Wall clock time and date at job start Tue Mar 31 2020 10:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47057 * 2 1 4 4 N 1.46901 * 109.47398 * 120.00217 * 2 1 3 5 5 C 1.46897 * 111.00072 * 168.46744 * 4 2 1 6 6 C 1.50696 * 109.47420 * 293.95490 * 5 4 2 7 7 H 1.08001 * 119.99766 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00242 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99841 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99900 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46863 * 89.99826 * 10 8 6 12 12 H 1.48500 * 109.46811 * 209.99400 * 10 8 6 13 13 H 1.48492 * 109.47364 * 329.99761 * 10 8 6 14 14 C 1.46905 * 110.99920 * 292.42435 * 4 2 1 15 15 C 1.50697 * 109.46939 * 163.56911 * 14 4 2 16 16 C 1.38235 * 120.00063 * 104.91039 * 15 14 4 17 17 C 1.38221 * 120.00843 * 179.97438 * 16 15 14 18 18 C 1.38257 * 120.02111 * 0.02562 * 17 16 15 19 19 C 1.38201 * 120.01021 * 359.97417 * 18 17 16 20 20 C 1.38298 * 120.00849 * 284.63319 * 15 14 4 21 21 Br 1.89101 * 120.00863 * 0.02833 * 20 15 14 22 22 H 1.08995 * 109.46722 * 303.51018 * 1 2 3 23 23 H 1.08998 * 109.47001 * 63.50503 * 1 2 3 24 24 H 1.09001 * 109.46973 * 183.51248 * 1 2 3 25 25 H 1.09000 * 109.47005 * 240.00218 * 2 1 3 26 26 H 1.09001 * 109.47204 * 182.06299 * 3 2 1 27 27 H 1.08998 * 109.47661 * 302.06570 * 3 2 1 28 28 H 1.08998 * 109.47043 * 62.07166 * 3 2 1 29 29 H 1.09005 * 109.47051 * 53.95575 * 5 4 2 30 30 H 1.09006 * 109.47039 * 173.95448 * 5 4 2 31 31 H 0.97000 * 119.99894 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.46773 * 283.57402 * 14 4 2 33 33 H 1.08998 * 109.46906 * 43.56986 * 14 4 2 34 34 H 1.07997 * 120.00265 * 0.02562 * 16 15 14 35 35 H 1.08004 * 119.99331 * 180.02562 * 17 16 15 36 36 H 1.08000 * 119.99722 * 179.97438 * 18 17 16 37 37 H 1.08000 * 120.00941 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 3.4621 -0.9542 1.1042 6 6 3.7221 -1.9368 -0.0084 7 1 2.8983 -2.3275 -0.5872 8 6 5.0116 -2.3369 -0.2874 9 7 6.0149 -1.8608 0.4171 10 14 5.3338 -3.5555 -1.6661 11 1 5.5520 -2.8188 -2.9369 12 1 6.5415 -4.3578 -1.3454 13 1 4.1640 -4.4585 -1.8121 14 6 1.7020 0.0700 2.4142 15 6 1.8429 -0.8237 3.6194 16 6 2.9377 -0.6923 4.4531 17 6 3.0669 -1.5115 5.5588 18 6 2.1015 -2.4630 5.8313 19 6 1.0066 -2.5951 4.9984 20 6 0.8741 -1.7714 3.8947 21 35 -0.6273 -1.9469 2.7585 22 1 -0.3632 0.5673 0.8568 23 1 -0.3633 0.4585 -0.9197 24 1 -0.3633 -1.0257 0.0630 25 1 1.8933 -0.5138 -0.8900 26 1 3.1294 1.4427 -0.0370 27 1 1.6468 1.9670 -0.8708 28 1 1.7073 1.9455 0.9080 29 1 3.9875 -0.0221 0.8959 30 1 3.8190 -1.3696 2.0467 31 1 6.9222 -2.1420 0.2206 32 1 2.3879 0.9123 2.5042 33 1 0.6785 0.4397 2.3537 34 1 3.6919 0.0510 4.2410 35 1 3.9221 -1.4084 6.2103 36 1 2.2030 -3.1032 6.6952 37 1 0.2523 -3.3381 5.2114 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044414975.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:15 Heat of formation + Delta-G solvation = 27.780024 kcal Electronic energy + Delta-G solvation = -18627.084787 eV Core-core repulsion = 15836.443600 eV Total energy + Delta-G solvation = -2790.641188 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 311.058 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.25358 -37.35685 -32.75020 -32.40474 -31.72771 -30.02232 -28.84000 -27.10135 -26.52547 -24.54020 -22.31838 -21.91529 -21.04744 -18.68282 -16.45506 -16.19092 -15.42698 -15.15414 -14.58417 -14.49887 -13.96670 -13.34019 -13.20174 -13.09715 -12.52958 -12.48440 -12.25516 -12.01747 -11.41598 -11.28987 -11.00611 -10.98514 -10.72661 -10.69002 -10.54691 -10.40270 -10.38132 -9.96533 -9.75280 -9.50184 -9.10288 -8.53586 -8.37765 -8.24301 -7.11404 -5.98119 -3.97569 1.46240 1.60905 2.12136 3.33831 3.40269 3.45257 3.92520 4.47234 4.95130 5.11585 5.13029 5.31682 5.38516 5.54377 5.60648 5.69106 5.80420 5.88225 5.94739 6.06768 6.12919 6.17176 6.23866 6.33332 6.40302 6.50257 6.59951 6.67646 6.78623 6.87914 6.95058 7.12671 7.39829 7.45763 7.86440 8.16715 8.29789 8.61652 9.10003 9.65790 11.12764 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.013778 B = 0.006557 C = 0.005644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.712510 B = 4269.109048 C = 4959.749127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.084 3.916 3 C -0.181 4.181 4 N -0.515 5.515 5 C 0.191 3.809 6 C -0.500 4.500 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.893 3.107 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.081 3.919 15 C -0.032 4.032 16 C -0.103 4.103 17 C -0.108 4.108 18 C -0.125 4.125 19 C -0.100 4.100 20 C -0.066 4.066 21 Br -0.048 7.048 22 H 0.046 0.954 23 H 0.044 0.956 24 H 0.061 0.939 25 H 0.093 0.907 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.045 0.955 29 H -0.007 1.007 30 H 0.031 0.969 31 H 0.259 0.741 32 H 0.036 0.964 33 H 0.080 0.920 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.863 2.930 8.658 14.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 C -0.240 4.240 4 N -0.238 5.238 5 C 0.066 3.934 6 C -0.539 4.539 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.721 3.279 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.047 4.047 15 C -0.035 4.035 16 C -0.122 4.122 17 C -0.126 4.126 18 C -0.144 4.144 19 C -0.120 4.120 20 C -0.146 4.146 21 Br 0.038 6.962 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.080 0.920 25 H 0.111 0.889 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.011 0.989 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.480 2.392 8.257 15.154 hybrid contribution 1.294 0.068 -0.519 1.396 sum -11.185 2.460 7.738 13.822 Atomic orbital electron populations 1.21916 0.96154 1.01926 0.99832 1.21566 0.93751 0.91765 0.95384 1.22455 1.02310 0.98732 1.00532 1.62322 1.19758 1.43084 0.98655 1.19779 0.80515 0.95344 0.97806 1.21150 0.92176 1.24776 1.15782 0.91955 1.24946 0.96220 0.96681 0.96689 1.69954 0.99111 1.44536 1.40315 0.86575 0.77732 0.81368 0.82234 1.20850 1.21385 1.19798 1.21137 1.00952 0.93245 0.89379 1.19815 0.92691 0.95411 0.95535 1.21100 0.96794 0.99993 0.94363 1.21173 0.98574 0.95521 0.97333 1.21017 0.94478 0.99089 0.99854 1.21012 0.98626 0.98380 0.93938 1.21578 0.95978 1.00556 0.96483 1.96599 1.36311 1.97474 1.65865 0.93530 0.93698 0.91970 0.88899 0.92048 0.93331 0.93560 0.98946 0.95048 0.93121 0.94568 0.90206 0.85568 0.85911 0.85852 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.63 37.16 0.32 -1.91 16 2 C 0.08 1.59 2.77 -67.71 -0.19 1.40 16 3 C -0.18 -3.13 8.51 37.16 0.32 -2.81 16 4 N -0.51 -10.68 4.15 -229.52 -0.95 -11.64 16 5 C 0.19 4.82 4.46 -4.98 -0.02 4.80 16 6 C -0.50 -13.91 8.35 -34.44 -0.29 -14.20 16 7 H 0.06 1.74 7.20 -52.49 -0.38 1.36 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.58 13.29 55.43 0.74 -25.85 16 10 Si 0.89 21.86 29.54 -169.99 -5.02 16.83 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.08 1.45 3.03 -4.97 -0.02 1.44 16 15 C -0.03 -0.57 4.70 -104.60 -0.49 -1.06 16 16 C -0.10 -1.71 8.91 -39.59 -0.35 -2.06 16 17 C -0.11 -1.55 10.05 -39.58 -0.40 -1.95 16 18 C -0.13 -1.70 10.05 -39.59 -0.40 -2.10 16 19 C -0.10 -1.46 9.79 -39.56 -0.39 -1.85 16 20 C -0.07 -1.10 6.22 -39.52 -0.25 -1.35 16 21 Br -0.05 -0.75 30.68 -68.01 -2.09 -2.84 16 22 H 0.05 0.69 6.48 -51.93 -0.34 0.35 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.06 1.03 7.36 -51.93 -0.38 0.65 16 25 H 0.09 1.98 6.63 -51.93 -0.34 1.64 16 26 H 0.06 1.20 6.72 -51.93 -0.35 0.85 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.73 6.56 -51.93 -0.34 0.39 16 29 H -0.01 -0.19 6.52 -51.93 -0.34 -0.53 16 30 H 0.03 0.86 6.68 -51.93 -0.35 0.52 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.04 0.65 6.93 -51.93 -0.36 0.29 16 33 H 0.08 1.32 5.32 -51.93 -0.28 1.05 16 34 H 0.13 2.03 8.00 -52.49 -0.42 1.61 16 35 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 36 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 37 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 313.06 15.07 4.72 4.72 Total: -1.00 -29.50 313.06 -9.97 -39.47 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.12 Total: -0.53 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -2.25 Total: -20.18 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: -0.22 Total: -37.48 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 35 Polarization: -0.75 SS G_CDS: -2.09 Total: -2.84 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.50 -9.97 -39.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044414975.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.254 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds