Wall clock time and date at job start Tue Mar 31 2020 10:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46959 * 2 1 4 4 H 1.09005 * 109.46839 * 57.01714 * 3 2 1 5 5 C 1.50703 * 109.46962 * 177.01260 * 3 2 1 6 6 H 1.07998 * 119.99731 * 119.99801 * 5 3 2 7 7 C 1.37879 * 119.99776 * 300.00179 * 5 3 2 8 8 N 1.31511 * 120.00487 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99780 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47029 * 359.97438 * 9 7 5 11 11 H 1.48490 * 109.47223 * 119.99658 * 9 7 5 12 12 H 1.48503 * 109.46964 * 240.00182 * 9 7 5 13 13 N 1.46894 * 109.47327 * 297.01303 * 3 2 1 14 14 C 1.46904 * 111.00045 * 295.70810 * 13 3 2 15 15 C 1.46897 * 111.00026 * 171.75132 * 13 3 2 16 16 C 1.50708 * 109.46765 * 199.36903 * 15 13 3 17 17 C 1.38239 * 119.98697 * 90.00538 * 16 15 13 18 18 C 1.38224 * 120.00661 * 180.25075 * 17 16 15 19 19 C 1.38323 * 119.98610 * 359.51343 * 18 17 16 20 20 Br 1.89104 * 120.00739 * 180.23265 * 19 18 17 21 21 C 1.38325 * 119.98407 * 0.50356 * 19 18 17 22 22 C 1.38221 * 119.98814 * 359.72808 * 21 19 18 23 23 H 1.09004 * 109.47255 * 295.38509 * 1 2 3 24 24 H 1.08996 * 109.47595 * 55.39040 * 1 2 3 25 25 H 1.09008 * 109.47177 * 175.39208 * 1 2 3 26 26 H 1.08993 * 109.47267 * 239.99777 * 2 1 3 27 27 H 1.09004 * 109.46939 * 119.99831 * 2 1 3 28 28 H 0.97000 * 120.00090 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.46496 * 296.04607 * 14 13 3 30 30 H 1.08996 * 109.46899 * 56.04220 * 14 13 3 31 31 H 1.08997 * 109.47423 * 176.04841 * 14 13 3 32 32 H 1.08997 * 109.47097 * 79.37097 * 15 13 3 33 33 H 1.08996 * 109.46981 * 319.36810 * 15 13 3 34 34 H 1.07994 * 119.99794 * 359.97120 * 17 16 15 35 35 H 1.07998 * 120.00313 * 179.74052 * 18 17 16 36 36 H 1.08004 * 120.00657 * 179.70458 * 21 19 18 37 37 H 1.08001 * 119.99180 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6335 1.9715 0.8621 5 6 3.5451 1.4432 0.0740 6 1 4.1244 1.8969 -0.7165 7 6 4.1826 0.8644 1.1510 8 7 3.4772 0.3123 2.1138 9 14 6.0484 0.8659 1.2431 10 1 6.6026 1.5449 0.0444 11 1 6.4830 1.5869 2.4663 12 1 6.5426 -0.5337 1.2915 13 7 1.6101 2.1139 -1.2338 14 6 2.2221 1.4887 -2.4140 15 6 1.9110 3.5508 -1.1835 16 6 1.0657 4.2768 -2.1983 17 6 -0.1791 4.7605 -1.8413 18 6 -0.9569 5.4219 -2.7731 19 6 -0.4852 5.6085 -4.0600 20 35 -1.5461 6.5190 -5.3334 21 6 0.7603 5.1240 -4.4167 22 6 1.5354 4.4585 -3.4857 23 1 -0.3634 0.4406 0.9285 24 1 -0.3634 0.5837 -0.8458 25 1 -0.3634 -1.0244 -0.0826 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9257 -0.0952 2.8713 29 1 3.3037 1.6181 -2.3738 30 1 1.9836 0.4253 -2.4265 31 1 1.8333 1.9591 -3.3171 32 1 2.9656 3.7093 -1.4090 33 1 1.6911 3.9334 -0.1869 34 1 -0.5459 4.6177 -0.8357 35 1 -1.9312 5.7961 -2.4954 36 1 1.1270 5.2653 -5.4228 37 1 2.5081 4.0805 -3.7640 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042439968.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:50 Heat of formation + Delta-G solvation = 23.906376 kcal Electronic energy + Delta-G solvation = -18127.354056 eV Core-core repulsion = 15336.544894 eV Total energy + Delta-G solvation = -2790.809162 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.33372 -37.10505 -33.46175 -32.07942 -31.14127 -30.93311 -29.43870 -26.83667 -26.12293 -23.89432 -22.62654 -22.22158 -20.53739 -19.00939 -16.63315 -16.26269 -15.38662 -15.21206 -15.06670 -14.35418 -13.60333 -13.54539 -13.37087 -13.07990 -12.75953 -12.36423 -12.21420 -11.70801 -11.31198 -11.29125 -11.07041 -10.92446 -10.74462 -10.72686 -10.59782 -10.49461 -10.29998 -10.03196 -9.71256 -9.50142 -9.12386 -8.88724 -8.44132 -8.40692 -7.21018 -6.03722 -4.17354 1.23638 1.44345 1.64788 3.22169 3.31378 3.33702 3.75481 4.35326 4.87277 4.98243 5.04195 5.22566 5.34818 5.47899 5.52971 5.80246 5.90606 6.14386 6.15307 6.29000 6.33245 6.38195 6.44579 6.45486 6.55159 6.66478 6.74951 6.84046 6.97236 7.09897 7.15905 7.30328 7.55834 7.72238 7.91034 8.09754 8.23452 8.40964 8.92356 9.50709 10.95614 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.030466 B = 0.003178 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.846967 B = 8808.065659 C = 9275.157692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C 0.213 3.787 4 H 0.039 0.961 5 C -0.545 4.545 6 H 0.057 0.943 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.530 5.530 14 C 0.030 3.970 15 C 0.095 3.905 16 C -0.038 4.038 17 C -0.098 4.098 18 C -0.093 4.093 19 C -0.100 4.100 20 Br -0.069 7.069 21 C -0.094 4.094 22 C -0.110 4.110 23 H 0.038 0.962 24 H 0.050 0.950 25 H 0.025 0.975 26 H 0.033 0.967 27 H 0.092 0.908 28 H 0.261 0.739 29 H 0.030 0.970 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.713 10.585 -12.251 18.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C 0.107 3.893 4 H 0.056 0.944 5 C -0.584 4.584 6 H 0.075 0.925 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.254 5.254 14 C -0.118 4.118 15 C -0.034 4.034 16 C -0.039 4.039 17 C -0.117 4.117 18 C -0.113 4.113 19 C -0.180 4.180 20 Br 0.016 6.984 21 C -0.113 4.113 22 C -0.130 4.130 23 H 0.057 0.943 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.110 0.890 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.597 10.761 -12.571 19.129 hybrid contribution 2.210 -0.230 0.445 2.266 sum -7.387 10.531 -12.126 17.678 Atomic orbital electron populations 1.21729 0.98843 0.98552 1.00610 1.21601 0.92228 0.99034 1.02022 1.19340 0.92823 0.91158 0.85943 0.94355 1.21775 0.92682 1.37727 1.06226 0.92492 1.24904 0.97919 0.94976 0.95544 1.69879 1.34894 1.37713 1.09767 0.86635 0.86227 0.77764 0.77939 1.19971 1.21001 1.20987 1.62454 1.57944 1.00094 1.04879 1.22270 0.97445 0.99611 0.92495 1.20925 0.95830 0.90102 0.96495 1.20338 0.94682 0.94162 0.94765 1.21092 0.93677 0.97180 0.99742 1.21057 0.99925 0.98796 0.91526 1.21639 0.96573 1.05467 0.94282 1.96643 1.69294 1.76220 1.56257 1.21010 0.92742 0.97723 0.99871 1.21123 1.00145 0.98816 0.92886 0.94333 0.93084 0.95634 0.94804 0.88999 0.92904 0.95142 0.91959 0.94010 0.93636 0.90417 0.85069 0.85496 0.85597 0.85479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.84 37.16 0.37 -2.42 16 2 C -0.11 -2.53 5.08 -26.73 -0.14 -2.67 16 3 C 0.21 4.99 1.72 -68.87 -0.12 4.87 16 4 H 0.04 1.00 7.87 -51.93 -0.41 0.59 16 5 C -0.55 -13.92 7.33 -34.44 -0.25 -14.17 16 6 H 0.06 1.46 5.94 -52.49 -0.31 1.15 16 7 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 8 N -0.88 -24.14 11.30 55.43 0.63 -23.51 16 9 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 N -0.53 -10.52 3.93 -237.73 -0.94 -11.45 16 14 C 0.03 0.57 8.66 60.07 0.52 1.09 16 15 C 0.09 1.69 4.63 -4.97 -0.02 1.67 16 16 C -0.04 -0.58 5.13 -104.62 -0.54 -1.12 16 17 C -0.10 -1.36 9.70 -39.59 -0.38 -1.75 16 18 C -0.09 -1.19 9.79 -39.56 -0.39 -1.57 16 19 C -0.10 -1.28 6.22 -39.52 -0.25 -1.52 16 20 Br -0.07 -0.77 33.70 -68.01 -2.29 -3.06 16 21 C -0.09 -1.19 9.79 -39.56 -0.39 -1.57 16 22 C -0.11 -1.52 8.30 -39.59 -0.33 -1.85 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.99 7.56 -51.93 -0.39 0.59 16 25 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 26 H 0.03 0.77 6.28 -51.93 -0.33 0.44 16 27 H 0.09 2.37 6.00 -51.93 -0.31 2.06 16 28 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.03 0.60 6.31 -51.93 -0.33 0.28 16 30 H 0.06 1.20 6.17 -51.93 -0.32 0.88 16 31 H 0.04 0.69 6.40 -51.93 -0.33 0.36 16 32 H 0.05 0.85 7.42 -51.93 -0.39 0.47 16 33 H 0.08 1.42 7.71 -51.93 -0.40 1.02 16 34 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 35 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 37 H 0.13 1.65 7.91 -52.49 -0.42 1.24 16 LS Contribution 315.63 15.07 4.76 4.76 Total: -1.00 -26.16 315.63 -10.05 -36.21 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -5.18 Total: 0.83 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -2.01 Total: -19.29 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: -0.31 Total: -34.96 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 35 Polarization: -0.77 SS G_CDS: -2.29 Total: -3.06 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -26.16 -10.05 -36.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042439968.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.116 kcal (2) G-P(sol) polarization free energy of solvation -26.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds