Wall clock time and date at job start Tue Mar 31 2020 10:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46869 * 2 1 4 4 N 1.46905 * 109.47191 * 119.99949 * 2 1 3 5 5 C 1.46902 * 110.99800 * 274.99934 * 4 2 1 6 6 C 1.53006 * 109.46626 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46957 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99816 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00340 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99773 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00296 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47118 * 89.99310 * 12 10 8 14 14 H 1.48494 * 109.47201 * 209.99478 * 12 10 8 15 15 H 1.48498 * 109.47011 * 329.99452 * 12 10 8 16 16 C 1.50695 * 109.47212 * 240.00355 * 2 1 3 17 17 C 1.38246 * 119.98780 * 279.72102 * 16 2 1 18 18 C 1.38216 * 120.01071 * 179.76885 * 17 16 2 19 19 C 1.38327 * 119.98908 * 0.50747 * 18 17 16 20 20 Br 1.89101 * 120.01126 * 179.72825 * 19 18 17 21 21 C 1.38327 * 119.98006 * 359.74778 * 19 18 17 22 22 C 1.38225 * 119.98785 * 359.97438 * 21 19 18 23 23 H 1.09001 * 109.47129 * 59.99933 * 1 2 3 24 24 H 1.08996 * 109.47051 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46808 * 299.99830 * 1 2 3 26 26 H 1.00898 * 110.99743 * 151.04984 * 4 2 1 27 27 H 1.09000 * 109.47263 * 60.00269 * 5 4 2 28 28 H 1.09001 * 109.47582 * 299.99548 * 5 4 2 29 29 H 1.08993 * 109.46955 * 300.00347 * 6 5 4 30 30 H 1.09000 * 109.47050 * 60.00176 * 6 5 4 31 31 H 1.08993 * 109.47839 * 299.99931 * 7 6 5 32 32 H 1.09000 * 109.47160 * 60.00369 * 7 6 5 33 33 H 0.97000 * 120.00540 * 180.02562 * 11 10 8 34 34 H 1.07999 * 119.99427 * 0.02624 * 17 16 2 35 35 H 1.08001 * 120.00792 * 180.28123 * 18 17 16 36 36 H 1.07998 * 120.00531 * 179.97438 * 21 19 18 37 37 H 1.07996 * 119.99235 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5951 -0.5332 3.5745 7 6 2.6611 0.4201 4.7694 8 6 3.1666 -0.3242 5.9784 9 1 3.4162 -1.3722 5.9020 10 6 3.3104 0.3327 7.1821 11 7 3.0069 1.6090 7.2750 12 14 3.9377 -0.5896 8.6805 13 1 5.4186 -0.4955 8.7356 14 1 3.3576 0.0094 9.9092 15 1 3.5354 -2.0161 8.5879 16 6 2.0323 -0.7103 -1.2305 17 6 2.0721 -2.0918 -1.2630 18 6 2.5282 -2.7439 -2.3931 19 6 2.9549 -2.0137 -3.4877 20 35 3.5863 -2.9051 -5.0313 21 6 2.9200 -0.6314 -3.4528 22 6 2.4582 0.0198 -2.3243 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.9174 -1.1204 1.0287 27 1 1.0871 0.6163 2.5526 28 1 2.7589 1.0462 2.1183 29 1 1.9184 -1.3565 3.8029 30 1 3.5904 -0.9273 3.3691 31 1 3.3380 1.2431 4.5407 32 1 1.6660 0.8145 4.9749 33 1 3.1084 2.0713 8.1216 34 1 1.7427 -2.6617 -0.4068 35 1 2.5550 -3.8232 -2.4201 36 1 3.2534 -0.0609 -4.3071 37 1 2.4305 1.0990 -2.2971 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042224814.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:29 Heat of formation + Delta-G solvation = 4.368784 kcal Electronic energy + Delta-G solvation = -16979.140764 eV Core-core repulsion = 14187.484389 eV Total energy + Delta-G solvation = -2791.656375 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.85874 -36.89918 -34.15153 -32.63164 -31.49070 -31.30823 -29.67792 -28.49687 -26.03993 -23.53784 -23.18461 -22.05374 -20.49897 -20.03111 -17.08396 -16.29005 -15.99983 -15.58637 -15.03454 -14.53456 -14.21944 -14.14566 -13.80896 -13.67114 -13.15378 -12.68384 -12.28809 -12.16728 -11.94182 -11.65586 -11.58076 -11.25777 -10.98405 -10.91282 -10.76635 -10.56805 -10.55202 -10.48490 -9.70268 -9.35437 -9.27219 -9.06902 -8.80614 -8.34198 -8.26698 -5.99235 -4.01296 0.81039 1.06248 1.35575 3.32593 3.35104 3.38751 3.42517 4.22172 4.47354 4.50882 4.57234 4.65905 5.09339 5.11969 5.27157 5.32441 5.36662 5.46217 5.68095 5.71798 5.75081 5.82522 5.91309 5.94824 6.02236 6.19728 6.28919 6.34883 6.56470 6.70399 6.76329 7.12878 7.28881 7.56159 7.68757 7.83485 8.01120 8.44315 9.05928 9.62733 11.12235 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.030631 B = 0.002181 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.879410 B =12832.339607 C =13385.893348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.118 3.882 3 H 0.053 0.947 4 N -0.684 5.684 5 C 0.059 3.941 6 C -0.106 4.106 7 C 0.022 3.978 8 C -0.519 4.519 9 H 0.055 0.945 10 C 0.055 3.945 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.274 1.274 16 C -0.068 4.068 17 C -0.094 4.094 18 C -0.092 4.092 19 C -0.094 4.094 20 Br -0.059 7.059 21 C -0.093 4.093 22 C -0.110 4.110 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.340 0.660 27 H 0.069 0.931 28 H 0.025 0.975 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.013 0.987 32 H 0.016 0.984 33 H 0.260 0.740 34 H 0.143 0.857 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.644 -6.452 -27.575 28.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.009 3.991 3 H 0.071 0.929 4 N -0.316 5.316 5 C -0.070 4.070 6 C -0.144 4.144 7 C -0.016 4.016 8 C -0.557 4.557 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.198 1.198 16 C -0.068 4.068 17 C -0.113 4.113 18 C -0.112 4.112 19 C -0.173 4.173 20 Br 0.026 6.974 21 C -0.112 4.112 22 C -0.129 4.129 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.158 0.842 27 H 0.087 0.913 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.032 0.968 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.161 0.839 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.039 -6.883 -27.853 28.763 hybrid contribution 1.040 0.373 0.962 1.465 sum -0.999 -6.511 -26.891 27.685 Atomic orbital electron populations 1.21777 0.93396 1.02633 1.01446 1.20510 0.96316 0.95385 0.86914 0.92937 1.60723 1.33346 1.33804 1.03697 1.22196 1.00620 0.93673 0.90469 1.21619 0.99291 0.99472 0.94063 1.19063 0.97100 0.94213 0.91179 1.21257 1.43471 0.96406 0.94558 0.92674 1.25032 0.95642 0.94897 0.98973 1.69964 1.48915 1.09004 1.25750 0.86595 0.78966 0.80042 0.82417 1.20706 1.21237 1.19846 1.20228 0.96897 0.94158 0.95565 1.21176 0.98216 0.94045 0.97872 1.21166 0.97777 1.00244 0.91990 1.21791 1.06595 0.94996 0.93955 1.96706 1.87343 1.78083 1.35267 1.21052 0.99105 0.92295 0.98783 1.21088 0.98950 1.00223 0.92657 0.92805 0.91834 0.91879 0.84203 0.91296 0.95653 0.92505 0.93678 0.96844 0.96574 0.93038 0.83925 0.85004 0.85148 0.85194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.47 9.39 37.16 0.35 -1.12 16 2 C 0.12 1.37 2.82 -68.86 -0.19 1.17 16 3 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 4 N -0.68 -9.35 5.69 -107.94 -0.61 -9.97 16 5 C 0.06 0.98 5.48 -3.82 -0.02 0.96 16 6 C -0.11 -2.17 5.41 -26.73 -0.14 -2.31 16 7 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 8 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 9 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 10 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 11 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 12 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 16 C -0.07 -0.71 4.72 -104.62 -0.49 -1.20 16 17 C -0.09 -0.96 9.00 -39.59 -0.36 -1.32 16 18 C -0.09 -0.89 9.79 -39.56 -0.39 -1.27 16 19 C -0.09 -0.91 6.22 -39.52 -0.25 -1.16 16 20 Br -0.06 -0.53 33.70 -68.01 -2.29 -2.82 16 21 C -0.09 -0.85 9.79 -39.55 -0.39 -1.24 16 22 C -0.11 -1.04 9.67 -39.59 -0.38 -1.42 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.74 7.45 -51.93 -0.39 0.35 16 26 H 0.34 4.51 7.98 -39.29 -0.31 4.19 16 27 H 0.07 1.17 7.44 -51.93 -0.39 0.78 16 28 H 0.03 0.43 8.06 -51.93 -0.42 0.01 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.14 1.44 7.71 -52.49 -0.40 1.04 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.13 1.02 8.04 -52.49 -0.42 0.60 16 LS Contribution 330.72 15.07 4.98 4.98 Total: -1.00 -29.68 330.72 -10.67 -40.35 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.65 Total: -0.85 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -2.81 Total: -22.08 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.12 Total: -36.33 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -2.29 Total: -2.82 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.68 -10.67 -40.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042224814.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.718 kcal (2) G-P(sol) polarization free energy of solvation -29.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds