Wall clock time and date at job start Tue Mar 31 2020 09:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34647 * 117.00564 * 2 1 4 4 O 1.21521 * 119.99971 * 359.97438 * 3 2 1 5 5 N 1.34775 * 120.00448 * 179.97438 * 3 2 1 6 6 C 1.40097 * 120.00383 * 175.41845 * 5 3 2 7 7 C 1.38850 * 120.01507 * 215.09898 * 6 5 3 8 8 C 1.38073 * 119.98792 * 180.02562 * 7 6 5 9 9 C 1.38736 * 120.01092 * 0.02562 * 8 7 6 10 10 O 1.35978 * 119.98255 * 179.97438 * 9 8 7 11 11 C 1.34246 * 117.00030 * 75.14332 * 10 9 8 12 12 O 1.20824 * 119.99743 * 355.00670 * 11 10 9 13 13 C 1.50701 * 119.99821 * 175.00362 * 11 10 9 14 14 S 1.80999 * 109.47060 * 180.02562 * 13 11 10 15 15 C 1.76196 * 100.00244 * 180.02562 * 14 13 11 16 16 H 1.08003 * 119.99653 * 359.97438 * 15 14 13 17 17 C 1.38797 * 120.00005 * 179.97438 * 15 14 13 18 18 N 1.31631 * 120.00018 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00199 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47330 * 90.00002 * 19 17 15 21 21 H 1.48501 * 109.47167 * 210.00003 * 19 17 15 22 22 H 1.48496 * 109.47141 * 330.00032 * 19 17 15 23 23 C 1.38732 * 120.02993 * 0.24889 * 9 8 7 24 24 C 1.38072 * 120.01183 * 359.45347 * 23 9 8 25 25 H 1.08993 * 109.47603 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47246 * 300.00719 * 1 2 3 27 27 H 1.09006 * 109.46967 * 60.00309 * 1 2 3 28 28 H 0.97003 * 119.99833 * 355.41886 * 5 3 2 29 29 H 1.08008 * 120.00554 * 0.02562 * 7 6 5 30 30 H 1.07993 * 119.99624 * 179.97438 * 8 7 6 31 31 H 1.09005 * 109.47184 * 299.99656 * 13 11 10 32 32 H 1.09000 * 109.47121 * 60.00064 * 13 11 10 33 33 H 0.97001 * 120.00148 * 180.02562 * 18 17 15 34 34 H 1.07993 * 119.98984 * 179.73247 * 23 9 8 35 35 H 1.08002 * 120.01126 * 180.25559 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1997 0.0000 4 8 1.4016 2.2189 -0.0005 5 7 3.4093 1.2702 0.0005 6 6 4.0457 2.5145 -0.0964 7 6 5.2406 2.6310 -0.7938 8 6 5.8676 3.8576 -0.8885 9 6 5.3041 4.9733 -0.2865 10 8 5.9223 6.1808 -0.3797 11 6 5.8358 6.8206 -1.5568 12 8 5.3070 6.2814 -2.4999 13 6 6.3982 8.2112 -1.7016 14 16 6.1281 8.7981 -3.3923 15 6 6.8615 10.3964 -3.2823 16 1 7.2963 10.7280 -2.3509 17 6 6.8804 11.2292 -4.3924 18 7 7.4279 12.4235 -4.3101 19 14 6.1290 10.6554 -6.0035 20 1 4.6960 11.0425 -6.0470 21 1 6.8475 11.2889 -7.1382 22 1 6.2461 9.1786 -6.1060 23 6 4.1131 4.8564 0.4152 24 6 3.4820 3.6316 0.5055 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 3.9374 0.4593 0.0680 29 1 5.6796 1.7624 -1.2621 30 1 6.7972 3.9483 -1.4305 31 1 5.8983 8.8801 -1.0010 32 1 7.4671 8.1948 -1.4887 33 1 7.4408 13.0057 -5.0858 34 1 3.6772 5.7244 0.8872 35 1 2.5527 3.5415 1.0483 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048793563.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:35:37 Heat of formation + Delta-G solvation = -117.738991 kcal Electronic energy + Delta-G solvation = -21885.158247 eV Core-core repulsion = 18168.845179 eV Total energy + Delta-G solvation = -3716.313068 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.071 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.41648 -40.93845 -39.04498 -37.19855 -36.42128 -34.93853 -32.51000 -31.28978 -30.46518 -29.15160 -27.65965 -25.70863 -23.93554 -23.21088 -22.00690 -20.86842 -19.39375 -18.22168 -18.06714 -17.86041 -17.06954 -16.70498 -16.43973 -16.30084 -15.08563 -14.86715 -14.71836 -14.53850 -14.21357 -14.04589 -13.68191 -13.62625 -13.10241 -12.87314 -12.71766 -12.59154 -12.54498 -11.82778 -11.37444 -11.26617 -11.07415 -11.06129 -11.04424 -10.77309 -10.40376 -10.29870 -9.89859 -9.21665 -9.07183 -8.65199 -8.38325 -7.05306 -6.35119 -4.09979 0.76535 1.13269 1.62240 2.24757 2.36835 2.52129 3.07902 3.28619 3.44279 3.46211 3.61185 3.71825 4.26443 4.56444 4.62290 4.68814 4.70979 4.78693 4.91132 5.02330 5.03620 5.10758 5.21023 5.23572 5.59816 5.66842 5.76983 5.83247 5.90534 5.97001 6.10045 6.17754 6.45495 6.79573 6.83608 7.78256 7.87625 8.02750 8.36341 9.09767 10.73784 Molecular weight = 311.07amu Principal moments of inertia in cm(-1) A = 0.028460 B = 0.002459 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.614426 B =11383.184656 C =11847.987697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.369 6.369 3 C 0.647 3.353 4 O -0.550 6.550 5 N -0.648 5.648 6 C 0.150 3.850 7 C -0.123 4.123 8 C -0.099 4.099 9 C 0.082 3.918 10 O -0.296 6.296 11 C 0.474 3.526 12 O -0.470 6.470 13 C -0.098 4.098 14 S -0.138 6.138 15 C -0.523 4.523 16 H 0.092 0.908 17 C 0.098 3.902 18 N -0.876 5.876 19 Si 0.856 3.144 20 H -0.266 1.266 21 H -0.272 1.272 22 H -0.236 1.236 23 C -0.099 4.099 24 C -0.105 4.105 25 H 0.105 0.895 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.418 0.582 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.272 0.728 34 H 0.138 0.862 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.246 -25.604 11.595 29.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.283 6.283 3 C 0.400 3.600 4 O -0.437 6.437 5 N -0.300 5.300 6 C 0.057 3.943 7 C -0.143 4.143 8 C -0.118 4.118 9 C 0.039 3.961 10 O -0.213 6.213 11 C 0.316 3.684 12 O -0.352 6.352 13 C -0.245 4.245 14 S 0.089 5.911 15 C -0.670 4.670 16 H 0.110 0.890 17 C -0.112 4.112 18 N -0.512 5.512 19 Si 0.680 3.320 20 H -0.191 1.191 21 H -0.198 1.198 22 H -0.160 1.160 23 C -0.118 4.118 24 C -0.125 4.125 25 H 0.124 0.876 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.255 0.745 29 H 0.153 0.847 30 H 0.154 0.846 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.082 0.918 34 H 0.156 0.844 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.314 -25.713 10.301 29.224 hybrid contribution 0.447 0.239 0.266 0.573 sum -8.867 -25.474 10.568 28.969 Atomic orbital electron populations 1.23287 0.73622 1.03823 1.03160 1.86236 1.24772 1.30468 1.86803 1.18104 0.83067 0.82547 0.76244 1.91046 1.64339 1.34513 1.53779 1.41901 1.03517 1.09137 1.75462 1.17480 0.93762 0.84247 0.98809 1.20686 0.95746 0.98218 0.99689 1.21136 1.00568 0.91438 0.98663 1.18593 0.93220 0.83916 1.00332 1.84673 1.68391 1.30234 1.37967 1.23744 0.76845 0.87932 0.79872 1.90706 1.39304 1.66393 1.38825 1.23031 1.05237 0.90692 1.05575 1.84857 1.79155 1.20396 1.06735 1.22251 1.44170 0.98094 1.02531 0.88955 1.24691 0.93886 0.93936 0.98664 1.69929 1.42361 1.07660 1.31236 0.86754 0.80243 0.81847 0.83109 1.19101 1.19759 1.15964 1.21086 0.92525 0.98486 0.99749 1.21116 1.00841 0.90967 0.99530 0.87632 0.91525 0.91471 0.74497 0.84680 0.84569 0.86852 0.86820 0.91785 0.84386 0.83452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.31 10.56 101.05 1.07 1.38 16 2 O -0.37 -3.03 10.62 -40.34 -0.43 -3.46 16 3 C 0.65 6.73 8.59 54.05 0.46 7.19 16 4 O -0.55 -7.45 13.57 -19.29 -0.26 -7.71 16 5 N -0.65 -5.55 5.35 -14.24 -0.08 -5.62 16 6 C 0.15 1.61 6.30 -83.63 -0.53 1.09 16 7 C -0.12 -1.25 9.96 -39.42 -0.39 -1.65 16 8 C -0.10 -1.24 9.45 -39.46 -0.37 -1.61 16 9 C 0.08 1.17 5.19 -39.21 -0.20 0.97 16 10 O -0.30 -4.67 10.03 -23.74 -0.24 -4.91 16 11 C 0.47 8.69 7.84 36.01 0.28 8.97 16 12 O -0.47 -9.88 15.29 -18.75 -0.29 -10.17 16 13 C -0.10 -1.87 6.27 36.01 0.23 -1.64 16 14 S -0.14 -3.39 18.55 -107.50 -1.99 -5.38 16 15 C -0.52 -14.71 10.04 30.94 0.31 -14.40 16 16 H 0.09 2.70 8.03 -52.48 -0.42 2.28 16 17 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 18 N -0.88 -25.97 13.97 55.49 0.78 -25.19 16 19 Si 0.86 21.32 27.74 -169.99 -4.71 16.60 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 23 C -0.10 -1.29 9.98 -39.46 -0.39 -1.68 16 24 C -0.10 -1.27 8.69 -39.41 -0.34 -1.61 16 25 H 0.11 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.42 2.13 8.93 -40.82 -0.36 1.77 16 29 H 0.14 0.96 8.06 -52.48 -0.42 0.53 16 30 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 31 H 0.11 2.01 8.14 -51.91 -0.42 1.59 16 32 H 0.11 2.00 8.14 -51.92 -0.42 1.58 16 33 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.15 1.79 6.22 -52.49 -0.33 1.47 16 LS Contribution 330.79 15.07 4.99 4.99 Total: -1.00 -34.57 330.79 -5.87 -40.43 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -3.65 Total: 0.73 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 0.02 Total: -0.30 kcal Atomic # 7 Polarization: -31.51 SS G_CDS: 0.70 Total: -30.81 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -1.21 Total: -26.25 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.71 Total: 16.60 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -1.99 Total: -5.38 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.57 -5.87 -40.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048793563.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.305 kcal (2) G-P(sol) polarization free energy of solvation -34.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds