Wall clock time and date at job start Tue Mar 31 2020 10:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47215 * 2 1 4 4 N 1.46898 * 109.46877 * 119.99963 * 2 1 3 5 5 C 1.46900 * 111.00445 * 297.48878 * 4 2 1 6 6 C 1.50706 * 109.46586 * 77.42646 * 5 4 2 7 7 H 1.07999 * 120.00085 * 1.79341 * 6 5 4 8 8 C 1.37879 * 119.99824 * 181.79377 * 6 5 4 9 9 N 1.31516 * 120.00079 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 119.99957 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47106 * 90.00573 * 10 8 6 12 12 H 1.48503 * 109.47407 * 209.99714 * 10 8 6 13 13 H 1.48497 * 109.47510 * 330.00513 * 10 8 6 14 14 C 1.46908 * 110.99981 * 173.53825 * 4 2 1 15 15 C 1.50703 * 109.46901 * 293.95713 * 14 4 2 16 16 C 1.38248 * 119.98348 * 269.72243 * 15 14 4 17 17 C 1.38226 * 120.00214 * 179.76975 * 16 15 14 18 18 C 1.38320 * 119.99199 * 0.50808 * 17 16 15 19 19 Br 1.89096 * 120.01051 * 179.72388 * 18 17 16 20 20 C 1.38329 * 119.97897 * 359.74574 * 18 17 16 21 21 C 1.38214 * 119.99255 * 359.97438 * 20 18 17 22 22 H 1.08997 * 109.47220 * 306.67631 * 1 2 3 23 23 H 1.08998 * 109.47012 * 66.67266 * 1 2 3 24 24 H 1.09001 * 109.47078 * 186.67164 * 1 2 3 25 25 H 1.09003 * 109.47357 * 239.99936 * 2 1 3 26 26 H 1.08998 * 109.47127 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47326 * 299.99824 * 3 2 1 28 28 H 1.09008 * 109.46786 * 60.00149 * 3 2 1 29 29 H 1.08993 * 109.47656 * 197.42342 * 5 4 2 30 30 H 1.08997 * 109.46719 * 317.43218 * 5 4 2 31 31 H 0.96996 * 119.99945 * 180.02562 * 9 8 6 32 32 H 1.08998 * 109.47119 * 53.95365 * 14 4 2 33 33 H 1.08994 * 109.47243 * 173.95675 * 14 4 2 34 34 H 1.07997 * 119.99701 * 0.02562 * 16 15 14 35 35 H 1.07997 * 120.00012 * 180.22924 * 17 16 15 36 36 H 1.08004 * 120.00433 * 179.97438 * 20 18 17 37 37 H 1.07999 * 119.99891 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.5983 0.0074 2.4204 6 6 0.1498 -0.3000 2.7010 7 1 -0.3944 -0.9730 2.0550 8 6 -0.4806 0.2781 3.7824 9 7 0.1820 1.0981 4.5687 10 14 -2.2761 -0.1022 4.1298 11 1 -2.3676 -1.2843 5.0241 12 1 -2.9113 1.0672 4.7889 13 1 -2.9768 -0.3920 2.8531 14 6 3.4799 -0.8472 1.1588 15 6 3.8556 -1.7739 0.0312 16 6 3.9550 -3.1339 0.2586 17 6 4.2949 -3.9847 -0.7764 18 6 4.5459 -3.4740 -2.0372 19 35 5.0186 -4.6366 -3.4516 20 6 4.4515 -2.1125 -2.2628 21 6 4.1059 -1.2631 -1.2287 22 1 -0.3633 0.6138 0.8242 23 1 -0.3633 0.4069 -0.9436 24 1 -0.3633 -1.0207 0.1194 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8901 29 1 2.2094 -0.3254 3.2593 30 1 1.7220 1.0817 2.2843 31 1 -0.2614 1.5045 5.3297 32 1 3.9441 0.1260 0.9992 33 1 3.8275 -1.2651 2.1036 34 1 3.7630 -3.5320 1.2440 35 1 4.3689 -5.0475 -0.5996 36 1 4.6478 -1.7133 -3.2470 37 1 4.0325 -0.2001 -1.4047 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042324204.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:12 Heat of formation + Delta-G solvation = 31.227493 kcal Electronic energy + Delta-G solvation = -18215.272200 eV Core-core repulsion = 15424.780505 eV Total energy + Delta-G solvation = -2790.491694 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.54153 -37.49702 -33.10680 -32.44792 -31.10330 -30.84031 -29.40044 -27.33263 -26.18416 -24.36329 -22.82824 -22.14972 -21.04150 -18.63651 -16.65197 -16.16137 -15.59969 -15.30111 -15.03028 -14.55415 -13.94886 -13.52845 -13.43083 -13.18801 -12.92933 -12.41394 -12.22637 -11.77222 -11.34837 -11.26209 -11.15448 -11.00970 -10.90753 -10.67272 -10.65231 -10.61679 -10.33987 -10.27220 -10.15313 -9.43185 -9.09308 -8.91205 -8.51455 -8.36635 -7.23128 -6.01798 -3.98888 1.17036 1.38994 1.61084 3.31768 3.38528 3.41729 3.68709 4.43271 4.80679 4.93588 4.97180 5.09775 5.32499 5.38950 5.44801 5.64282 5.73610 5.76755 5.86561 6.00132 6.06105 6.12558 6.23936 6.31251 6.33239 6.49552 6.57025 6.67858 6.75266 6.90456 6.95183 7.18480 7.40197 7.48559 7.84444 8.11725 8.19282 8.53688 9.06084 9.61271 11.08603 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.029434 B = 0.003204 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.046836 B = 8735.713723 C = 8922.493438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.085 3.915 3 C -0.188 4.188 4 N -0.523 5.523 5 C 0.184 3.816 6 C -0.497 4.497 7 H 0.071 0.929 8 C 0.052 3.948 9 N -0.901 5.901 10 Si 0.892 3.108 11 H -0.281 1.281 12 H -0.289 1.289 13 H -0.273 1.273 14 C 0.082 3.918 15 C -0.041 4.041 16 C -0.095 4.095 17 C -0.092 4.092 18 C -0.098 4.098 19 Br -0.067 7.067 20 C -0.094 4.094 21 C -0.111 4.111 22 H 0.091 0.909 23 H 0.028 0.972 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.023 0.977 30 H 0.008 0.992 31 H 0.260 0.740 32 H 0.039 0.961 33 H 0.079 0.921 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.770 -7.852 -14.747 19.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 C -0.247 4.247 4 N -0.247 5.247 5 C 0.060 3.940 6 C -0.535 4.535 7 H 0.089 0.911 8 C -0.149 4.149 9 N -0.541 5.541 10 Si 0.721 3.279 11 H -0.208 1.208 12 H -0.215 1.215 13 H -0.198 1.198 14 C -0.046 4.046 15 C -0.042 4.042 16 C -0.114 4.114 17 C -0.112 4.112 18 C -0.178 4.178 19 Br 0.018 6.982 20 C -0.114 4.114 21 C -0.130 4.130 22 H 0.109 0.891 23 H 0.047 0.953 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.042 0.958 30 H 0.026 0.974 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.700 -8.639 -15.090 20.416 hybrid contribution -0.703 0.917 0.581 1.293 sum 9.997 -7.722 -14.509 19.237 Atomic orbital electron populations 1.22109 0.94172 1.02794 1.00733 1.21532 0.96503 0.91169 0.93156 1.22509 1.00003 0.99683 1.02491 1.62464 1.06342 1.51837 1.04044 1.19900 0.96479 0.92538 0.85108 1.21338 0.95419 1.26309 1.10455 0.91100 1.24974 0.98147 0.95540 0.96192 1.69954 1.36558 1.31006 1.16611 0.86580 0.85167 0.77698 0.78503 1.20765 1.21467 1.19782 1.21152 0.91661 0.96063 0.95740 1.20173 0.94423 0.94607 0.94978 1.21110 0.98332 0.92686 0.99270 1.21073 0.98782 1.00193 0.91180 1.21660 1.08924 0.93906 0.93263 1.96652 1.91988 1.63441 1.46120 1.21004 0.99386 0.91354 0.99623 1.21116 0.99711 0.99898 0.92317 0.89051 0.95338 0.92671 0.91999 0.93783 0.93328 0.90848 0.95843 0.97394 0.93054 0.94339 0.90224 0.84877 0.85372 0.85502 0.85457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 7.73 37.16 0.29 -2.46 16 2 C 0.09 1.56 2.67 -67.71 -0.18 1.38 16 3 C -0.19 -3.21 8.57 37.16 0.32 -2.89 16 4 N -0.52 -10.48 4.48 -229.51 -1.03 -11.51 16 5 C 0.18 4.47 4.50 -4.97 -0.02 4.45 16 6 C -0.50 -13.10 6.59 -34.44 -0.23 -13.32 16 7 H 0.07 1.87 5.84 -52.49 -0.31 1.56 16 8 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 9 N -0.90 -25.89 13.29 55.43 0.74 -25.16 16 10 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 14 C 0.08 1.37 4.94 -4.97 -0.02 1.35 16 15 C -0.04 -0.60 4.90 -104.62 -0.51 -1.11 16 16 C -0.09 -1.30 9.70 -39.58 -0.38 -1.69 16 17 C -0.09 -1.16 9.79 -39.56 -0.39 -1.55 16 18 C -0.10 -1.23 6.22 -39.52 -0.25 -1.47 16 19 Br -0.07 -0.74 33.70 -68.01 -2.29 -3.03 16 20 C -0.09 -1.15 9.79 -39.56 -0.39 -1.54 16 21 C -0.11 -1.47 7.88 -39.59 -0.31 -1.78 16 22 H 0.09 2.04 5.79 -51.93 -0.30 1.74 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.05 1.12 7.29 -51.93 -0.38 0.74 16 25 H 0.06 1.06 5.71 -51.93 -0.30 0.76 16 26 H 0.04 0.68 6.23 -51.93 -0.32 0.36 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 1.45 6.02 -51.92 -0.31 1.14 16 29 H 0.02 0.61 7.70 -51.93 -0.40 0.21 16 30 H 0.01 0.21 5.47 -51.93 -0.28 -0.07 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.04 0.63 6.18 -51.93 -0.32 0.31 16 33 H 0.08 1.34 7.76 -51.93 -0.40 0.94 16 34 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.13 1.57 7.72 -52.49 -0.41 1.16 16 LS Contribution 311.54 15.07 4.69 4.69 Total: -1.00 -27.57 311.54 -10.06 -37.63 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -4.98 Total: 0.57 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -2.17 Total: -19.32 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: -0.29 Total: -36.66 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 35 Polarization: -0.74 SS G_CDS: -2.29 Total: -3.03 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.57 -10.06 -37.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042324204.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.862 kcal (2) G-P(sol) polarization free energy of solvation -27.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds