Wall clock time and date at job start Tue Mar 31 2020 09:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76195 * 102.99929 * 2 1 4 4 C 1.39345 * 119.93316 * 359.97438 * 3 2 1 5 5 C 1.36567 * 120.07011 * 179.97438 * 4 3 2 6 6 C 1.39917 * 119.92867 * 0.02562 * 5 4 3 7 7 C 1.47342 * 120.06866 * 179.97438 * 6 5 4 8 8 O 1.21519 * 119.99999 * 179.97438 * 7 6 5 9 9 O 1.34773 * 119.99763 * 359.97438 * 7 6 5 10 10 C 1.45196 * 116.99830 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47407 * 180.02562 * 10 9 7 12 12 C 1.50693 * 109.47588 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00055 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00249 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99980 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00045 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47324 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46932 * 119.99711 * 16 14 12 19 19 H 1.48498 * 109.47214 * 239.99930 * 16 14 12 20 20 C 1.39876 * 119.86529 * 0.02562 * 6 5 4 21 21 C 1.36614 * 119.92880 * 359.71731 * 20 6 5 22 22 N 1.48018 * 119.96634 * 180.30258 * 21 20 6 23 23 O 1.21799 * 120.00325 * 0.23391 * 22 21 20 24 24 O 1.21797 * 120.00096 * 180.24033 * 22 21 20 25 25 H 1.09001 * 109.47190 * 299.99963 * 1 2 3 26 26 H 1.09004 * 109.47089 * 60.00096 * 1 2 3 27 27 H 1.09004 * 109.47568 * 180.02562 * 1 2 3 28 28 H 1.08003 * 119.96266 * 359.97438 * 4 3 2 29 29 H 1.07997 * 120.03613 * 180.02562 * 5 4 3 30 30 H 1.09000 * 109.47459 * 300.00230 * 10 9 7 31 31 H 1.08998 * 109.47147 * 59.99996 * 10 9 7 32 32 H 1.09000 * 109.46790 * 300.00383 * 11 10 9 33 33 H 1.08998 * 109.47179 * 59.99760 * 11 10 9 34 34 H 0.97000 * 119.99814 * 180.02562 * 15 14 12 35 35 H 1.08003 * 120.03605 * 180.02562 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1901 2.6659 -0.0005 5 6 1.4941 3.9973 0.0000 6 6 2.8317 4.4080 0.0005 7 6 3.1632 5.8436 0.0005 8 8 4.3253 6.1988 0.0015 9 8 2.1775 6.7627 -0.0005 10 6 2.5778 8.1584 -0.0010 11 6 1.3318 9.0464 -0.0016 12 6 1.7472 10.4949 -0.0027 13 1 2.7951 10.7562 -0.0026 14 6 0.7895 11.4868 -0.0028 15 7 -0.4866 11.1687 -0.0024 16 14 1.3044 13.2824 -0.0050 17 1 2.7867 13.3723 -0.0070 18 1 0.7669 13.9500 -1.2177 19 1 0.7690 13.9524 1.2073 20 6 3.8535 3.4528 0.0000 21 6 3.5430 2.1224 0.0048 22 7 4.6236 1.1110 0.0110 23 8 5.7891 1.4649 0.0161 24 8 4.3475 -0.0753 0.0108 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.1578 2.3483 -0.0014 29 1 0.7030 4.7325 0.0000 30 1 3.1714 8.3666 0.8891 31 1 3.1723 8.3656 -0.8908 32 1 0.7379 8.8383 -0.8915 33 1 0.7376 8.8391 0.8884 34 1 -1.1604 11.8665 -0.0029 35 1 4.8869 3.7667 0.0008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021838397.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:35:58 Heat of formation + Delta-G solvation = -64.480796 kcal Electronic energy + Delta-G solvation = -22137.566769 eV Core-core repulsion = 18423.563150 eV Total energy + Delta-G solvation = -3714.003619 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.071 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.45087 -40.59767 -39.15610 -36.81142 -36.32775 -33.50163 -32.73513 -32.38098 -30.34473 -29.41540 -26.89870 -25.90520 -24.45215 -22.92754 -21.57790 -20.90532 -19.73443 -18.90220 -18.11719 -17.80589 -17.33038 -16.61470 -16.29251 -16.18128 -15.70021 -15.25197 -15.09413 -14.59074 -14.49045 -13.83400 -13.54671 -13.21984 -13.18466 -13.01279 -12.45159 -12.32647 -11.92579 -11.55909 -11.41467 -11.36375 -11.17068 -10.89110 -10.84292 -10.55409 -10.54078 -10.36179 -10.20869 -9.81311 -9.77488 -9.39502 -8.53859 -8.17540 -6.19895 -4.24412 -0.55538 0.00929 0.65328 1.00700 1.08265 1.71734 2.14772 2.77802 3.09039 3.21843 3.29794 3.34522 3.75040 4.23844 4.29206 4.33411 4.39265 4.52609 4.52802 4.60620 4.89569 5.11206 5.17056 5.17401 5.37751 5.54999 5.71691 5.91560 5.94439 6.11415 6.48427 6.69153 7.41175 7.42038 7.48693 7.73930 7.91281 8.12687 8.81185 9.40816 10.91595 Molecular weight = 311.07amu Principal moments of inertia in cm(-1) A = 0.025928 B = 0.002568 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.665415 B =10901.617614 C =11955.527390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 S 0.028 5.972 3 C -0.023 4.023 4 C -0.150 4.150 5 C 0.011 3.989 6 C -0.125 4.125 7 C 0.504 3.496 8 O -0.502 6.502 9 O -0.350 6.350 10 C 0.076 3.924 11 C 0.025 3.975 12 C -0.527 4.527 13 H 0.061 0.939 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.900 3.100 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.025 3.975 21 C -0.051 4.051 22 N 0.034 4.966 23 O -0.159 6.159 24 O -0.145 6.145 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.116 0.884 28 H 0.155 0.845 29 H 0.166 0.834 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.263 0.737 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.121 -22.872 -0.003 22.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.369 4.369 2 S 0.277 5.723 3 C -0.140 4.140 4 C -0.175 4.175 5 C -0.010 4.010 6 C -0.131 4.131 7 C 0.347 3.653 8 O -0.392 6.392 9 O -0.266 6.266 10 C 0.003 3.997 11 C -0.012 4.012 12 C -0.565 4.565 13 H 0.079 0.921 14 C -0.141 4.141 15 N -0.528 5.528 16 Si 0.727 3.273 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.208 1.208 20 C 0.004 3.996 21 C -0.142 4.142 22 N 0.549 4.451 23 O -0.372 6.372 24 O -0.357 6.357 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.134 0.866 28 H 0.173 0.827 29 H 0.184 0.816 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.141 -23.329 -0.006 23.330 hybrid contribution -0.330 2.016 -0.001 2.043 sum -0.190 -21.313 -0.007 21.314 Atomic orbital electron populations 1.24245 0.98497 1.07937 1.06247 1.87110 1.02790 0.96328 1.86107 1.22292 0.93650 1.01586 0.96459 1.21005 0.98724 0.92201 1.05579 1.21696 0.96439 0.96360 0.86462 1.19151 0.93402 0.91145 1.09356 1.20561 0.84252 0.86586 0.73893 1.90864 1.20741 1.82133 1.45500 1.86556 1.37670 1.19818 1.82562 1.23782 1.01623 0.72836 1.01412 1.19190 0.90900 0.92210 0.98930 1.20996 0.93355 0.89897 1.52298 0.92113 1.24978 0.94812 0.99576 0.94738 1.69972 0.99778 1.33335 1.49740 0.86407 0.78912 0.84205 0.77761 1.19535 1.20784 1.20780 1.20756 1.02501 0.88625 0.87673 1.19988 0.85809 0.88961 1.19474 1.43430 1.01969 1.01589 0.98152 1.94581 1.02745 1.86113 1.53799 1.94441 1.87815 1.00054 1.53410 0.89142 0.89140 0.86596 0.82705 0.81637 0.91889 0.91884 0.95279 0.95276 0.92697 0.81111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.82 9.14 101.05 0.92 0.10 16 2 S 0.03 0.23 19.37 -107.50 -2.08 -1.86 16 3 C -0.02 -0.22 6.13 -38.77 -0.24 -0.46 16 4 C -0.15 -1.17 9.30 -39.77 -0.37 -1.54 16 5 C 0.01 0.11 9.56 -39.56 -0.38 -0.27 16 6 C -0.12 -1.54 5.88 -104.95 -0.62 -2.16 16 7 C 0.50 8.12 7.88 34.43 0.27 8.40 16 8 O -0.50 -9.36 16.13 -19.28 -0.31 -9.67 16 9 O -0.35 -6.24 9.46 -40.69 -0.38 -6.63 16 10 C 0.08 1.56 5.41 37.16 0.20 1.76 16 11 C 0.02 0.61 5.35 -27.89 -0.15 0.46 16 12 C -0.53 -14.25 9.11 -34.44 -0.31 -14.56 16 13 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 16 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 C 0.02 0.30 9.05 -39.56 -0.36 -0.06 16 21 C -0.05 -0.60 6.83 -80.14 -0.55 -1.14 16 22 N 0.03 0.44 4.45 33.87 0.15 0.60 16 23 O -0.16 -2.25 18.42 -29.46 -0.54 -2.80 16 24 O -0.14 -1.90 15.79 -29.46 -0.47 -2.36 16 25 H 0.09 0.30 7.74 -51.92 -0.40 -0.10 16 26 H 0.09 0.30 7.74 -51.92 -0.40 -0.10 16 27 H 0.12 0.33 8.14 -51.92 -0.42 -0.10 16 28 H 0.16 0.73 5.86 -52.48 -0.31 0.42 16 29 H 0.17 1.41 7.60 -52.49 -0.40 1.01 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.17 2.10 7.16 -52.48 -0.38 1.72 16 LS Contribution 329.74 15.07 4.97 4.97 Total: -1.00 -31.08 329.74 -8.16 -39.24 By element: Atomic # 1 Polarization: -1.14 SS G_CDS: -3.54 Total: -4.68 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.67 Total: -7.90 kcal Atomic # 7 Polarization: -24.99 SS G_CDS: 0.89 Total: -24.10 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -1.70 Total: -21.45 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -2.08 Total: -1.86 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.08 -8.16 -39.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021838397.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.239 kcal (2) G-P(sol) polarization free energy of solvation -31.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds