Wall clock time and date at job start Tue Mar 31 2020 10:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46963 * 2 1 4 4 H 1.09007 * 109.47029 * 305.63851 * 3 2 1 5 5 C 1.50702 * 109.47075 * 185.64184 * 3 2 1 6 6 H 1.07994 * 120.00034 * 239.99627 * 5 3 2 7 7 C 1.37882 * 119.99901 * 59.99915 * 5 3 2 8 8 N 1.31520 * 119.99855 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00116 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46850 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47368 * 119.99711 * 9 7 5 12 12 H 1.48499 * 109.47140 * 240.00220 * 9 7 5 13 13 N 1.46899 * 109.47451 * 65.64141 * 3 2 1 14 14 C 1.46893 * 111.00222 * 204.86990 * 13 3 2 15 15 H 1.09007 * 109.47582 * 326.86762 * 14 13 3 16 16 C 1.53000 * 109.47265 * 86.86394 * 14 13 3 17 17 C 1.50696 * 109.47427 * 206.86476 * 14 13 3 18 18 C 1.38264 * 119.99896 * 139.99796 * 17 14 13 19 19 C 1.38220 * 120.02289 * 180.02562 * 18 17 14 20 20 C 1.38238 * 120.00999 * 359.97438 * 19 18 17 21 21 C 1.38304 * 119.98792 * 0.02562 * 20 19 18 22 22 Br 1.89099 * 120.00734 * 179.97438 * 21 20 19 23 23 C 1.38200 * 119.99426 * 319.72497 * 17 14 13 24 24 H 1.08994 * 109.47479 * 294.22248 * 1 2 3 25 25 H 1.09009 * 109.46685 * 54.22065 * 1 2 3 26 26 H 1.09001 * 109.47294 * 174.21555 * 1 2 3 27 27 H 1.08996 * 109.46731 * 119.99374 * 2 1 3 28 28 H 1.08996 * 109.47584 * 239.99773 * 2 1 3 29 29 H 0.97003 * 119.99639 * 180.02562 * 8 7 5 30 30 H 1.00902 * 110.99686 * 328.82716 * 13 3 2 31 31 H 1.08996 * 109.47440 * 184.36372 * 16 14 13 32 32 H 1.09000 * 109.47394 * 304.36521 * 16 14 13 33 33 H 1.09001 * 109.46751 * 64.36745 * 16 14 13 34 34 H 1.08003 * 119.98582 * 359.97438 * 18 17 14 35 35 H 1.08003 * 119.99383 * 180.02562 * 19 18 17 36 36 H 1.07999 * 120.00506 * 180.02562 * 20 19 18 37 37 H 1.08002 * 120.00340 * 0.02562 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9846 -0.8352 5 6 3.5405 1.4448 -0.1397 6 1 4.1539 1.8865 0.6316 7 6 4.1302 0.8830 -1.2523 8 7 3.3831 0.3447 -2.1913 9 14 5.9902 0.8852 -1.4251 10 1 6.5965 1.5461 -0.2415 11 1 6.4805 -0.5134 -1.5170 12 1 6.3722 1.6255 -2.6545 13 7 1.6647 2.0946 1.2617 14 6 1.5871 3.5523 1.0981 15 1 2.3285 3.8761 0.3675 16 6 0.1889 3.9371 0.6103 17 6 1.8595 4.2215 2.4206 18 6 2.6258 5.3713 2.4686 19 6 2.8765 5.9852 3.6814 20 6 2.3606 5.4500 4.8469 21 6 1.5940 4.2999 4.7993 22 35 0.8886 3.5669 6.3934 23 6 1.3386 3.6889 3.5846 24 1 -0.3634 0.4216 0.9371 25 1 -0.3633 0.6009 -0.8338 26 1 -0.3634 -1.0224 -0.1036 27 1 1.8933 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.7980 -0.0509 -2.9738 30 1 0.7957 1.7237 1.6159 31 1 0.1544 5.0089 0.4149 32 1 -0.0387 3.3931 -0.3064 33 1 -0.5452 3.6835 1.3751 34 1 3.0294 5.7895 1.5583 35 1 3.4748 6.8836 3.7184 36 1 2.5561 5.9300 5.7944 37 1 0.7367 2.7930 3.5465 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038012420.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:08 Heat of formation + Delta-G solvation = 14.568702 kcal Electronic energy + Delta-G solvation = -18139.846442 eV Core-core repulsion = 15348.632369 eV Total energy + Delta-G solvation = -2791.214074 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.34925 -36.73406 -33.77136 -32.12497 -31.62394 -30.00092 -29.11418 -28.24831 -26.12097 -23.60059 -22.76026 -22.00252 -20.03666 -19.56969 -16.70845 -16.21246 -15.42383 -15.06068 -14.63966 -14.23883 -13.86035 -13.38213 -13.25275 -13.18850 -12.80294 -12.56788 -12.22962 -11.93092 -11.69742 -11.24722 -11.20064 -10.93641 -10.79421 -10.67639 -10.62201 -10.48504 -10.18192 -9.96782 -9.72593 -9.62924 -9.10678 -8.63506 -8.44509 -8.36493 -7.27794 -5.98048 -4.01907 1.30642 1.51793 1.74438 3.30473 3.38950 3.44435 3.82674 4.44234 4.89622 4.95743 5.16264 5.29902 5.35657 5.48125 5.61626 5.67354 5.72969 5.88686 5.97979 6.14089 6.15313 6.20372 6.29791 6.37795 6.43836 6.44872 6.53867 6.82277 6.88738 7.01039 7.07657 7.15782 7.48088 7.76333 7.91256 8.26134 8.37504 8.72004 9.06936 9.63411 11.07220 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.017294 B = 0.004149 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.705677 B = 6747.719146 C = 7204.489158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.220 3.780 4 H 0.005 0.995 5 C -0.492 4.492 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.678 5.678 14 C 0.123 3.877 15 H 0.095 0.905 16 C -0.174 4.174 17 C -0.041 4.041 18 C -0.103 4.103 19 C -0.117 4.117 20 C -0.107 4.107 21 C -0.090 4.090 22 Br -0.067 7.067 23 C -0.069 4.069 24 H 0.034 0.966 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.041 0.959 28 H 0.100 0.900 29 H 0.258 0.742 30 H 0.318 0.682 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.408 9.362 13.114 17.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.113 3.887 4 H 0.022 0.978 5 C -0.531 4.531 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.308 5.308 14 C 0.012 3.988 15 H 0.113 0.887 16 C -0.233 4.233 17 C -0.043 4.043 18 C -0.121 4.121 19 C -0.136 4.136 20 C -0.127 4.127 21 C -0.169 4.169 22 Br 0.018 6.982 23 C -0.089 4.089 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.118 0.882 29 H 0.068 0.932 30 H 0.136 0.864 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.001 8.982 13.770 17.501 hybrid contribution 0.385 0.135 -1.007 1.086 sum -5.616 9.116 12.763 16.660 Atomic orbital electron populations 1.21884 0.99607 0.99744 0.99477 1.21769 0.91209 1.00357 1.03130 1.19187 0.95448 0.89941 0.84146 0.97782 1.21254 0.91270 1.36403 1.04125 0.92026 1.24946 0.98002 0.95653 0.95882 1.69882 1.34553 1.39576 1.09605 0.86525 0.85941 0.77639 0.77823 1.19794 1.21142 1.21261 1.60788 1.35884 1.00945 1.33229 1.20434 0.96114 0.90257 0.92021 0.88712 1.22487 0.97770 1.01487 1.01518 1.20114 0.94880 0.93804 0.95509 1.21216 0.97488 0.95345 0.98100 1.21047 1.00245 1.00238 0.92063 1.20954 0.97772 0.95006 0.98958 1.21715 1.04325 0.99220 0.91681 1.96645 1.85044 1.84914 1.31549 1.20897 0.99061 0.98843 0.90105 0.94657 0.93894 0.94400 0.94036 0.88212 0.93163 0.86404 0.92791 0.91929 0.93052 0.85552 0.85622 0.85743 0.85177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.64 37.16 0.36 -2.44 16 2 C -0.13 -2.89 5.36 -26.73 -0.14 -3.03 16 3 C 0.22 5.21 1.83 -68.87 -0.13 5.08 16 4 H 0.00 0.12 7.24 -51.93 -0.38 -0.26 16 5 C -0.49 -13.18 8.50 -34.44 -0.29 -13.48 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -24.97 11.29 55.43 0.63 -24.34 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.68 -13.56 5.48 -102.17 -0.56 -14.11 16 14 C 0.12 2.15 2.59 -68.87 -0.18 1.98 16 15 H 0.09 1.86 7.48 -51.93 -0.39 1.48 16 16 C -0.17 -2.63 9.13 37.16 0.34 -2.29 16 17 C -0.04 -0.66 4.95 -104.63 -0.52 -1.18 16 18 C -0.10 -1.45 9.67 -39.58 -0.38 -1.84 16 19 C -0.12 -1.45 10.05 -39.59 -0.40 -1.85 16 20 C -0.11 -1.36 9.79 -39.56 -0.39 -1.75 16 21 C -0.09 -1.27 6.22 -39.52 -0.25 -1.52 16 22 Br -0.07 -0.84 33.70 -68.01 -2.29 -3.13 16 23 C -0.07 -1.06 9.07 -39.56 -0.36 -1.42 16 24 H 0.03 0.59 6.66 -51.93 -0.35 0.24 16 25 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.10 2.59 5.94 -51.93 -0.31 2.28 16 29 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.32 5.84 5.76 -39.29 -0.23 5.62 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 1.02 7.53 -51.93 -0.39 0.63 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.13 1.62 8.04 -52.48 -0.42 1.20 16 35 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 36 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.13 1.99 7.32 -52.49 -0.38 1.61 16 LS Contribution 322.30 15.07 4.86 4.86 Total: -1.00 -27.42 322.30 -10.16 -37.58 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -5.35 Total: 5.22 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -2.43 Total: -22.31 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.07 Total: -38.46 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 35 Polarization: -0.84 SS G_CDS: -2.29 Total: -3.13 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.42 -10.16 -37.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038012420.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.153 kcal (2) G-P(sol) polarization free energy of solvation -27.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds