Wall clock time and date at job start Tue Mar 31 2020 10:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46869 * 2 1 4 4 N 1.46905 * 109.47191 * 119.99949 * 2 1 3 5 5 C 1.46902 * 110.99800 * 274.99934 * 4 2 1 6 6 C 1.53006 * 109.46626 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46957 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99816 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00340 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99773 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00296 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47118 * 89.99310 * 12 10 8 14 14 H 1.48494 * 109.47201 * 209.99478 * 12 10 8 15 15 H 1.48498 * 109.47011 * 329.99452 * 12 10 8 16 16 C 1.50695 * 109.47212 * 240.00355 * 2 1 3 17 17 C 1.38246 * 119.98780 * 279.72102 * 16 2 1 18 18 C 1.38216 * 120.01071 * 179.76885 * 17 16 2 19 19 C 1.38327 * 119.98908 * 0.50747 * 18 17 16 20 20 Br 1.89101 * 120.01126 * 179.72825 * 19 18 17 21 21 C 1.38327 * 119.98006 * 359.74778 * 19 18 17 22 22 C 1.38225 * 119.98785 * 359.97438 * 21 19 18 23 23 H 1.09001 * 109.47129 * 59.99933 * 1 2 3 24 24 H 1.08996 * 109.47051 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46808 * 299.99830 * 1 2 3 26 26 H 1.00898 * 110.99743 * 151.04984 * 4 2 1 27 27 H 1.09000 * 109.47263 * 60.00269 * 5 4 2 28 28 H 1.09001 * 109.47582 * 299.99548 * 5 4 2 29 29 H 1.08993 * 109.46955 * 300.00347 * 6 5 4 30 30 H 1.09000 * 109.47050 * 60.00176 * 6 5 4 31 31 H 1.08993 * 109.47839 * 299.99931 * 7 6 5 32 32 H 1.09000 * 109.47160 * 60.00369 * 7 6 5 33 33 H 0.97000 * 120.00540 * 180.02562 * 11 10 8 34 34 H 1.07999 * 119.99427 * 0.02624 * 17 16 2 35 35 H 1.08001 * 120.00792 * 180.28123 * 18 17 16 36 36 H 1.07998 * 120.00531 * 179.97438 * 21 19 18 37 37 H 1.07996 * 119.99235 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5951 -0.5332 3.5745 7 6 2.6611 0.4201 4.7694 8 6 3.1666 -0.3242 5.9784 9 1 3.4162 -1.3722 5.9020 10 6 3.3104 0.3327 7.1821 11 7 3.0069 1.6090 7.2750 12 14 3.9377 -0.5896 8.6805 13 1 5.4186 -0.4955 8.7356 14 1 3.3576 0.0094 9.9092 15 1 3.5354 -2.0161 8.5879 16 6 2.0323 -0.7103 -1.2305 17 6 2.0721 -2.0918 -1.2630 18 6 2.5282 -2.7439 -2.3931 19 6 2.9549 -2.0137 -3.4877 20 35 3.5863 -2.9051 -5.0313 21 6 2.9200 -0.6314 -3.4528 22 6 2.4582 0.0198 -2.3243 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.9174 -1.1204 1.0287 27 1 1.0871 0.6163 2.5526 28 1 2.7589 1.0462 2.1183 29 1 1.9184 -1.3565 3.8029 30 1 3.5904 -0.9273 3.3691 31 1 3.3380 1.2431 4.5407 32 1 1.6660 0.8145 4.9749 33 1 3.1084 2.0713 8.1216 34 1 1.7427 -2.6617 -0.4068 35 1 2.5550 -3.8232 -2.4201 36 1 3.2534 -0.0609 -4.3071 37 1 2.4305 1.0990 -2.2971 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042224814.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:29 Heat of formation + Delta-G solvation = -11.198375 kcal Electronic energy + Delta-G solvation = -16979.815807 eV Core-core repulsion = 14187.484389 eV Total energy + Delta-G solvation = -2792.331418 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.64572 -38.02059 -35.85706 -34.16703 -32.66113 -32.03649 -30.99914 -29.32703 -27.80003 -24.87318 -24.05011 -23.28162 -21.93298 -21.18979 -18.50422 -17.87054 -16.97234 -16.57415 -16.45600 -16.04130 -15.31288 -15.23395 -14.93558 -14.41949 -14.34409 -14.09927 -13.70416 -13.44156 -13.34173 -12.95937 -12.75807 -12.54879 -12.46843 -12.25294 -12.13404 -11.82230 -11.67534 -11.48126 -11.35353 -11.26260 -11.07557 -10.54829 -9.99713 -9.57839 -9.40881 -8.19835 -6.30642 0.05222 0.33750 0.63515 1.40420 1.41687 1.53023 2.41296 2.59828 3.13373 3.16919 3.63887 3.83483 3.97506 4.22299 4.28176 4.31276 4.40770 4.50137 4.55181 4.70472 4.72876 4.81948 4.95271 4.98733 5.02544 5.15461 5.21154 5.23601 5.25236 5.37091 5.50132 5.55622 5.76466 5.82608 5.86969 6.08077 6.27875 6.45212 6.86544 7.38606 8.92080 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.030631 B = 0.002181 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.879410 B =12832.339607 C =13385.893348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.121 3.879 3 H 0.054 0.946 4 N -0.681 5.681 5 C 0.073 3.927 6 C -0.092 4.092 7 C 0.025 3.975 8 C -0.543 4.543 9 H 0.059 0.941 10 C -0.002 4.002 11 N -0.934 5.934 12 Si 0.965 3.035 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.263 1.263 16 C -0.076 4.076 17 C -0.100 4.100 18 C -0.096 4.096 19 C -0.103 4.103 20 Br -0.053 7.053 21 C -0.094 4.094 22 C -0.111 4.111 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.344 0.656 27 H 0.065 0.935 28 H 0.023 0.977 29 H 0.053 0.947 30 H 0.049 0.951 31 H -0.010 1.010 32 H -0.008 1.008 33 H 0.263 0.737 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.252 -7.320 -28.423 29.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.011 3.989 3 H 0.072 0.928 4 N -0.313 5.313 5 C -0.056 4.056 6 C -0.130 4.130 7 C -0.013 4.013 8 C -0.581 4.581 9 H 0.077 0.923 10 C -0.199 4.199 11 N -0.574 5.574 12 Si 0.789 3.211 13 H -0.198 1.198 14 H -0.207 1.207 15 H -0.188 1.188 16 C -0.077 4.077 17 C -0.119 4.119 18 C -0.116 4.116 19 C -0.182 4.182 20 Br 0.032 6.968 21 C -0.114 4.114 22 C -0.130 4.130 23 H 0.089 0.911 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.162 0.838 27 H 0.083 0.917 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.009 0.991 32 H 0.010 0.990 33 H 0.072 0.928 34 H 0.158 0.842 35 H 0.161 0.839 36 H 0.165 0.835 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.648 -7.764 -28.724 29.800 hybrid contribution 0.912 0.651 1.155 1.609 sum -0.736 -7.113 -27.569 28.482 Atomic orbital electron populations 1.21759 0.92960 1.02532 1.01740 1.20511 0.96608 0.95352 0.86380 0.92788 1.60635 1.33638 1.33215 1.03839 1.21876 1.00018 0.93461 0.90241 1.21361 0.99707 0.98292 0.93600 1.18970 0.94841 0.94439 0.93010 1.21709 1.43654 0.96872 0.95816 0.92267 1.25989 0.95716 0.95794 1.02443 1.70093 1.49878 1.10686 1.26781 0.85450 0.78581 0.78947 0.78107 1.19757 1.20711 1.18758 1.20142 0.97810 0.94275 0.95432 1.21192 0.98542 0.94054 0.98101 1.21306 0.97567 1.00914 0.91805 1.21967 1.06555 0.95449 0.94230 1.96713 1.87249 1.78016 1.34808 1.21278 0.98619 0.92273 0.99224 1.21273 0.98347 1.01085 0.92283 0.91095 0.92120 0.92992 0.83768 0.91701 0.95860 0.92785 0.93258 0.99145 0.98976 0.92778 0.84157 0.83934 0.83525 0.83614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.39 71.98 0.68 -2.06 16 2 C 0.12 2.64 2.82 44.17 0.12 2.76 16 3 H 0.05 1.19 7.66 -2.38 -0.02 1.17 16 4 N -0.68 -18.02 5.69 -495.42 -2.82 -20.84 16 5 C 0.07 2.42 5.48 86.31 0.47 2.89 16 6 C -0.09 -3.75 5.41 30.60 0.17 -3.58 16 7 C 0.03 1.33 4.97 29.85 0.15 1.47 16 8 C -0.54 -31.21 9.11 25.60 0.23 -30.98 16 9 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 10 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 11 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 12 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 13 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 14 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 15 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 16 C -0.08 -1.47 4.72 -19.86 -0.09 -1.56 16 17 C -0.10 -1.91 9.00 22.27 0.20 -1.71 16 18 C -0.10 -1.72 9.79 22.29 0.22 -1.50 16 19 C -0.10 -1.82 6.22 22.31 0.14 -1.68 16 20 Br -0.05 -0.86 33.70 -20.37 -0.69 -1.55 16 21 C -0.09 -1.54 9.79 22.29 0.22 -1.32 16 22 C -0.11 -1.87 9.67 22.27 0.22 -1.65 16 23 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.05 1.18 7.45 -2.39 -0.02 1.17 16 26 H 0.34 8.73 7.98 -89.70 -0.72 8.02 16 27 H 0.06 2.21 7.44 -2.39 -0.02 2.19 16 28 H 0.02 0.78 8.06 -2.39 -0.02 0.76 16 29 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 31 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H -0.01 -0.47 8.14 -2.39 -0.02 -0.48 16 33 H 0.26 15.13 8.31 -92.71 -0.77 14.35 16 34 H 0.14 2.70 7.71 -2.91 -0.02 2.68 16 35 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.15 1.94 8.04 -2.91 -0.02 1.92 16 Total: -1.00 -62.98 330.72 2.32 -60.66 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.33 Total: 10.69 kcal Atomic # 6 Polarization: -41.75 SS G_CDS: 3.18 Total: -38.57 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -2.53 Total: -77.79 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 35 Polarization: -0.86 SS G_CDS: -0.69 Total: -1.55 kcal Total: -62.98 2.32 -60.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042224814.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.462 kcal (2) G-P(sol) polarization free energy of solvation -62.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds