Wall clock time and date at job start Tue Mar 31 2020 10:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 5 5 C 1.46901 * 110.99870 * 85.00132 * 4 2 1 6 6 C 1.53004 * 109.46916 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.46700 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46820 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00070 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00019 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00228 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 120.00068 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46685 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46910 * 120.00333 * 12 10 8 15 15 H 1.48502 * 109.47120 * 240.00671 * 12 10 8 16 16 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 17 17 C 1.38242 * 119.98655 * 79.72386 * 16 2 1 18 18 C 1.38218 * 120.00593 * 179.76383 * 17 16 2 19 19 C 1.38321 * 119.98948 * 0.51348 * 18 17 16 20 20 Br 1.89106 * 120.01163 * 179.72123 * 19 18 17 21 21 C 1.38322 * 119.98038 * 359.74015 * 19 18 17 22 22 C 1.38214 * 119.99038 * 0.02562 * 21 19 18 23 23 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 25 25 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 26 26 H 1.00901 * 110.99869 * 321.04843 * 4 2 1 27 27 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 28 28 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 29 29 H 1.08995 * 109.46615 * 299.99641 * 6 5 4 30 30 H 1.08996 * 109.46939 * 60.00272 * 6 5 4 31 31 H 1.08993 * 109.47740 * 299.99810 * 7 6 5 32 32 H 1.09005 * 109.47573 * 59.99976 * 7 6 5 33 33 H 0.97002 * 120.00555 * 179.97438 * 11 10 8 34 34 H 1.07998 * 119.99415 * 0.02562 * 17 16 2 35 35 H 1.08002 * 120.00646 * 180.23465 * 18 17 16 36 36 H 1.08004 * 120.00468 * 179.97438 * 21 19 18 37 37 H 1.08005 * 119.99581 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5951 -0.5332 -3.5745 7 6 2.6599 0.4198 -4.7697 8 6 3.1653 -0.3244 -5.9787 9 1 3.4149 -1.3724 -5.9023 10 6 3.3081 0.3323 -7.1826 11 7 3.0037 1.6084 -7.2758 12 14 3.9340 -0.5904 -8.6815 13 1 4.2026 -2.0043 -8.3156 14 1 2.9092 -0.5434 -9.7552 15 1 5.1871 0.0429 -9.1650 16 6 2.0324 -0.7104 1.2305 17 6 2.0613 -2.0920 1.2672 18 6 2.5265 -2.7440 2.3937 19 6 2.9532 -2.0139 3.4883 20 35 3.5824 -2.9053 5.0328 21 6 2.9191 -0.6315 3.4530 22 6 2.4583 0.0196 2.3243 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.4495 -1.4979 -1.4101 27 1 1.0871 0.6163 -2.5526 28 1 2.7589 1.0462 -2.1182 29 1 3.5904 -0.9271 -3.3691 30 1 1.9183 -1.3564 -3.8030 31 1 1.6645 0.8136 -4.9749 32 1 3.3364 1.2435 -4.5415 33 1 3.1045 2.0705 -8.1226 34 1 1.7243 -2.6620 0.4140 35 1 2.5526 -3.8233 2.4209 36 1 3.2518 -0.0611 4.3077 37 1 2.4320 1.0990 2.2965 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042224812.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:28 Heat of formation + Delta-G solvation = 4.235993 kcal Electronic energy + Delta-G solvation = -16974.982809 eV Core-core repulsion = 14183.320676 eV Total energy + Delta-G solvation = -2791.662133 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.77058 -37.00933 -34.15503 -32.62296 -31.49600 -31.23562 -29.63602 -28.38870 -25.95374 -23.61268 -23.14870 -22.12637 -20.68817 -20.02616 -17.01892 -16.31717 -15.73858 -15.43079 -15.14837 -14.54216 -14.30257 -14.15924 -13.65435 -13.59261 -13.26132 -12.84948 -12.44964 -12.20333 -11.90149 -11.72219 -11.45785 -11.22548 -11.01981 -10.90099 -10.84785 -10.59747 -10.50377 -10.46284 -9.72125 -9.36165 -9.19056 -9.05814 -8.72753 -8.34900 -8.23645 -5.99838 -4.01809 0.92059 1.14899 1.42491 3.31321 3.38758 3.42930 3.43688 4.24304 4.47328 4.60164 4.67080 4.71422 5.01044 5.10627 5.21404 5.25377 5.36167 5.47588 5.57285 5.60493 5.76609 5.80829 5.85901 5.96218 6.01317 6.12454 6.29428 6.37993 6.63720 6.70143 6.75252 7.12159 7.27455 7.54176 7.68430 7.82836 8.00579 8.43861 9.05657 9.62336 11.11641 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.030540 B = 0.002180 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.620509 B =12840.438196 C =13389.945386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.116 3.884 3 H 0.088 0.912 4 N -0.683 5.683 5 C 0.059 3.941 6 C -0.107 4.107 7 C 0.022 3.978 8 C -0.518 4.518 9 H 0.056 0.944 10 C 0.055 3.945 11 N -0.897 5.897 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.043 4.043 17 C -0.092 4.092 18 C -0.091 4.091 19 C -0.097 4.097 20 Br -0.062 7.062 21 C -0.091 4.091 22 C -0.112 4.112 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.338 0.662 27 H 0.027 0.973 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.013 0.987 32 H 0.016 0.984 33 H 0.259 0.741 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.287 -6.601 27.065 28.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.005 3.995 3 H 0.107 0.893 4 N -0.313 5.313 5 C -0.069 4.069 6 C -0.145 4.145 7 C -0.016 4.016 8 C -0.556 4.556 9 H 0.074 0.926 10 C -0.146 4.146 11 N -0.536 5.536 12 Si 0.719 3.281 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.044 4.044 17 C -0.112 4.112 18 C -0.111 4.111 19 C -0.176 4.176 20 Br 0.023 6.977 21 C -0.111 4.111 22 C -0.132 4.132 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.157 0.843 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.032 0.968 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.386 -6.708 27.670 28.571 hybrid contribution -0.702 -0.096 -1.449 1.613 sum -3.089 -6.804 26.221 27.265 Atomic orbital electron populations 1.22484 0.96085 1.02477 1.02598 1.20517 0.92769 0.97646 0.88526 0.89344 1.60675 1.56655 1.10099 1.03892 1.22173 0.99229 0.95400 0.90069 1.21621 1.00124 0.98930 0.93809 1.19067 0.97015 0.94341 0.91160 1.21294 1.43383 0.96446 0.94493 0.92622 1.25035 0.95644 0.94891 0.98998 1.69974 1.49024 1.09014 1.25618 0.86544 0.78512 0.80081 0.82925 1.19713 1.21060 1.21005 1.20036 0.95909 0.93872 0.94592 1.20969 0.98875 0.94088 0.97227 1.21104 0.97858 1.00092 0.92068 1.21725 1.07051 0.94970 0.93892 1.96691 1.87559 1.78143 1.35287 1.21026 0.99036 0.92263 0.98793 1.21029 0.99345 1.00154 0.92651 0.92234 0.92040 0.91754 0.84330 0.95513 0.91397 0.92528 0.93657 0.96817 0.96584 0.93092 0.85061 0.85208 0.85250 0.85249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 9.14 37.16 0.34 -1.40 16 2 C 0.12 1.30 2.79 -68.86 -0.19 1.11 16 3 H 0.09 1.01 7.66 -51.93 -0.40 0.61 16 4 N -0.68 -9.22 5.71 -107.94 -0.62 -9.84 16 5 C 0.06 0.98 5.48 -3.82 -0.02 0.96 16 6 C -0.11 -2.17 5.41 -26.73 -0.14 -2.31 16 7 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 8 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 9 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 10 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 11 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 12 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 16 C -0.04 -0.46 4.95 -104.62 -0.52 -0.98 16 17 C -0.09 -0.97 9.32 -39.59 -0.37 -1.34 16 18 C -0.09 -0.93 9.79 -39.56 -0.39 -1.31 16 19 C -0.10 -0.99 6.22 -39.52 -0.25 -1.24 16 20 Br -0.06 -0.58 33.70 -68.01 -2.29 -2.87 16 21 C -0.09 -0.88 9.79 -39.56 -0.39 -1.27 16 22 C -0.11 -1.11 9.67 -39.59 -0.38 -1.49 16 23 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 26 H 0.34 4.22 7.82 -39.29 -0.31 3.91 16 27 H 0.03 0.43 7.44 -51.93 -0.39 0.05 16 28 H 0.07 1.15 8.05 -51.93 -0.42 0.73 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 34 H 0.13 1.27 7.25 -52.49 -0.38 0.89 16 35 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.13 1.04 8.04 -52.48 -0.42 0.62 16 LS Contribution 330.39 15.07 4.98 4.98 Total: -1.00 -30.04 330.39 -10.69 -40.73 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -5.62 Total: -1.00 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -2.86 Total: -22.42 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.12 Total: -36.14 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 35 Polarization: -0.58 SS G_CDS: -2.29 Total: -2.87 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.04 -10.69 -40.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042224812.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.968 kcal (2) G-P(sol) polarization free energy of solvation -30.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds