Wall clock time and date at job start Tue Mar 31 2020 10:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46959 * 2 1 4 4 H 1.09003 * 109.46923 * 54.31507 * 3 2 1 5 5 C 1.50698 * 109.46910 * 174.31657 * 3 2 1 6 6 H 1.08004 * 119.99777 * 120.00290 * 5 3 2 7 7 C 1.37873 * 120.00344 * 299.99854 * 5 3 2 8 8 N 1.31511 * 120.00383 * 180.02562 * 7 5 3 9 9 Si 1.86804 * 119.99760 * 0.02562 * 7 5 3 10 10 H 1.48495 * 109.47039 * 90.00141 * 9 7 5 11 11 H 1.48504 * 109.47128 * 210.00337 * 9 7 5 12 12 H 1.48504 * 109.47145 * 329.99999 * 9 7 5 13 13 N 1.46903 * 109.47079 * 294.31794 * 3 2 1 14 14 C 1.46893 * 110.99976 * 155.61455 * 13 3 2 15 15 H 1.08996 * 109.47699 * 33.34648 * 14 13 3 16 16 C 1.53002 * 109.46825 * 273.34529 * 14 13 3 17 17 C 1.50703 * 109.47128 * 153.35369 * 14 13 3 18 18 C 1.38260 * 119.99721 * 39.71818 * 17 14 13 19 19 C 1.38216 * 120.01955 * 179.72662 * 18 17 14 20 20 C 1.38243 * 120.00861 * 0.55370 * 19 18 17 21 21 C 1.38296 * 119.98926 * 359.72481 * 20 19 18 22 22 Br 1.89100 * 120.00786 * 180.02562 * 21 20 19 23 23 C 1.38195 * 119.99096 * 219.99852 * 17 14 13 24 24 H 1.08999 * 109.47576 * 305.65323 * 1 2 3 25 25 H 1.09004 * 109.47375 * 65.65065 * 1 2 3 26 26 H 1.08998 * 109.47453 * 185.65007 * 1 2 3 27 27 H 1.09002 * 109.47347 * 239.99879 * 2 1 3 28 28 H 1.09004 * 109.46813 * 119.99238 * 2 1 3 29 29 H 0.96993 * 120.00131 * 179.97438 * 8 7 5 30 30 H 1.00900 * 111.00072 * 31.65315 * 13 3 2 31 31 H 1.09008 * 109.47130 * 64.92556 * 16 14 13 32 32 H 1.09002 * 109.47107 * 184.92001 * 16 14 13 33 33 H 1.08997 * 109.47309 * 304.92233 * 16 14 13 34 34 H 1.07997 * 119.98874 * 0.02562 * 18 17 14 35 35 H 1.08003 * 119.99322 * 180.27356 * 19 18 17 36 36 H 1.08005 * 120.00346 * 179.70169 * 20 19 18 37 37 H 1.07996 * 120.01140 * 0.02562 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5958 1.9849 0.8347 5 6 3.5403 1.4449 0.1407 6 1 4.1543 1.8864 -0.6304 7 6 4.1293 0.8834 1.2537 8 7 5.4386 0.8859 1.3768 9 14 3.0673 0.1192 2.5871 10 1 2.8500 -1.3181 2.2836 11 1 3.7499 0.2504 3.8994 12 1 1.7579 0.8178 2.6381 13 7 1.6654 2.0943 -1.2621 14 6 1.5989 3.5530 -1.1019 15 1 2.3474 3.8735 -0.3773 16 6 0.2066 3.9485 -0.6057 17 6 1.8668 4.2168 -2.4280 18 6 1.3436 3.6780 -3.5889 19 6 1.5843 4.2897 -4.8048 20 6 2.3578 5.4340 -4.8620 21 6 2.8861 5.9700 -3.7017 22 35 3.9437 7.5357 -3.7792 23 6 2.6402 5.3607 -2.4842 24 1 -0.3634 0.5990 0.8350 25 1 -0.3634 0.4237 -0.9363 26 1 -0.3634 -1.0226 0.1012 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5137 0.8901 29 1 5.8529 0.4912 2.1600 30 1 0.7928 1.7288 -1.6128 31 1 0.0469 3.5399 0.3922 32 1 0.1287 5.0351 -0.5701 33 1 -0.5475 3.5522 -1.2856 34 1 0.7427 2.7818 -3.5450 35 1 1.1717 3.8709 -5.7108 36 1 2.5499 5.9091 -5.8127 37 1 3.0529 5.7787 -1.5780 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038012421.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:09 Heat of formation + Delta-G solvation = 6.110111 kcal Electronic energy + Delta-G solvation = -18156.734951 eV Core-core repulsion = 15365.154085 eV Total energy + Delta-G solvation = -2791.580866 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.54221 -38.50412 -35.43276 -34.00779 -33.03450 -31.60737 -30.21699 -29.67807 -28.45064 -24.88443 -24.07833 -23.41162 -21.70221 -21.19677 -18.79663 -17.86396 -17.07794 -16.54134 -16.24393 -15.76594 -15.49742 -14.87712 -14.56316 -14.41430 -14.37448 -14.22657 -13.70012 -13.65413 -13.41750 -13.02161 -12.81671 -12.49645 -12.43369 -12.20467 -11.95617 -11.81677 -11.68419 -11.63830 -11.25763 -11.22802 -11.14631 -10.66626 -9.78490 -9.53331 -9.00925 -8.25318 -6.26865 0.23221 0.40035 0.66825 1.29349 1.34423 1.44481 2.32509 2.72349 3.07974 3.44480 3.85461 3.97639 4.18482 4.23688 4.30593 4.37813 4.39625 4.45934 4.47472 4.55337 4.70235 4.81586 4.88678 5.03200 5.05687 5.10086 5.13860 5.20528 5.25452 5.30844 5.46085 5.49670 5.66066 5.75270 5.95909 6.11349 6.51970 6.80731 7.00143 7.37740 8.92327 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.019730 B = 0.004043 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.843320 B = 6923.226818 C = 7799.350199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 C 0.199 3.801 4 H -0.002 1.002 5 C -0.496 4.496 6 H 0.028 0.972 7 C 0.006 3.994 8 N -0.954 5.954 9 Si 0.949 3.051 10 H -0.266 1.266 11 H -0.303 1.303 12 H -0.245 1.245 13 N -0.671 5.671 14 C 0.124 3.876 15 H 0.056 0.944 16 C -0.164 4.164 17 C -0.060 4.060 18 C -0.089 4.089 19 C -0.111 4.111 20 C -0.103 4.103 21 C -0.099 4.099 22 Br -0.058 7.058 23 C -0.108 4.108 24 H 0.049 0.951 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.037 0.963 29 H 0.263 0.737 30 H 0.339 0.661 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.140 0.860 35 H 0.162 0.838 36 H 0.150 0.850 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.835 10.127 -11.792 20.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C 0.089 3.911 4 H 0.016 0.984 5 C -0.535 4.535 6 H 0.046 0.954 7 C -0.190 4.190 8 N -0.595 5.595 9 Si 0.776 3.224 10 H -0.192 1.192 11 H -0.231 1.231 12 H -0.169 1.169 13 N -0.304 5.304 14 C 0.014 3.986 15 H 0.074 0.926 16 C -0.223 4.223 17 C -0.062 4.062 18 C -0.107 4.107 19 C -0.129 4.129 20 C -0.123 4.123 21 C -0.178 4.178 22 Br 0.028 6.972 23 C -0.128 4.128 24 H 0.068 0.932 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.159 0.841 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.158 0.842 35 H 0.179 0.821 36 H 0.167 0.833 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.666 10.667 -11.959 19.821 hybrid contribution -0.318 -0.591 1.559 1.698 sum -11.984 10.076 -10.400 18.796 Atomic orbital electron populations 1.21845 0.94159 1.02390 1.02189 1.21998 0.96487 0.98076 1.00786 1.19376 0.93210 0.91093 0.87391 0.98429 1.21317 0.91944 1.36047 1.04200 0.95375 1.25832 0.95882 0.96820 1.00500 1.70063 1.11262 1.47844 1.30343 0.85861 0.79567 0.79584 0.77398 1.19201 1.23144 1.16906 1.60369 1.37152 1.02541 1.30294 1.20325 0.97090 0.88398 0.92812 0.92603 1.22383 0.96000 1.02477 1.01419 1.19932 0.96380 0.93801 0.96091 1.21269 0.98724 0.99148 0.91567 1.21489 0.97921 0.94753 0.98742 1.21335 0.97142 0.96748 0.97062 1.21807 1.03076 0.96348 0.96608 1.96649 1.68744 1.32753 1.99092 1.21014 0.98674 0.96317 0.96818 0.93223 0.90826 0.91474 0.91898 0.94477 0.92819 0.84091 0.92855 0.91449 0.90489 0.84209 0.82094 0.83263 0.86446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.18 9.64 71.98 0.69 -3.49 16 2 C -0.14 -5.29 5.02 30.59 0.15 -5.14 16 3 C 0.20 8.77 1.44 44.17 0.06 8.84 16 4 H 0.00 -0.08 6.34 -2.39 -0.02 -0.10 16 5 C -0.50 -28.41 9.05 25.60 0.23 -28.18 16 6 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 7 C 0.01 0.34 5.45 84.65 0.46 0.80 16 8 N -0.95 -60.81 13.96 21.45 0.30 -60.52 16 9 Si 0.95 44.85 24.41 68.60 1.67 46.52 16 10 H -0.27 -11.93 6.82 99.48 0.68 -11.25 16 11 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 12 H -0.25 -10.57 6.53 99.48 0.65 -9.92 16 13 N -0.67 -24.85 5.46 -477.16 -2.61 -27.46 16 14 C 0.12 4.24 2.59 44.17 0.11 4.36 16 15 H 0.06 2.34 7.46 -2.39 -0.02 2.33 16 16 C -0.16 -4.34 9.15 71.98 0.66 -3.68 16 17 C -0.06 -1.88 4.96 -19.87 -0.10 -1.98 16 18 C -0.09 -2.28 9.32 22.27 0.21 -2.07 16 19 C -0.11 -2.37 10.05 22.27 0.22 -2.15 16 20 C -0.10 -2.37 9.79 22.28 0.22 -2.16 16 21 C -0.10 -2.73 6.22 22.31 0.14 -2.60 16 22 Br -0.06 -1.45 33.70 -20.37 -0.69 -2.13 16 23 C -0.11 -3.39 9.41 22.29 0.21 -3.18 16 24 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.07 1.72 6.65 -2.38 -0.02 1.70 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.04 1.57 3.21 -2.38 -0.01 1.56 16 29 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 30 H 0.34 10.16 5.68 -89.69 -0.51 9.65 16 31 H 0.05 1.47 7.60 -2.38 -0.02 1.46 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.08 1.67 8.04 -2.39 -0.02 1.65 16 34 H 0.14 3.14 7.29 -2.91 -0.02 3.12 16 35 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 36 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 37 H 0.12 3.83 8.04 -2.91 -0.02 3.81 16 Total: -1.00 -67.59 315.44 2.43 -65.16 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.47 Total: 19.04 kcal Atomic # 6 Polarization: -43.89 SS G_CDS: 3.28 Total: -40.61 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -2.31 Total: -87.97 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.67 Total: 46.52 kcal Atomic # 35 Polarization: -1.45 SS G_CDS: -0.69 Total: -2.13 kcal Total: -67.59 2.43 -65.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038012421.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.270 kcal (2) G-P(sol) polarization free energy of solvation -67.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds