Wall clock time and date at job start Tue Mar 31 2020 10:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46959 * 2 1 4 4 H 1.09003 * 109.46923 * 54.31507 * 3 2 1 5 5 C 1.50698 * 109.46910 * 174.31657 * 3 2 1 6 6 H 1.08004 * 119.99777 * 120.00290 * 5 3 2 7 7 C 1.37873 * 120.00344 * 299.99854 * 5 3 2 8 8 N 1.31511 * 120.00383 * 180.02562 * 7 5 3 9 9 Si 1.86804 * 119.99760 * 0.02562 * 7 5 3 10 10 H 1.48495 * 109.47039 * 90.00141 * 9 7 5 11 11 H 1.48504 * 109.47128 * 210.00337 * 9 7 5 12 12 H 1.48504 * 109.47145 * 329.99999 * 9 7 5 13 13 N 1.46903 * 109.47079 * 294.31794 * 3 2 1 14 14 C 1.46893 * 110.99976 * 155.61455 * 13 3 2 15 15 H 1.08996 * 109.47699 * 33.34648 * 14 13 3 16 16 C 1.53002 * 109.46825 * 273.34529 * 14 13 3 17 17 C 1.50703 * 109.47128 * 153.35369 * 14 13 3 18 18 C 1.38260 * 119.99721 * 39.71818 * 17 14 13 19 19 C 1.38216 * 120.01955 * 179.72662 * 18 17 14 20 20 C 1.38243 * 120.00861 * 0.55370 * 19 18 17 21 21 C 1.38296 * 119.98926 * 359.72481 * 20 19 18 22 22 Br 1.89100 * 120.00786 * 180.02562 * 21 20 19 23 23 C 1.38195 * 119.99096 * 219.99852 * 17 14 13 24 24 H 1.08999 * 109.47576 * 305.65323 * 1 2 3 25 25 H 1.09004 * 109.47375 * 65.65065 * 1 2 3 26 26 H 1.08998 * 109.47453 * 185.65007 * 1 2 3 27 27 H 1.09002 * 109.47347 * 239.99879 * 2 1 3 28 28 H 1.09004 * 109.46813 * 119.99238 * 2 1 3 29 29 H 0.96993 * 120.00131 * 179.97438 * 8 7 5 30 30 H 1.00900 * 111.00072 * 31.65315 * 13 3 2 31 31 H 1.09008 * 109.47130 * 64.92556 * 16 14 13 32 32 H 1.09002 * 109.47107 * 184.92001 * 16 14 13 33 33 H 1.08997 * 109.47309 * 304.92233 * 16 14 13 34 34 H 1.07997 * 119.98874 * 0.02562 * 18 17 14 35 35 H 1.08003 * 119.99322 * 180.27356 * 19 18 17 36 36 H 1.08005 * 120.00346 * 179.70169 * 20 19 18 37 37 H 1.07996 * 120.01140 * 0.02562 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5958 1.9849 0.8347 5 6 3.5403 1.4449 0.1407 6 1 4.1543 1.8864 -0.6304 7 6 4.1293 0.8834 1.2537 8 7 5.4386 0.8859 1.3768 9 14 3.0673 0.1192 2.5871 10 1 2.8500 -1.3181 2.2836 11 1 3.7499 0.2504 3.8994 12 1 1.7579 0.8178 2.6381 13 7 1.6654 2.0943 -1.2621 14 6 1.5989 3.5530 -1.1019 15 1 2.3474 3.8735 -0.3773 16 6 0.2066 3.9485 -0.6057 17 6 1.8668 4.2168 -2.4280 18 6 1.3436 3.6780 -3.5889 19 6 1.5843 4.2897 -4.8048 20 6 2.3578 5.4340 -4.8620 21 6 2.8861 5.9700 -3.7017 22 35 3.9437 7.5357 -3.7792 23 6 2.6402 5.3607 -2.4842 24 1 -0.3634 0.5990 0.8350 25 1 -0.3634 0.4237 -0.9363 26 1 -0.3634 -1.0226 0.1012 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5137 0.8901 29 1 5.8529 0.4912 2.1600 30 1 0.7928 1.7288 -1.6128 31 1 0.0469 3.5399 0.3922 32 1 0.1287 5.0351 -0.5701 33 1 -0.5475 3.5522 -1.2856 34 1 0.7427 2.7818 -3.5450 35 1 1.1717 3.8709 -5.7108 36 1 2.5499 5.9091 -5.8127 37 1 3.0529 5.7787 -1.5780 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038012421.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:09 Heat of formation + Delta-G solvation = 23.888728 kcal Electronic energy + Delta-G solvation = -18155.964012 eV Core-core repulsion = 15365.154085 eV Total energy + Delta-G solvation = -2790.809927 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.38997 -37.00775 -33.93860 -32.04335 -31.92323 -30.38186 -29.00086 -28.44115 -26.68500 -23.55175 -22.50840 -22.31717 -20.16859 -19.74937 -16.81082 -16.67709 -15.52035 -15.26043 -14.72433 -14.37243 -14.04803 -13.33900 -13.31569 -13.24830 -13.09974 -12.66701 -12.41201 -12.17534 -12.01858 -11.71613 -11.32949 -11.18354 -10.83618 -10.70165 -10.65778 -10.40761 -10.28978 -10.17500 -10.03801 -9.45433 -9.23047 -8.68447 -8.54360 -8.43571 -7.45329 -6.04627 -4.02017 1.31706 1.48627 1.73742 3.23976 3.33659 3.36725 3.81544 4.39006 4.76924 5.00775 5.07397 5.21802 5.26277 5.41243 5.54086 5.59458 5.65867 5.69213 5.78322 5.79316 5.91725 5.96926 6.12078 6.25352 6.31328 6.39466 6.42847 6.50830 6.59843 6.66892 6.72094 6.86357 7.02532 7.15335 7.69296 7.91155 8.19889 8.73120 9.08639 9.57940 11.08746 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.019730 B = 0.004043 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.843320 B = 6923.226818 C = 7799.350199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.135 4.135 3 C 0.191 3.809 4 H 0.003 0.997 5 C -0.497 4.497 6 H 0.081 0.919 7 C 0.067 3.933 8 N -0.900 5.900 9 Si 0.881 3.119 10 H -0.279 1.279 11 H -0.298 1.298 12 H -0.268 1.268 13 N -0.666 5.666 14 C 0.122 3.878 15 H 0.098 0.902 16 C -0.174 4.174 17 C -0.042 4.042 18 C -0.083 4.083 19 C -0.119 4.119 20 C -0.105 4.105 21 C -0.088 4.088 22 Br -0.065 7.065 23 C -0.086 4.086 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.263 0.737 30 H 0.319 0.681 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.647 10.611 -10.572 17.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.173 4.173 3 C 0.083 3.917 4 H 0.020 0.980 5 C -0.535 4.535 6 H 0.099 0.901 7 C -0.134 4.134 8 N -0.538 5.538 9 Si 0.712 3.288 10 H -0.206 1.206 11 H -0.225 1.225 12 H -0.193 1.193 13 N -0.296 5.296 14 C 0.011 3.989 15 H 0.116 0.884 16 C -0.233 4.233 17 C -0.044 4.044 18 C -0.101 4.101 19 C -0.138 4.138 20 C -0.125 4.125 21 C -0.167 4.167 22 Br 0.020 6.980 23 C -0.107 4.107 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.138 0.862 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.440 11.140 -10.713 17.609 hybrid contribution -1.403 -0.848 1.322 2.106 sum -9.843 10.292 -9.391 17.058 Atomic orbital electron populations 1.21915 0.98204 1.00582 1.00685 1.22116 0.92910 1.00430 1.01880 1.19642 0.96898 0.89231 0.85965 0.97987 1.21035 0.89093 1.37584 1.05827 0.90093 1.24959 0.94726 0.95979 0.97739 1.69884 1.08947 1.45761 1.29226 0.86967 0.80735 0.79808 0.81320 1.20619 1.22526 1.19329 1.60579 1.35680 1.01440 1.31904 1.20442 0.96348 0.89516 0.92553 0.88401 1.22498 0.97655 1.01667 1.01499 1.20001 0.95006 0.93310 0.96077 1.21066 0.98680 0.98709 0.91676 1.21097 0.99081 0.95503 0.98113 1.20967 0.98029 0.96750 0.96717 1.21646 1.02705 0.95876 0.96513 1.96655 1.68892 1.33326 1.99132 1.21009 0.97714 0.95504 0.96429 0.93575 0.93191 0.93630 0.91306 0.92778 0.92726 0.86226 0.92184 0.92495 0.92858 0.85576 0.85630 0.85692 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.64 37.16 0.36 -2.17 16 2 C -0.14 -2.78 5.02 -26.73 -0.13 -2.91 16 3 C 0.19 4.24 1.44 -68.86 -0.10 4.14 16 4 H 0.00 0.06 6.34 -51.93 -0.33 -0.27 16 5 C -0.50 -13.64 9.05 -34.44 -0.31 -13.95 16 6 H 0.08 2.50 8.06 -52.48 -0.42 2.07 16 7 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 8 N -0.90 -27.39 13.96 55.43 0.77 -26.61 16 9 Si 0.88 21.50 24.41 -169.99 -4.15 17.35 16 10 H -0.28 -6.65 6.82 56.52 0.39 -6.27 16 11 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.27 -6.22 6.53 56.52 0.37 -5.85 16 13 N -0.67 -12.52 5.46 -102.17 -0.56 -13.07 16 14 C 0.12 2.07 2.59 -68.87 -0.18 1.89 16 15 H 0.10 1.92 7.46 -51.93 -0.39 1.54 16 16 C -0.17 -2.44 9.15 37.16 0.34 -2.10 16 17 C -0.04 -0.66 4.96 -104.63 -0.52 -1.18 16 18 C -0.08 -1.15 9.32 -39.58 -0.37 -1.52 16 19 C -0.12 -1.46 10.05 -39.59 -0.40 -1.86 16 20 C -0.10 -1.33 9.79 -39.56 -0.39 -1.71 16 21 C -0.09 -1.24 6.22 -39.52 -0.25 -1.49 16 22 Br -0.07 -0.83 33.70 -68.01 -2.29 -3.13 16 23 C -0.09 -1.32 9.41 -39.56 -0.37 -1.70 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.70 6.65 -51.93 -0.35 0.35 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 28 H 0.05 1.21 3.21 -51.93 -0.17 1.04 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.32 5.20 5.68 -39.29 -0.22 4.98 16 31 H 0.06 0.88 7.60 -51.92 -0.39 0.49 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.67 8.04 -51.93 -0.42 0.25 16 34 H 0.13 1.61 7.29 -52.49 -0.38 1.23 16 35 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 36 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.13 1.96 8.04 -52.49 -0.42 1.54 16 LS Contribution 315.44 15.07 4.75 4.75 Total: -1.00 -29.48 315.44 -9.10 -38.58 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.21 Total: 4.88 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: -2.41 Total: -22.75 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.22 Total: -39.69 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.15 Total: 17.35 kcal Atomic # 35 Polarization: -0.83 SS G_CDS: -2.29 Total: -3.13 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.48 -9.10 -38.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038012421.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.470 kcal (2) G-P(sol) polarization free energy of solvation -29.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds