Wall clock time and date at job start Tue Mar 31 2020 10:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 5 5 C 1.46901 * 110.99870 * 85.00132 * 4 2 1 6 6 C 1.53004 * 109.46916 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.46700 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46820 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00070 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00019 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00228 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 120.00068 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46685 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46910 * 120.00333 * 12 10 8 15 15 H 1.48502 * 109.47120 * 240.00671 * 12 10 8 16 16 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 17 17 C 1.38242 * 119.98655 * 79.72386 * 16 2 1 18 18 C 1.38218 * 120.00593 * 179.76383 * 17 16 2 19 19 C 1.38321 * 119.98948 * 0.51348 * 18 17 16 20 20 Br 1.89106 * 120.01163 * 179.72123 * 19 18 17 21 21 C 1.38322 * 119.98038 * 359.74015 * 19 18 17 22 22 C 1.38214 * 119.99038 * 0.02562 * 21 19 18 23 23 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 25 25 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 26 26 H 1.00901 * 110.99869 * 321.04843 * 4 2 1 27 27 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 28 28 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 29 29 H 1.08995 * 109.46615 * 299.99641 * 6 5 4 30 30 H 1.08996 * 109.46939 * 60.00272 * 6 5 4 31 31 H 1.08993 * 109.47740 * 299.99810 * 7 6 5 32 32 H 1.09005 * 109.47573 * 59.99976 * 7 6 5 33 33 H 0.97002 * 120.00555 * 179.97438 * 11 10 8 34 34 H 1.07998 * 119.99415 * 0.02562 * 17 16 2 35 35 H 1.08002 * 120.00646 * 180.23465 * 18 17 16 36 36 H 1.08004 * 120.00468 * 179.97438 * 21 19 18 37 37 H 1.08005 * 119.99581 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5951 -0.5332 -3.5745 7 6 2.6599 0.4198 -4.7697 8 6 3.1653 -0.3244 -5.9787 9 1 3.4149 -1.3724 -5.9023 10 6 3.3081 0.3323 -7.1826 11 7 3.0037 1.6084 -7.2758 12 14 3.9340 -0.5904 -8.6815 13 1 4.2026 -2.0043 -8.3156 14 1 2.9092 -0.5434 -9.7552 15 1 5.1871 0.0429 -9.1650 16 6 2.0324 -0.7104 1.2305 17 6 2.0613 -2.0920 1.2672 18 6 2.5265 -2.7440 2.3937 19 6 2.9532 -2.0139 3.4883 20 35 3.5824 -2.9053 5.0328 21 6 2.9191 -0.6315 3.4530 22 6 2.4583 0.0196 2.3243 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.4495 -1.4979 -1.4101 27 1 1.0871 0.6163 -2.5526 28 1 2.7589 1.0462 -2.1182 29 1 3.5904 -0.9271 -3.3691 30 1 1.9183 -1.3564 -3.8030 31 1 1.6645 0.8136 -4.9749 32 1 3.3364 1.2435 -4.5415 33 1 3.1045 2.0705 -8.1226 34 1 1.7243 -2.6620 0.4140 35 1 2.5526 -3.8233 2.4209 36 1 3.2518 -0.0611 4.3077 37 1 2.4320 1.0990 2.2965 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042224812.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:27 Heat of formation + Delta-G solvation = -11.670134 kcal Electronic energy + Delta-G solvation = -16975.672551 eV Core-core repulsion = 14183.320676 eV Total energy + Delta-G solvation = -2792.351875 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.56897 -38.10111 -35.86801 -34.14961 -32.68690 -31.98464 -30.92167 -29.24415 -27.68236 -24.79683 -24.17298 -23.33417 -22.00940 -21.26821 -18.51512 -17.77826 -16.75333 -16.49625 -16.41252 -16.15221 -15.40923 -15.22649 -14.58322 -14.45076 -14.34818 -14.25138 -13.73236 -13.57670 -13.32327 -13.03331 -12.70336 -12.56522 -12.45634 -12.33815 -12.00668 -11.84080 -11.66386 -11.52050 -11.35134 -11.23687 -11.05980 -10.55304 -9.94284 -9.54650 -9.31216 -8.19967 -6.30583 0.13820 0.39672 0.67356 1.40202 1.40627 1.54054 2.41218 2.64886 3.13330 3.22455 3.79703 3.84854 4.00437 4.15885 4.24375 4.32128 4.42684 4.47672 4.53285 4.68156 4.75645 4.80066 4.85306 5.01053 5.06171 5.13371 5.19443 5.25470 5.26633 5.33132 5.52775 5.60944 5.77100 5.87319 5.88262 6.09170 6.28269 6.48485 6.86874 7.38713 8.92085 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.030540 B = 0.002180 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.620509 B =12840.438196 C =13389.945386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.119 3.881 3 H 0.086 0.914 4 N -0.684 5.684 5 C 0.074 3.926 6 C -0.092 4.092 7 C 0.025 3.975 8 C -0.541 4.541 9 H 0.059 0.941 10 C -0.002 4.002 11 N -0.934 5.934 12 Si 0.964 3.036 13 H -0.262 1.262 14 H -0.277 1.277 15 H -0.278 1.278 16 C -0.054 4.054 17 C -0.101 4.101 18 C -0.098 4.098 19 C -0.107 4.107 20 Br -0.056 7.056 21 C -0.095 4.095 22 C -0.116 4.116 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.346 0.654 27 H 0.029 0.971 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.051 0.949 31 H -0.008 1.008 32 H -0.009 1.009 33 H 0.263 0.737 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.260 -7.561 27.719 28.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.009 3.991 3 H 0.104 0.896 4 N -0.315 5.315 5 C -0.054 4.054 6 C -0.130 4.130 7 C -0.013 4.013 8 C -0.579 4.579 9 H 0.077 0.923 10 C -0.200 4.200 11 N -0.574 5.574 12 Si 0.789 3.211 13 H -0.186 1.186 14 H -0.203 1.203 15 H -0.204 1.204 16 C -0.055 4.055 17 C -0.120 4.120 18 C -0.118 4.118 19 C -0.187 4.187 20 Br 0.029 6.971 21 C -0.114 4.114 22 C -0.135 4.135 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.074 0.926 26 H 0.165 0.835 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.011 0.989 32 H 0.009 0.991 33 H 0.072 0.928 34 H 0.154 0.846 35 H 0.159 0.841 36 H 0.163 0.837 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.365 -7.682 28.346 29.464 hybrid contribution -0.708 0.211 -1.583 1.748 sum -3.074 -7.471 26.763 27.955 Atomic orbital electron populations 1.22417 0.94893 1.02950 1.02801 1.20512 0.93707 0.97321 0.87576 0.89562 1.60565 1.57599 1.09914 1.03451 1.21835 0.98867 0.95072 0.89673 1.21365 1.00203 0.98059 0.93399 1.18973 0.94841 0.94508 0.92963 1.21737 1.43562 0.96865 0.95763 0.92315 1.25986 0.95731 0.95788 1.02447 1.70098 1.49979 1.10679 1.26684 0.85408 0.77990 0.79027 0.78685 1.18623 1.20298 1.20404 1.20041 0.96716 0.94091 0.94643 1.21088 0.99116 0.94174 0.97626 1.21271 0.97733 1.00782 0.91973 1.21914 1.07099 0.95433 0.94220 1.96693 1.87477 1.78063 1.34841 1.21254 0.98654 0.92268 0.99272 1.21245 0.98809 1.01077 0.92364 0.91643 0.90742 0.92592 0.83524 0.95327 0.92080 0.93141 0.93015 0.98944 0.99109 0.92786 0.84590 0.84137 0.83699 0.83637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 9.14 71.98 0.66 -2.44 16 2 C 0.12 2.50 2.79 44.17 0.12 2.62 16 3 H 0.09 1.86 7.66 -2.39 -0.02 1.84 16 4 N -0.68 -17.71 5.71 -495.42 -2.83 -20.54 16 5 C 0.07 2.42 5.48 86.30 0.47 2.89 16 6 C -0.09 -3.74 5.41 30.59 0.17 -3.58 16 7 C 0.02 1.31 4.97 29.85 0.15 1.46 16 8 C -0.54 -31.06 9.11 25.60 0.23 -30.83 16 9 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 10 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 11 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 12 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 13 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 14 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 16 C -0.05 -1.08 4.95 -19.86 -0.10 -1.18 16 17 C -0.10 -1.99 9.32 22.27 0.21 -1.78 16 18 C -0.10 -1.85 9.79 22.28 0.22 -1.63 16 19 C -0.11 -2.03 6.22 22.31 0.14 -1.89 16 20 Br -0.06 -0.96 33.70 -20.37 -0.69 -1.65 16 21 C -0.09 -1.67 9.79 22.28 0.22 -1.45 16 22 C -0.12 -2.08 9.67 22.26 0.22 -1.86 16 23 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 24 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.06 1.11 7.45 -2.39 -0.02 1.09 16 26 H 0.35 8.14 7.82 -89.69 -0.70 7.44 16 27 H 0.03 0.92 7.44 -2.39 -0.02 0.90 16 28 H 0.06 2.07 8.05 -2.39 -0.02 2.05 16 29 H 0.05 2.09 8.14 -2.39 -0.02 2.08 16 30 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 31 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 32 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 33 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 34 H 0.14 2.46 7.25 -2.91 -0.02 2.43 16 35 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 37 H 0.15 2.05 8.04 -2.91 -0.02 2.03 16 Total: -1.00 -63.71 330.39 2.30 -61.41 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.35 Total: 10.38 kcal Atomic # 6 Polarization: -42.49 SS G_CDS: 3.16 Total: -39.33 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -2.54 Total: -77.33 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 35 Polarization: -0.96 SS G_CDS: -0.69 Total: -1.65 kcal Total: -63.71 2.30 -61.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042224812.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.740 kcal (2) G-P(sol) polarization free energy of solvation -63.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds