 7 6 4.6794 1.0370 -2.5828 8 7 5.7806 1.3744 -1.9478 9 14 4.7540 0.5386 -4.3816 10 1 3.9145 1.4621 -5.1863 11 1 6.1595 0.6061 -4.8561 12 1 4.2474 -0.8492 -4.5321 13 6 1.8837 1.9915 1.3310 14 6 1.9129 3.4928 1.2042 15 8 2.1072 4.0064 0.1229 16 7 1.7232 4.2649 2.2927 17 6 1.7511 5.7244 2.1693 18 6 1.5112 6.3569 3.5417 19 6 1.5409 7.8811 3.4130 20 6 1.3004 8.5135 4.7852 21 6 2.4610 8.1635 5.7186 22 6 2.2209 8.7963 7.0908 23 6 2.1267 10.3162 6.9419 24 6 0.9660 10.6663 6.0085 25 6 1.2059 10.0334 4.6369 26 1 -0.3634 0.5933 -0.8391 27 1 -0.3633 -1.0234 -0.0942 28 1 -0.3633 0.4301 0.9334 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.7824 2.4702 -0.3585 32 1 4.0258 0.7734 0.1211 33 1 6.6313 1.3655 -2.4137 34 1 2.7076 1.6643 1.9653 35 1 0.9378 1.6828 1.7760 36 1 1.5675 3.8541 3.1575 37 1 0.9708 6.0457 1.4793 38 1 2.7236 6.0384 1.7899 39 1 2.2917 6.0354 4.2313 40 1 0.5390 6.0427 3.9214 41 1 0.7606 8.2028 2.7233 42 1 2.5133 8.1948 3.0334 43 1 0.3695 8.1308 5.2036 44 1 2.5284 7.0806 5.8244 45 1 3.3919 8.5462 5.3002 46 1 3.0475 8.5466 7.7559 47 1 1.2899 8.4140 7.5093 48 1 3.0576 10.6987 6.5233 49 1 1.9552 10.7671 7.9194 50 1 0.8992 11.7490 5.9021 51 1 0.0351 10.2839 6.4271 52 1 2.1367 10.4162 4.2185 53 1 0.3791 10.2828 3.9719 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081513708.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:38 Heat of formation + Delta-G solvation = -97.224488 kcal Electronic energy + Delta-G solvation = -25714.451694 eV Core-core repulsion = 22197.326371 eV Total energy + Delta-G solvation = -3517.125323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.75645 -39.73383 -38.15303 -36.57058 -34.75754 -34.36641 -31.81793 -31.61532 -31.10905 -29.72788 -27.32570 -25.87846 -24.25398 -23.73777 -22.83950 -22.13531 -21.60548 -20.85929 -20.56048 -18.58936 -18.01733 -17.10012 -16.97279 -16.63901 -16.22391 -15.94050 -15.59290 -15.44972 -15.15263 -15.00943 -14.83438 -14.69511 -14.24553 -14.11981 -13.89202 -13.79067 -13.50322 -13.20072 -13.01483 -12.84947 -12.79108 -12.60557 -12.56610 -12.40081 -12.33972 -12.24136 -11.94661 -11.90216 -11.84910 -11.61791 -11.54641 -11.28023 -11.27098 -10.91692 -10.77354 -10.64746 -10.54802 -10.01266 -8.95967 -8.18841 -6.27233 1.37596 1.43105 1.50310 1.79323 2.20938 2.41187 3.13366 3.38976 3.71071 3.81802 3.87319 3.99725 4.08636 4.14301 4.20246 4.27584 4.34760 4.38207 4.43321 4.50631 4.58191 4.63737 4.65883 4.66590 4.69820 4.74880 4.77623 4.83671 4.87969 4.99568 5.02387 5.10034 5.11138 5.17466 5.21658 5.22584 5.30605 5.31057 5.38248 5.39070 5.40260 5.46131 5.49469 5.55235 5.58140 5.65665 5.67340 6.08967 6.40607 6.52934 6.78165 6.87585 7.40414 7.46662 8.92696 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.019799 B = 0.002134 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.852904 B =13118.736721 C =13864.907344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.053 3.947 3 N -0.537 5.537 4 C 0.215 3.785 5 C -0.518 4.518 6 H 0.059 0.941 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.971 3.029 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.261 1.261 13 C 0.036 3.964 14 C 0.504 3.496 15 O -0.566 6.566 16 N -0.721 5.721 17 C 0.120 3.880 18 C -0.115 4.115 19 C -0.112 4.112 20 C -0.079 4.079 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.117 4.117 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.036 0.964 31 H 0.000 1.000 32 H -0.038 1.038 33 H 0.263 0.737 34 H 0.064 0.936 35 H 0.131 0.869 36 H 0.415 0.585 37 H 0.051 0.949 38 H 0.039 0.961 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.055 0.945 49 H 0.065 0.935 50 H 0.063 0.937 51 H 0.064 0.936 52 H 0.055 0.945 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.361 13.174 21.770 28.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.075 4.075 3 N -0.262 5.262 4 C 0.089 3.911 5 C -0.556 4.556 6 H 0.077 0.923 7 C -0.202 4.202 8 N -0.578 5.578 9 Si 0.795 3.205 10 H -0.200 1.200 11 H -0.206 1.206 12 H -0.186 1.186 13 C -0.095 4.095 14 C 0.291 3.709 15 O -0.443 6.443 16 N -0.377 5.377 17 C -0.003 4.003 18 C -0.152 4.152 19 C -0.150 4.150 20 C -0.097 4.097 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.159 4.159 24 C -0.156 4.156 25 C -0.154 4.154 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.018 0.982 32 H -0.021 1.021 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.149 0.851 36 H 0.252 0.748 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.074 0.926 49 H 0.083 0.917 50 H 0.081 0.919 51 H 0.082 0.918 52 H 0.073 0.927 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.326 13.828 20.638 27.732 hybrid contribution 1.179 -0.601 -0.252 1.347 sum -11.147 13.226 20.386 26.735 Atomic orbital electron populations 1.21715 0.93232 1.02069 1.01942 1.22077 0.96853 0.87992 1.00539 1.61707 1.23172 1.18730 1.22603 1.19320 0.83328 0.93977 0.94513 1.21418 0.93302 1.44227 0.96652 0.92267 1.25959 0.95185 0.95606 1.03415 1.70092 0.98995 1.50011 1.38679 0.85423 0.77054 0.79186 0.78856 1.19970 1.20629 1.18585 1.22040 1.04171 0.90940 0.92387 1.21135 0.75446 0.90441 0.83897 1.90731 1.48397 1.75909 1.29289 1.45839 1.74136 1.06812 1.10863 1.21334 1.00440 0.79346 0.99223 1.21746 1.03638 0.95645 0.94208 1.21539 1.02016 0.93808 0.97627 1.21095 0.99076 0.95148 0.94419 1.21661 0.97932 1.00694 0.95247 1.21533 1.01874 0.95415 0.96847 1.21555 0.98580 0.96154 0.99596 1.21517 0.98606 1.00266 0.95183 1.21589 1.01590 0.94918 0.97331 0.93745 0.90579 0.91547 0.92263 0.94583 0.98182 1.02051 0.92836 0.91831 0.85094 0.74763 0.93043 0.94233 0.90238 0.89658 0.91713 0.92539 0.90604 0.91419 0.92850 0.91999 0.91695 0.92600 0.91651 0.91867 0.91751 0.92651 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.96 71.98 0.72 -3.11 16 2 C 0.05 2.02 5.51 86.30 0.48 2.50 16 3 N -0.54 -24.51 4.01 -905.37 -3.63 -28.14 16 4 C 0.21 12.38 4.33 85.56 0.37 12.75 16 5 C -0.52 -31.70 8.23 25.60 0.21 -31.49 16 6 H 0.06 3.56 7.32 -2.91 -0.02 3.54 16 7 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 8 N -0.94 -59.99 13.29 21.45 0.28 -59.70 16 9 Si 0.97 47.23 29.54 68.60 2.03 49.25 16 10 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 12 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 13 C 0.04 1.26 5.30 85.56 0.45 1.71 16 14 C 0.50 19.19 7.56 87.66 0.66 19.85 16 15 O -0.57 -28.94 15.08 -3.03 -0.05 -28.98 16 16 N -0.72 -18.87 5.56 -463.04 -2.57 -21.44 16 17 C 0.12 2.98 5.67 86.38 0.49 3.47 16 18 C -0.11 -1.75 5.08 30.59 0.16 -1.60 16 19 C -0.11 -1.67 4.68 30.59 0.14 -1.52 16 20 C -0.08 -0.98 2.19 -10.80 -0.02 -1.00 16 21 C -0.12 -1.47 4.96 30.59 0.15 -1.32 16 22 C -0.12 -1.32 5.92 30.60 0.18 -1.14 16 23 C -0.12 -1.33 5.92 30.60 0.18 -1.15 16 24 C -0.12 -1.29 5.92 30.58 0.18 -1.11 16 25 C -0.12 -1.45 5.20 30.58 0.16 -1.29 16 26 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.07 1.58 6.91 -2.38 -0.02 1.57 16 29 H 0.06 2.60 6.58 -2.39 -0.02 2.59 16 30 H 0.04 1.24 7.99 -2.39 -0.02 1.22 16 31 H 0.00 0.00 6.63 -2.39 -0.02 -0.01 16 32 H -0.04 -2.30 8.12 -2.39 -0.02 -2.32 16 33 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 34 H 0.06 2.13 7.99 -2.38 -0.02 2.11 16 35 H 0.13 3.35 6.58 -2.39 -0.02 3.34 16 36 H 0.42 7.24 8.47 -92.71 -0.79 6.45 16 37 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.08 1.10 6.57 -2.39 -0.02 1.09 16 40 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.07 0.81 6.57 -2.39 -0.02 0.79 16 45 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 46 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 51 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 52 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 53 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -79.58 407.13 1.10 -78.48 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.06 Total: 14.79 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 4.97 Total: -4.26 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -5.91 Total: -109.28 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -0.05 Total: -28.98 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.25 kcal Total: -79.58 1.10 -78.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081513708.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.745 kcal (2) G-P(sol) polarization free energy of solvation -79.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds