Wall clock time and date at job start Tue Mar 31 2020 10:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47109 * 2 1 4 4 N 1.46898 * 109.47071 * 239.99948 * 2 1 3 5 5 C 1.46896 * 111.00199 * 65.48647 * 4 2 1 6 6 C 1.50695 * 109.47462 * 281.60539 * 5 4 2 7 7 H 1.08005 * 120.00103 * 358.48892 * 6 5 4 8 8 C 1.37874 * 120.00388 * 178.48803 * 6 5 4 9 9 N 1.31518 * 119.99917 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 119.99808 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47273 * 90.00157 * 10 8 6 12 12 H 1.48506 * 109.47147 * 209.99851 * 10 8 6 13 13 H 1.48499 * 109.46944 * 329.99839 * 10 8 6 14 14 C 1.46901 * 110.99907 * 189.44196 * 4 2 1 15 15 C 1.50703 * 109.47268 * 74.69948 * 14 4 2 16 16 C 1.38262 * 119.99353 * 266.84389 * 15 14 4 17 17 C 1.38219 * 120.02120 * 179.72731 * 16 15 14 18 18 C 1.38236 * 120.00778 * 0.54500 * 17 16 15 19 19 C 1.38302 * 119.98953 * 359.72994 * 18 17 16 20 20 Br 1.89109 * 120.01118 * 180.02562 * 19 18 17 21 21 C 1.38189 * 119.99524 * 87.11504 * 15 14 4 22 22 H 1.09008 * 109.46864 * 51.14516 * 1 2 3 23 23 H 1.09002 * 109.47412 * 171.13539 * 1 2 3 24 24 H 1.08999 * 109.47255 * 291.14470 * 1 2 3 25 25 H 1.09001 * 109.46987 * 119.99949 * 2 1 3 26 26 H 1.08998 * 109.47258 * 67.08863 * 3 2 1 27 27 H 1.09005 * 109.46807 * 187.08869 * 3 2 1 28 28 H 1.08996 * 109.47091 * 307.08373 * 3 2 1 29 29 H 1.08997 * 109.47005 * 41.60816 * 5 4 2 30 30 H 1.09007 * 109.47300 * 161.60587 * 5 4 2 31 31 H 0.96998 * 119.99555 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.47053 * 194.69877 * 14 4 2 33 33 H 1.08996 * 109.47123 * 314.69611 * 14 4 2 34 34 H 1.08000 * 119.98964 * 359.97438 * 16 15 14 35 35 H 1.07998 * 119.99547 * 180.27729 * 17 16 15 36 36 H 1.08000 * 120.00973 * 179.75223 * 18 17 16 37 37 H 1.08002 * 120.01036 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 1.6587 0.0451 -2.4174 6 6 0.2124 -0.2144 -2.7518 7 1 -0.3729 -0.8816 -2.1364 8 6 -0.3638 0.4000 -3.8433 9 7 -1.6262 0.1740 -4.1348 10 14 0.6486 1.5536 -4.9082 11 1 1.2965 0.7805 -5.9980 12 1 -0.2375 2.5903 -5.4960 13 1 1.6914 2.2070 -4.0771 14 6 3.4706 -0.9100 -1.1262 15 6 3.7631 -2.0247 -0.1550 16 6 4.0361 -1.7340 1.1688 17 6 4.2990 -2.7562 2.0613 18 6 4.3001 -4.0690 1.6281 19 6 4.0327 -4.3598 0.3027 20 35 4.0333 -6.1554 -0.2905 21 6 3.7640 -3.3366 -0.5890 22 1 -0.3633 0.6448 -0.8004 23 1 -0.3634 -1.0154 -0.1584 24 1 -0.3634 0.3707 0.9585 25 1 1.8933 -0.5138 0.8900 26 1 1.7839 1.9184 0.9466 27 1 3.1226 1.4451 -0.1268 28 1 1.5769 1.9916 -0.8198 29 1 1.8079 1.1123 -2.2536 30 1 2.2878 -0.2872 -3.2433 31 1 -2.0316 0.6065 -4.9025 32 1 3.8478 -1.1794 -2.1128 33 1 3.9584 0.0041 -0.7879 34 1 4.0401 -0.7082 1.5066 35 1 4.5077 -2.5290 3.0962 36 1 4.5094 -4.8674 2.3245 37 1 3.5547 -3.5634 -1.6240 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042324967.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:14 Heat of formation + Delta-G solvation = 34.928710 kcal Electronic energy + Delta-G solvation = -18278.392756 eV Core-core repulsion = 15488.061559 eV Total energy + Delta-G solvation = -2790.331197 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.53035 -37.62476 -32.94285 -32.36264 -31.95944 -30.30439 -29.24911 -27.84963 -26.46208 -24.67549 -22.51308 -21.84706 -21.04484 -18.68466 -16.92791 -16.50875 -15.70450 -15.28444 -15.03486 -14.47125 -14.01908 -13.56860 -13.32995 -13.31428 -12.98986 -12.55045 -12.41009 -11.75498 -11.50554 -11.41864 -11.22097 -11.12896 -10.94571 -10.73404 -10.65303 -10.54086 -10.30408 -10.24460 -10.00617 -9.70908 -9.07196 -8.78554 -8.61360 -8.50407 -7.34987 -6.02114 -3.96228 1.16242 1.36721 1.66655 3.27318 3.35084 3.36194 3.65799 4.42606 4.75638 4.80031 4.95589 5.10280 5.27761 5.34000 5.36489 5.51426 5.61377 5.72519 5.77508 5.92666 5.95833 6.02484 6.22900 6.25701 6.33841 6.42809 6.49645 6.58320 6.65957 6.84103 6.87578 6.89359 7.10801 7.44910 7.65732 7.90173 8.05070 8.69018 9.10333 9.59230 11.10354 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.018143 B = 0.004175 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.961551 B = 6704.380274 C = 7556.009773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.087 3.913 3 C -0.187 4.187 4 N -0.514 5.514 5 C 0.153 3.847 6 C -0.499 4.499 7 H 0.090 0.910 8 C 0.067 3.933 9 N -0.901 5.901 10 Si 0.867 3.133 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.269 1.269 14 C 0.081 3.919 15 C -0.052 4.052 16 C -0.101 4.101 17 C -0.117 4.117 18 C -0.101 4.101 19 C -0.089 4.089 20 Br -0.061 7.061 21 C -0.068 4.068 22 H 0.090 0.910 23 H 0.058 0.942 24 H 0.029 0.971 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.004 0.996 30 H 0.018 0.982 31 H 0.262 0.738 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.082 -7.544 11.715 19.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.021 4.021 3 C -0.245 4.245 4 N -0.238 5.238 5 C 0.027 3.973 6 C -0.538 4.538 7 H 0.108 0.892 8 C -0.134 4.134 9 N -0.540 5.540 10 Si 0.695 3.305 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.194 1.194 14 C -0.047 4.047 15 C -0.054 4.054 16 C -0.120 4.120 17 C -0.136 4.136 18 C -0.121 4.121 19 C -0.168 4.168 20 Br 0.024 6.976 21 C -0.089 4.089 22 H 0.108 0.892 23 H 0.077 0.923 24 H 0.048 0.952 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.021 0.979 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 13.696 -8.625 11.311 19.746 hybrid contribution 0.828 1.797 -0.524 2.047 sum 14.524 -6.828 10.787 19.337 Atomic orbital electron populations 1.22040 0.93506 1.03497 1.00489 1.21545 0.96946 0.90998 0.92658 1.22501 1.00275 0.99725 1.02039 1.62237 1.08376 1.49793 1.03359 1.20380 0.98070 0.92080 0.86739 1.21201 0.93606 1.27336 1.11639 0.89195 1.24886 0.94772 0.96614 0.97168 1.69885 1.11682 1.44149 1.28297 0.86989 0.80604 0.81488 0.81415 1.20323 1.21339 1.19383 1.21165 0.91615 0.94262 0.97637 1.19955 0.96516 0.94408 0.94520 1.21213 0.98375 0.99456 0.92951 1.21057 1.00772 0.92118 0.99681 1.20999 1.00106 0.97257 0.93773 1.21744 1.08256 0.90534 0.96274 1.96679 1.97878 1.12997 1.90041 1.21040 0.96821 0.91148 0.99850 0.89168 0.92299 0.95211 0.91891 0.93095 0.93628 0.91282 0.97877 0.96420 0.92780 0.90292 0.94046 0.85814 0.85534 0.85538 0.84806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 7.77 37.16 0.29 -2.44 16 2 C 0.09 1.56 2.83 -67.71 -0.19 1.37 16 3 C -0.19 -3.04 8.42 37.16 0.31 -2.73 16 4 N -0.51 -10.10 4.38 -229.52 -1.01 -11.10 16 5 C 0.15 3.50 3.60 -4.98 -0.02 3.48 16 6 C -0.50 -13.44 7.31 -34.44 -0.25 -13.69 16 7 H 0.09 2.64 6.16 -52.48 -0.32 2.32 16 8 C 0.07 1.86 5.47 -17.82 -0.10 1.77 16 9 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 10 Si 0.87 20.93 27.50 -169.99 -4.67 16.26 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.21 6.50 56.52 0.37 -5.85 16 14 C 0.08 1.31 5.03 -4.97 -0.02 1.29 16 15 C -0.05 -0.76 5.06 -104.63 -0.53 -1.29 16 16 C -0.10 -1.27 8.29 -39.58 -0.33 -1.60 16 17 C -0.12 -1.31 10.05 -39.59 -0.40 -1.70 16 18 C -0.10 -1.19 9.79 -39.56 -0.39 -1.57 16 19 C -0.09 -1.18 6.22 -39.52 -0.25 -1.43 16 20 Br -0.06 -0.75 33.70 -68.01 -2.29 -3.05 16 21 C -0.07 -1.00 9.46 -39.56 -0.37 -1.38 16 22 H 0.09 2.06 5.93 -51.92 -0.31 1.75 16 23 H 0.06 1.25 7.39 -51.93 -0.38 0.87 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 1.03 6.09 -51.93 -0.32 0.72 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.68 6.22 -51.93 -0.32 0.35 16 28 H 0.07 1.28 6.32 -51.93 -0.33 0.95 16 29 H 0.00 0.08 4.42 -51.93 -0.23 -0.15 16 30 H 0.02 0.41 7.06 -51.92 -0.37 0.04 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.08 1.27 7.56 -51.93 -0.39 0.87 16 33 H 0.04 0.62 5.99 -51.93 -0.31 0.31 16 34 H 0.12 1.39 7.88 -52.49 -0.41 0.97 16 35 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 37 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 309.33 15.07 4.66 4.66 Total: -1.00 -28.72 309.33 -9.76 -38.48 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -4.98 Total: 0.84 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -2.24 Total: -19.92 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: -0.23 Total: -37.28 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Atomic # 35 Polarization: -0.75 SS G_CDS: -2.29 Total: -3.05 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.72 -9.76 -38.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042324967.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.412 kcal (2) G-P(sol) polarization free energy of solvation -28.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds