Wall clock time and date at job start Tue Mar 31 2020 10:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47324 * 2 1 4 4 H 1.09010 * 109.46896 * 305.14176 * 3 2 1 5 5 C 1.50696 * 109.47264 * 185.14006 * 3 2 1 6 6 H 1.08001 * 119.99858 * 239.99754 * 5 3 2 7 7 C 1.37873 * 120.00126 * 59.99936 * 5 3 2 8 8 N 1.31510 * 120.00018 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 120.00142 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47094 * 89.99474 * 9 7 5 11 11 H 1.48496 * 109.46937 * 209.99954 * 9 7 5 12 12 H 1.48503 * 109.46627 * 329.99548 * 9 7 5 13 13 N 1.46901 * 109.47075 * 65.13702 * 3 2 1 14 14 C 1.46902 * 110.99616 * 208.82449 * 13 3 2 15 15 H 1.08995 * 109.47683 * 31.76996 * 14 13 3 16 16 C 1.53005 * 109.46919 * 271.76675 * 14 13 3 17 17 C 1.50700 * 109.46920 * 151.76973 * 14 13 3 18 18 C 1.38268 * 119.99752 * 39.72446 * 17 14 13 19 19 C 1.38220 * 120.01840 * 179.72582 * 18 17 14 20 20 C 1.38234 * 120.01331 * 0.54496 * 19 18 17 21 21 C 1.38306 * 119.99012 * 359.72680 * 20 19 18 22 22 Br 1.89098 * 120.01326 * 180.02562 * 21 20 19 23 23 C 1.38197 * 119.99509 * 219.99598 * 17 14 13 24 24 H 1.09004 * 109.46992 * 304.66798 * 1 2 3 25 25 H 1.09000 * 109.47457 * 64.67026 * 1 2 3 26 26 H 1.09003 * 109.47222 * 184.67272 * 1 2 3 27 27 H 1.09002 * 109.47102 * 239.99646 * 2 1 3 28 28 H 1.08997 * 109.47013 * 119.99748 * 2 1 3 29 29 H 0.97007 * 120.00081 * 180.02562 * 8 7 5 30 30 H 1.00899 * 110.99693 * 84.87125 * 13 3 2 31 31 H 1.09001 * 109.47226 * 180.02562 * 16 14 13 32 32 H 1.09001 * 109.46903 * 300.00335 * 16 14 13 33 33 H 1.08996 * 109.47106 * 60.00529 * 16 14 13 34 34 H 1.08001 * 119.98565 * 0.02562 * 18 17 14 35 35 H 1.08001 * 119.98902 * 180.27153 * 19 18 17 36 36 H 1.07994 * 120.00784 * 179.70156 * 20 19 18 37 37 H 1.07999 * 120.00529 * 0.02562 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6034 1.9822 -0.8404 5 6 3.5416 1.4444 -0.1273 6 1 4.1487 1.8883 0.6478 7 6 4.1404 0.8794 -1.2332 8 7 3.4012 0.3383 -2.1768 9 14 6.0018 0.8811 -1.3907 10 1 6.5521 -0.3514 -0.7715 11 1 6.3770 0.9236 -2.8268 12 1 6.5559 2.0725 -0.6988 13 7 1.6542 2.0982 1.2566 14 6 1.4868 3.5451 1.0655 15 1 1.1310 3.7393 0.0537 16 6 2.8302 4.2463 1.2771 17 6 0.4839 4.0704 2.0601 18 6 0.4829 3.5941 3.3581 19 6 -0.4331 4.0797 4.2722 20 6 -1.3560 5.0336 3.8861 21 6 -1.3591 5.5063 2.5864 22 35 -2.6209 6.8118 2.0577 23 6 -0.4385 5.0241 1.6732 24 1 -0.3633 0.5846 0.8453 25 1 -0.3634 0.4397 -0.9288 26 1 -0.3634 -1.0243 0.0837 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8226 -0.0595 -2.9548 30 1 2.3243 1.9049 1.9859 31 1 2.7059 5.3199 1.1357 32 1 3.1859 4.0522 2.2889 33 1 3.5556 3.8664 0.5577 34 1 1.2013 2.8459 3.6591 35 1 -0.4306 3.7105 5.2872 36 1 -2.0748 5.4095 4.5991 37 1 -0.4408 5.3926 0.6580 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038012422.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:11 Heat of formation + Delta-G solvation = 12.141093 kcal Electronic energy + Delta-G solvation = -18087.004249 eV Core-core repulsion = 15295.684906 eV Total energy + Delta-G solvation = -2791.319343 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.36673 -36.64270 -33.74310 -32.03995 -31.61090 -30.34735 -28.98547 -28.06002 -26.12407 -23.31349 -22.69573 -22.26779 -19.94695 -19.53567 -16.85245 -16.44647 -15.39578 -15.02930 -14.71020 -14.08999 -13.74140 -13.37731 -13.28301 -13.06107 -12.70606 -12.49154 -12.01251 -11.90655 -11.40172 -11.27053 -11.15372 -11.02114 -10.75029 -10.70664 -10.65704 -10.48343 -10.26121 -10.14505 -9.60744 -9.51500 -9.06543 -8.71340 -8.45321 -8.41078 -7.35600 -6.03812 -4.16263 1.28660 1.45823 1.67722 3.23800 3.31726 3.33121 3.80131 4.35535 4.83157 4.98730 5.17243 5.22463 5.38927 5.48012 5.57504 5.68045 5.89655 5.92675 6.04063 6.21481 6.34498 6.38496 6.43069 6.51859 6.53708 6.70804 6.81946 6.84114 7.01728 7.10717 7.17499 7.41794 7.55404 7.74634 8.05572 8.07788 8.28247 8.59104 8.95642 9.51201 10.96646 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.024138 B = 0.003440 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.732467 B = 8138.027531 C = 8253.166682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C 0.217 3.783 4 H 0.032 0.968 5 C -0.544 4.544 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.680 5.680 14 C 0.127 3.873 15 H 0.080 0.920 16 C -0.174 4.174 17 C -0.044 4.044 18 C -0.081 4.081 19 C -0.119 4.119 20 C -0.107 4.107 21 C -0.089 4.089 22 Br -0.067 7.067 23 C -0.092 4.092 24 H 0.049 0.951 25 H 0.035 0.965 26 H 0.024 0.976 27 H 0.090 0.910 28 H 0.030 0.970 29 H 0.261 0.739 30 H 0.330 0.670 31 H 0.044 0.956 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.856 10.802 10.201 17.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C 0.109 3.891 4 H 0.050 0.950 5 C -0.583 4.583 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.309 5.309 14 C 0.016 3.984 15 H 0.098 0.902 16 C -0.232 4.232 17 C -0.046 4.046 18 C -0.100 4.100 19 C -0.137 4.137 20 C -0.127 4.127 21 C -0.169 4.169 22 Br 0.018 6.982 23 C -0.113 4.113 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.043 0.957 27 H 0.108 0.892 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.147 0.853 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.994 11.047 9.719 18.367 hybrid contribution 2.232 -0.062 -0.151 2.238 sum -8.762 10.984 9.568 16.999 Atomic orbital electron populations 1.21717 0.99065 0.98480 1.00355 1.21497 0.92045 0.99234 1.01627 1.19203 0.92996 0.91260 0.85606 0.95043 1.21873 0.92564 1.38313 1.05556 0.92496 1.24928 0.97772 0.94983 0.95779 1.69876 1.34792 1.38073 1.09418 0.86689 0.86203 0.78397 0.77245 1.20684 1.21257 1.20060 1.60932 1.52837 1.05994 1.11165 1.20377 0.91968 0.89942 0.96151 0.90152 1.22539 0.98648 0.99735 1.02293 1.20214 0.95434 0.93839 0.95076 1.21134 0.98115 0.98063 0.92657 1.21127 0.95669 0.97141 0.99812 1.20958 0.99573 0.97949 0.94175 1.21647 0.98515 0.99952 0.96737 1.96650 1.56432 1.53169 1.91961 1.20991 0.94129 0.97099 0.99044 0.93145 0.94624 0.95711 0.89192 0.95130 0.92866 0.85311 0.93718 0.93309 0.89818 0.85293 0.85634 0.85751 0.85420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.86 37.16 0.37 -2.46 16 2 C -0.11 -2.44 5.45 -26.73 -0.15 -2.58 16 3 C 0.22 5.03 1.99 -68.87 -0.14 4.89 16 4 H 0.03 0.82 7.32 -51.92 -0.38 0.44 16 5 C -0.54 -13.66 7.24 -34.44 -0.25 -13.91 16 6 H 0.06 1.40 6.82 -52.49 -0.36 1.05 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.15 11.29 55.43 0.63 -23.52 16 9 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 N -0.68 -13.05 4.83 -102.17 -0.49 -13.55 16 14 C 0.13 2.19 2.81 -68.86 -0.19 1.99 16 15 H 0.08 1.51 7.19 -51.93 -0.37 1.13 16 16 C -0.17 -2.87 8.84 37.16 0.33 -2.54 16 17 C -0.04 -0.67 4.96 -104.63 -0.52 -1.19 16 18 C -0.08 -1.12 9.33 -39.58 -0.37 -1.49 16 19 C -0.12 -1.43 10.05 -39.59 -0.40 -1.83 16 20 C -0.11 -1.30 9.79 -39.56 -0.39 -1.68 16 21 C -0.09 -1.19 6.22 -39.51 -0.25 -1.44 16 22 Br -0.07 -0.80 33.70 -68.01 -2.29 -3.09 16 23 C -0.09 -1.33 9.41 -39.55 -0.37 -1.71 16 24 H 0.05 1.00 7.63 -51.93 -0.40 0.60 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 2.34 5.95 -51.93 -0.31 2.03 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.33 6.22 7.52 -39.29 -0.30 5.92 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 33 H 0.08 1.60 6.19 -51.93 -0.32 1.28 16 34 H 0.13 1.72 7.35 -52.49 -0.39 1.34 16 35 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.13 1.77 8.04 -52.49 -0.42 1.35 16 LS Contribution 321.03 15.07 4.84 4.84 Total: -1.00 -25.83 321.03 -10.09 -35.92 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -5.33 Total: 6.29 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -2.42 Total: -22.25 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.13 Total: -37.07 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 35 Polarization: -0.80 SS G_CDS: -2.29 Total: -3.09 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -25.83 -10.09 -35.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038012422.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.064 kcal (2) G-P(sol) polarization free energy of solvation -25.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds