Wall clock time and date at job start Tue Mar 31 2020 10:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46911 * 2 1 4 4 H 1.09003 * 109.47661 * 56.88495 * 3 2 1 5 5 C 1.50707 * 109.46931 * 176.88177 * 3 2 1 6 6 H 1.08006 * 119.99878 * 119.99513 * 5 3 2 7 7 C 1.37873 * 120.00268 * 299.99639 * 5 3 2 8 8 N 1.31516 * 119.99706 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00498 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46634 * 90.00008 * 9 7 5 11 11 H 1.48495 * 109.47415 * 210.00282 * 9 7 5 12 12 H 1.48500 * 109.46697 * 330.00417 * 9 7 5 13 13 N 1.46900 * 109.47095 * 296.87784 * 3 2 1 14 14 C 1.46897 * 111.00022 * 295.66094 * 13 3 2 15 15 C 1.46906 * 110.99981 * 171.70289 * 13 3 2 16 16 C 1.50700 * 109.46966 * 199.38951 * 15 13 3 17 17 C 1.38241 * 120.00420 * 259.98124 * 16 15 13 18 18 C 1.38218 * 120.01334 * 180.02562 * 17 16 15 19 19 C 1.38269 * 120.01566 * 359.97438 * 18 17 16 20 20 C 1.38197 * 120.01098 * 0.02562 * 19 18 17 21 21 C 1.38295 * 120.00694 * 80.00252 * 16 15 13 22 22 Br 1.89100 * 120.00843 * 359.97438 * 21 16 15 23 23 H 1.08994 * 109.46975 * 55.44361 * 1 2 3 24 24 H 1.08995 * 109.46866 * 175.44892 * 1 2 3 25 25 H 1.09006 * 109.47030 * 295.44166 * 1 2 3 26 26 H 1.08996 * 109.46960 * 239.99792 * 2 1 3 27 27 H 1.09004 * 109.47255 * 119.99428 * 2 1 3 28 28 H 0.97002 * 120.00504 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.47115 * 296.03771 * 14 13 3 30 30 H 1.08996 * 109.47127 * 56.04575 * 14 13 3 31 31 H 1.09002 * 109.46750 * 176.04567 * 14 13 3 32 32 H 1.09004 * 109.46846 * 79.38838 * 15 13 3 33 33 H 1.09000 * 109.47029 * 319.39048 * 15 13 3 34 34 H 1.08001 * 119.99546 * 0.02562 * 17 16 15 35 35 H 1.07995 * 119.99306 * 180.27508 * 18 17 16 36 36 H 1.08002 * 119.99215 * 180.02562 * 19 18 17 37 37 H 1.07998 * 120.00323 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6318 1.9723 0.8607 5 6 3.5450 1.4432 0.0773 6 1 4.1261 1.8963 -0.7124 7 6 4.1802 0.8654 1.1560 8 7 3.4727 0.3132 2.1173 9 14 6.0458 0.8656 1.2515 10 1 6.5052 2.0909 1.9535 11 1 6.5034 -0.3337 1.9980 12 1 6.6116 0.8400 -0.1212 13 7 1.6128 2.1128 -1.2354 14 6 2.2283 1.4875 -2.4135 15 6 1.9126 3.5501 -1.1851 16 6 1.0691 4.2750 -2.2020 17 6 1.6145 4.6400 -3.4187 18 6 0.8412 5.3053 -4.3514 19 6 -0.4784 5.6056 -4.0680 20 6 -1.0245 5.2411 -2.8520 21 6 -0.2506 4.5756 -1.9181 22 35 -0.9973 4.0765 -0.2540 23 1 -0.3633 0.5829 -0.8463 24 1 -0.3633 -1.0244 -0.0815 25 1 -0.3633 0.4415 0.9281 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 3.9195 -0.0936 2.8761 29 1 3.3097 1.6178 -2.3707 30 1 1.9906 0.4239 -2.4261 31 1 1.8413 1.9571 -3.3179 32 1 2.9676 3.7092 -1.4083 33 1 1.6901 3.9330 -0.1892 34 1 2.6451 4.4052 -3.6406 35 1 1.2664 5.5863 -5.3035 36 1 -1.0824 6.1251 -4.7972 37 1 -2.0553 5.4754 -2.6309 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042441079.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:56 Heat of formation + Delta-G solvation = 28.270222 kcal Electronic energy + Delta-G solvation = -18565.860371 eV Core-core repulsion = 15775.240440 eV Total energy + Delta-G solvation = -2790.619931 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.27986 -37.00422 -33.24553 -32.03690 -31.57177 -30.42707 -28.90991 -26.74840 -26.29764 -23.89627 -22.30901 -22.18874 -20.49926 -18.91321 -16.58693 -16.27493 -15.30528 -15.24132 -14.95544 -14.30016 -13.51425 -13.43833 -13.25341 -12.99035 -12.65754 -12.29688 -12.05992 -11.61008 -11.23182 -11.16516 -11.00992 -10.84867 -10.75028 -10.64683 -10.48754 -10.44630 -9.99553 -9.62349 -9.58927 -9.42417 -9.02769 -8.69822 -8.35989 -8.33221 -7.10351 -5.96631 -4.10122 1.31469 1.46325 2.07583 3.26690 3.34357 3.36437 3.79048 4.40401 4.92460 4.99820 5.05335 5.27723 5.36244 5.43926 5.59923 5.83243 5.97403 6.12107 6.22528 6.37759 6.40972 6.50672 6.53747 6.55313 6.61873 6.73814 6.77117 6.81795 6.98903 7.19563 7.27319 7.40030 7.65054 7.79911 8.00912 8.18622 8.32844 8.50467 9.00132 9.57327 11.02341 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.018165 B = 0.005787 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.045199 B = 4837.434774 C = 5569.312105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C 0.217 3.783 4 H 0.041 0.959 5 C -0.544 4.544 6 H 0.055 0.945 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.522 5.522 14 C 0.032 3.968 15 C 0.092 3.908 16 C -0.033 4.033 17 C -0.113 4.113 18 C -0.111 4.111 19 C -0.129 4.129 20 C -0.098 4.098 21 C -0.071 4.071 22 Br -0.040 7.040 23 H 0.052 0.948 24 H 0.022 0.978 25 H 0.036 0.964 26 H 0.032 0.968 27 H 0.090 0.910 28 H 0.261 0.739 29 H 0.029 0.971 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.652 9.181 -9.204 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C 0.111 3.889 4 H 0.059 0.941 5 C -0.583 4.583 6 H 0.074 0.926 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.245 5.245 14 C -0.117 4.117 15 C -0.037 4.037 16 C -0.035 4.035 17 C -0.132 4.132 18 C -0.129 4.129 19 C -0.148 4.148 20 C -0.118 4.118 21 C -0.152 4.152 22 Br 0.046 6.954 23 H 0.071 0.929 24 H 0.041 0.959 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.109 0.891 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.424 8.814 -8.406 15.400 hybrid contribution 2.179 0.119 -0.256 2.198 sum -7.245 8.933 -8.662 14.398 Atomic orbital electron populations 1.21706 0.98778 0.98263 1.00761 1.21587 0.92278 0.99079 1.01826 1.19287 0.92496 0.91044 0.86034 0.94138 1.21770 0.92865 1.37629 1.06076 0.92645 1.24891 0.97733 0.95071 0.95618 1.69877 1.34855 1.37785 1.09737 0.86713 0.86451 0.77520 0.78002 1.20773 1.21223 1.20132 1.62416 1.57655 0.99692 1.04775 1.22238 0.97338 0.99562 0.92529 1.20988 0.95506 0.90506 0.96678 1.20139 0.92858 0.94941 0.95588 1.21109 1.00251 0.98827 0.93015 1.21175 0.94239 0.98334 0.99168 1.21020 0.95612 1.01498 0.96635 1.21062 0.99493 0.97995 0.93264 1.21740 0.95600 1.03597 0.94226 1.96711 1.82921 1.91791 1.24006 0.92895 0.95909 0.94433 0.94960 0.89129 0.92936 0.95263 0.91987 0.94357 0.93792 0.89776 0.85677 0.86044 0.85887 0.85612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.84 37.16 0.37 -2.48 16 2 C -0.11 -2.58 5.08 -26.73 -0.14 -2.71 16 3 C 0.22 5.21 1.71 -68.86 -0.12 5.10 16 4 H 0.04 1.09 7.87 -51.93 -0.41 0.68 16 5 C -0.54 -14.22 7.33 -34.44 -0.25 -14.47 16 6 H 0.06 1.45 5.94 -52.48 -0.31 1.14 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 8 N -0.88 -24.63 11.30 55.43 0.63 -24.01 16 9 Si 0.88 20.94 29.54 -169.99 -5.02 15.92 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.52 -10.69 3.94 -237.72 -0.94 -11.63 16 14 C 0.03 0.62 8.73 60.06 0.52 1.15 16 15 C 0.09 1.74 3.94 -4.97 -0.02 1.72 16 16 C -0.03 -0.53 4.91 -104.60 -0.51 -1.05 16 17 C -0.11 -1.58 8.94 -39.59 -0.35 -1.93 16 18 C -0.11 -1.30 10.05 -39.58 -0.40 -1.70 16 19 C -0.13 -1.47 10.05 -39.59 -0.40 -1.87 16 20 C -0.10 -1.28 9.79 -39.56 -0.39 -1.66 16 21 C -0.07 -1.11 6.22 -39.52 -0.25 -1.36 16 22 Br -0.04 -0.65 32.01 -68.01 -2.18 -2.83 16 23 H 0.05 1.07 7.57 -51.93 -0.39 0.68 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.75 6.28 -51.93 -0.33 0.42 16 27 H 0.09 2.40 5.99 -51.93 -0.31 2.08 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.03 0.60 6.31 -51.93 -0.33 0.27 16 30 H 0.06 1.23 6.17 -51.93 -0.32 0.91 16 31 H 0.04 0.66 7.02 -51.93 -0.36 0.30 16 32 H 0.04 0.86 7.34 -51.93 -0.38 0.48 16 33 H 0.08 1.71 6.77 -51.93 -0.35 1.35 16 34 H 0.13 1.64 8.04 -52.49 -0.42 1.22 16 35 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 314.06 15.07 4.73 4.73 Total: -1.00 -27.24 314.06 -9.97 -37.20 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -5.17 Total: 0.10 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -2.03 Total: -19.49 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: -0.31 Total: -35.64 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 35 Polarization: -0.65 SS G_CDS: -2.18 Total: -2.83 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.24 -9.97 -37.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042441079.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.475 kcal (2) G-P(sol) polarization free energy of solvation -27.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds