Wall clock time and date at job start Tue Mar 31 2020 10:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47391 * 2 1 4 4 H 1.08989 * 109.47756 * 179.51450 * 3 2 1 5 5 C 1.50699 * 109.47007 * 299.51698 * 3 2 1 6 6 H 1.07999 * 120.00561 * 119.99618 * 5 3 2 7 7 C 1.37878 * 119.99982 * 299.99672 * 5 3 2 8 8 N 1.31514 * 120.00060 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00360 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46828 * 59.99909 * 9 7 5 11 11 H 1.48499 * 109.47241 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46883 * 300.00164 * 9 7 5 13 13 N 1.46906 * 109.46896 * 59.51012 * 3 2 1 14 14 C 1.46903 * 110.99346 * 85.85932 * 13 3 2 15 15 H 1.08995 * 109.47067 * 327.24917 * 14 13 3 16 16 C 1.52995 * 109.47328 * 87.25242 * 14 13 3 17 17 C 1.50707 * 109.46385 * 207.24798 * 14 13 3 18 18 C 1.38263 * 119.98954 * 140.00292 * 17 14 13 19 19 C 1.38218 * 120.02056 * 180.02562 * 18 17 14 20 20 C 1.38249 * 120.00841 * 359.96957 * 19 18 17 21 21 C 1.38305 * 119.98678 * 0.02562 * 20 19 18 22 22 Br 1.89100 * 120.00789 * 179.97438 * 21 20 19 23 23 C 1.38183 * 119.99781 * 319.72319 * 17 14 13 24 24 H 1.09001 * 109.47190 * 56.23936 * 1 2 3 25 25 H 1.09006 * 109.46746 * 296.24217 * 1 2 3 26 26 H 1.08997 * 109.46930 * 176.23916 * 1 2 3 27 27 H 1.09002 * 109.47355 * 120.00022 * 2 1 3 28 28 H 1.09002 * 109.47304 * 240.00313 * 2 1 3 29 29 H 0.97003 * 120.00788 * 180.02562 * 8 7 5 30 30 H 1.00903 * 110.99699 * 209.80566 * 13 3 2 31 31 H 1.08998 * 109.47147 * 299.99590 * 16 14 13 32 32 H 1.09004 * 109.47500 * 59.99609 * 16 14 13 33 33 H 1.09001 * 109.47433 * 179.97438 * 16 14 13 34 34 H 1.08005 * 119.99438 * 359.96950 * 18 17 14 35 35 H 1.08000 * 119.99997 * 180.02562 * 19 18 17 36 36 H 1.07994 * 120.00456 * 180.02562 * 20 19 18 37 37 H 1.08000 * 120.00795 * 359.97438 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1299 1.4426 0.0087 5 6 1.5476 2.1494 -1.2364 6 1 0.9259 3.0278 -1.1448 7 6 1.8906 1.6748 -2.4847 8 7 2.6472 0.6050 -2.5963 9 14 1.2808 2.5515 -4.0174 10 1 1.7763 3.9513 -4.0171 11 1 1.7848 1.8476 -5.2239 12 1 -0.2041 2.5521 -4.0294 13 7 1.5407 2.1384 1.1935 14 6 2.4263 1.9123 2.3436 15 1 2.8646 0.9167 2.2745 16 6 3.5402 2.9610 2.3436 17 6 1.6313 2.0239 3.6191 18 6 1.8706 1.1477 4.6615 19 6 1.1416 1.2491 5.8314 20 6 0.1731 2.2272 5.9599 21 6 -0.0666 3.1039 4.9174 22 35 -1.3917 4.4416 5.0923 23 6 0.6674 3.0055 3.7488 24 1 -0.3634 0.5711 -0.8544 25 1 -0.3633 0.4544 0.9218 26 1 -0.3633 -1.0254 -0.0674 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 2.8890 0.2712 -3.4744 30 1 1.4247 3.1247 1.0149 31 1 4.1151 2.8804 1.4211 32 1 3.1019 3.9567 2.4127 33 1 4.1970 2.7936 3.1972 34 1 2.6269 0.3831 4.5614 35 1 1.3291 0.5647 6.6456 36 1 -0.3963 2.3067 6.8741 37 1 0.4839 3.6930 2.9363 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038012419.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:07 Heat of formation + Delta-G solvation = 14.403770 kcal Electronic energy + Delta-G solvation = -18167.771988 eV Core-core repulsion = 15376.550762 eV Total energy + Delta-G solvation = -2791.221226 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.40450 -36.69028 -33.84664 -32.15271 -31.34839 -30.00689 -29.17451 -28.14992 -25.84734 -23.51912 -23.23569 -22.05960 -20.37948 -18.83661 -17.02316 -16.18879 -15.38557 -14.91417 -14.75083 -14.05656 -13.79897 -13.51346 -13.29841 -13.10999 -12.84423 -12.43697 -12.04688 -11.91938 -11.75931 -11.29445 -11.08571 -10.91799 -10.74601 -10.67463 -10.59818 -10.34166 -10.18454 -10.07126 -9.72860 -9.39282 -8.82213 -8.68325 -8.52776 -8.46788 -7.28530 -6.03452 -4.08952 1.24630 1.46308 1.71869 3.29984 3.34970 3.37759 3.76800 4.38906 4.85034 4.90051 5.13252 5.25719 5.31623 5.43871 5.58015 5.59285 5.70468 5.83669 5.95736 6.17708 6.22578 6.35728 6.42143 6.47991 6.56126 6.68315 6.78971 6.87960 6.95566 7.24330 7.30525 7.48210 7.73430 7.77535 7.82847 8.24126 8.35762 8.62606 8.99509 9.55967 11.02296 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.018669 B = 0.004082 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.419793 B = 6857.303066 C = 7613.939086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.103 4.103 3 C 0.218 3.782 4 H 0.003 0.997 5 C -0.513 4.513 6 H 0.058 0.942 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.677 5.677 14 C 0.117 3.883 15 H 0.083 0.917 16 C -0.172 4.172 17 C -0.043 4.043 18 C -0.106 4.106 19 C -0.117 4.117 20 C -0.106 4.106 21 C -0.090 4.090 22 Br -0.065 7.065 23 C -0.067 4.067 24 H 0.055 0.945 25 H 0.042 0.958 26 H 0.012 0.988 27 H 0.008 0.992 28 H 0.087 0.913 29 H 0.261 0.739 30 H 0.332 0.668 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.351 4.267 17.154 17.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.111 3.889 4 H 0.020 0.980 5 C -0.551 4.551 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.307 5.307 14 C 0.006 3.994 15 H 0.101 0.899 16 C -0.231 4.231 17 C -0.045 4.045 18 C -0.124 4.124 19 C -0.136 4.136 20 C -0.126 4.126 21 C -0.169 4.169 22 Br 0.021 6.979 23 C -0.087 4.087 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.031 0.969 27 H 0.027 0.973 28 H 0.105 0.895 29 H 0.071 0.929 30 H 0.150 0.850 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.201 4.140 17.215 18.198 hybrid contribution 0.692 0.608 -1.151 1.475 sum -3.509 4.748 16.064 17.114 Atomic orbital electron populations 1.21440 0.97515 0.97340 1.01362 1.21449 0.95044 0.98269 0.99348 1.19133 0.92984 0.91345 0.85462 0.97950 1.21130 1.31707 1.11990 0.90323 0.92388 1.24863 0.95006 0.94966 0.98872 1.69866 1.36489 1.22607 1.23768 0.86651 0.79265 0.79626 0.82413 1.20400 1.21372 1.20218 1.60811 1.48243 1.15941 1.05726 1.20484 0.90597 0.99202 0.89085 0.89920 1.22460 0.99307 0.99314 1.02044 1.20097 0.95473 0.93578 0.95361 1.21183 0.99486 0.98737 0.93041 1.21039 0.96283 0.98282 0.98018 1.20970 0.98759 0.95132 0.97780 1.21745 0.98894 0.98093 0.98166 1.96662 1.51993 1.51040 1.98235 1.20933 0.94099 0.98371 0.95268 0.92564 0.93929 0.96889 0.97308 0.89517 0.92906 0.85045 0.91634 0.92740 0.93052 0.85746 0.85636 0.85707 0.84912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.52 37.16 0.35 -2.32 16 2 C -0.10 -2.43 5.57 -26.73 -0.15 -2.58 16 3 C 0.22 5.15 2.11 -68.86 -0.15 5.00 16 4 H 0.00 0.07 7.28 -51.93 -0.38 -0.30 16 5 C -0.51 -13.29 7.29 -34.44 -0.25 -13.54 16 6 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -24.56 11.31 55.43 0.63 -23.94 16 9 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.68 -13.31 4.77 -102.17 -0.49 -13.79 16 14 C 0.12 1.95 2.59 -68.86 -0.18 1.77 16 15 H 0.08 1.46 7.04 -51.93 -0.37 1.09 16 16 C -0.17 -2.60 9.12 37.16 0.34 -2.27 16 17 C -0.04 -0.65 4.95 -104.63 -0.52 -1.17 16 18 C -0.11 -1.38 9.67 -39.58 -0.38 -1.76 16 19 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 20 C -0.11 -1.29 9.79 -39.55 -0.39 -1.68 16 21 C -0.09 -1.22 6.22 -39.52 -0.25 -1.47 16 22 Br -0.06 -0.80 33.70 -68.01 -2.29 -3.10 16 23 C -0.07 -0.99 9.06 -39.56 -0.36 -1.35 16 24 H 0.06 1.35 7.10 -51.93 -0.37 0.99 16 25 H 0.04 0.92 7.71 -51.93 -0.40 0.52 16 26 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.01 0.19 7.53 -51.93 -0.39 -0.21 16 28 H 0.09 2.29 6.06 -51.93 -0.31 1.98 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.33 6.45 7.37 -39.29 -0.29 6.16 16 31 H 0.06 1.09 7.61 -51.93 -0.40 0.70 16 32 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.12 1.43 8.04 -52.48 -0.42 1.01 16 35 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 36 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.13 2.02 7.33 -52.49 -0.38 1.64 16 LS Contribution 321.39 15.07 4.84 4.84 Total: -1.00 -26.70 321.39 -10.10 -36.80 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.36 Total: 4.84 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -2.42 Total: -21.47 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.14 Total: -37.73 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 35 Polarization: -0.80 SS G_CDS: -2.29 Total: -3.10 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -26.70 -10.10 -36.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038012419.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.204 kcal (2) G-P(sol) polarization free energy of solvation -26.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds