Wall clock time and date at job start Tue Mar 31 2020 10:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46884 * 2 1 4 4 N 1.46502 * 109.46765 * 179.97438 * 3 2 1 5 5 C 1.36899 * 120.00534 * 264.73953 * 4 3 2 6 6 H 1.07996 * 120.00374 * 138.46024 * 5 4 3 7 7 C 1.39028 * 119.99411 * 318.46062 * 5 4 3 8 8 N 1.31388 * 119.99540 * 161.28275 * 7 5 4 9 9 Si 1.86790 * 120.00419 * 341.28379 * 7 5 4 10 10 H 1.48507 * 109.47404 * 93.83608 * 9 7 5 11 11 H 1.48500 * 109.47405 * 213.83334 * 9 7 5 12 12 H 1.48496 * 109.47157 * 333.83456 * 9 7 5 13 13 C 1.34778 * 119.99641 * 84.73958 * 4 3 2 14 14 O 1.21619 * 120.00107 * 5.19690 * 13 4 3 15 15 C 1.47494 * 119.99965 * 185.19367 * 13 4 3 16 16 C 1.39803 * 120.08645 * 322.98994 * 15 13 4 17 17 C 1.38107 * 119.92589 * 180.22858 * 16 15 13 18 18 C 1.39558 * 119.99228 * 359.47363 * 17 16 15 19 19 C 1.38932 * 120.06317 * 0.54985 * 18 17 16 20 20 Cl 1.73602 * 119.89626 * 179.72701 * 19 18 17 21 21 C 1.37881 * 120.20225 * 359.70253 * 19 18 17 22 22 O 1.36391 * 108.58504 * 180.33528 * 18 17 16 23 23 C 1.44308 * 105.41534 * 342.29723 * 22 18 17 24 24 O 1.36542 * 131.41318 * 179.74219 * 17 16 15 25 25 H 1.09003 * 109.47038 * 59.99705 * 1 2 3 26 26 H 1.09001 * 109.47340 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46967 * 299.99962 * 1 2 3 28 28 H 1.09000 * 109.46900 * 240.00818 * 2 1 3 29 29 H 1.08993 * 109.47141 * 120.00400 * 2 1 3 30 30 H 1.09008 * 109.47038 * 60.00609 * 3 2 1 31 31 H 1.08993 * 109.47558 * 300.00145 * 3 2 1 32 32 H 0.96997 * 119.99865 * 180.02562 * 8 7 5 33 33 H 1.07996 * 120.03998 * 359.94691 * 16 15 13 34 34 H 1.07999 * 120.01009 * 180.02562 * 21 19 18 35 35 H 1.08997 * 111.01058 * 269.01571 * 23 22 18 36 36 H 1.09002 * 110.41660 * 146.10022 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1891 1.5513 1.1814 6 1 5.0653 0.9445 1.3558 7 6 3.7558 2.4431 2.1560 8 7 4.1571 2.3033 3.3993 9 14 2.6033 3.8399 1.6980 10 1 1.1981 3.4180 1.9282 11 1 2.9071 5.0274 2.5363 12 1 2.7882 4.1847 0.2656 13 6 4.1793 1.3353 -1.1614 14 8 3.5754 1.3338 -2.2171 15 6 5.6497 1.2198 -1.1529 16 6 6.4034 1.9352 -0.2177 17 6 7.7804 1.8284 -0.2157 18 6 8.4170 0.9984 -1.1395 19 6 7.6677 0.2880 -2.0691 20 17 8.4646 -0.7377 -3.2209 21 6 6.2930 0.3947 -2.0792 22 8 9.7626 1.0623 -0.9263 23 6 9.9705 2.2560 -0.1426 24 8 8.7305 2.4122 0.5722 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 3.8545 2.9252 4.0794 33 1 5.9099 2.5742 0.4995 34 1 5.7136 -0.1592 -2.8029 35 1 10.1536 3.1179 -0.7842 36 1 10.7980 2.1150 0.5528 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048953432.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:34 Heat of formation + Delta-G solvation = -64.905345 kcal Electronic energy + Delta-G solvation = -23872.248909 eV Core-core repulsion = 20156.183174 eV Total energy + Delta-G solvation = -3716.065736 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.96026 -39.42547 -37.33648 -36.29713 -35.88759 -35.38979 -33.18653 -31.84095 -30.14769 -29.88669 -26.25742 -25.75299 -25.09985 -23.02890 -22.62885 -21.29117 -19.69108 -18.19132 -17.84159 -17.36992 -16.74554 -16.29216 -15.66936 -15.37740 -14.59891 -14.36693 -14.33069 -14.02417 -13.84135 -13.72580 -13.27750 -13.13139 -12.79218 -12.75242 -12.51876 -12.23303 -11.71774 -11.65740 -11.60605 -11.21878 -11.05907 -10.95790 -10.85684 -10.61271 -10.36026 -10.12897 -9.88684 -9.41727 -8.85132 -8.36694 -7.98141 -7.83737 -6.63322 -4.27560 1.07412 1.38789 2.19490 2.84277 2.95163 3.11326 3.19820 3.32549 3.55197 3.94995 4.01662 4.23613 4.71781 4.76623 4.79298 4.93981 5.30760 5.35485 5.48166 5.54866 5.56026 5.61955 5.80164 5.97062 5.99224 6.18825 6.25938 6.28715 6.37342 6.44631 6.52583 6.68038 6.78740 6.81018 7.20220 7.26569 7.88832 8.07378 8.73640 9.11783 9.45384 10.44631 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.015066 B = 0.005438 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.020405 B = 5147.886494 C = 6545.048439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.101 3.899 4 N -0.450 5.450 5 C -0.357 4.357 6 H 0.110 0.890 7 C 0.071 3.929 8 N -0.848 5.848 9 Si 0.872 3.128 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.258 1.258 13 C 0.523 3.477 14 O -0.585 6.585 15 C -0.074 4.074 16 C -0.037 4.037 17 C 0.028 3.972 18 C 0.044 3.956 19 C -0.033 4.033 20 Cl -0.065 7.065 21 C -0.062 4.062 22 O -0.302 6.302 23 C 0.211 3.789 24 O -0.299 6.299 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.279 0.721 33 H 0.177 0.823 34 H 0.150 0.850 35 H 0.083 0.917 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.348 -0.773 -5.534 7.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.022 4.022 4 N -0.169 5.169 5 C -0.484 4.484 6 H 0.128 0.872 7 C -0.139 4.139 8 N -0.481 5.481 9 Si 0.699 3.301 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.181 1.181 13 C 0.312 3.688 14 O -0.471 6.471 15 C -0.077 4.077 16 C -0.056 4.056 17 C -0.016 4.016 18 C -0.002 4.002 19 C -0.060 4.060 20 Cl -0.036 7.036 21 C -0.082 4.082 22 O -0.218 6.218 23 C 0.099 3.901 24 O -0.216 6.216 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.195 0.805 34 H 0.168 0.832 35 H 0.101 0.899 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.276 -0.817 -5.750 7.846 hybrid contribution -0.135 0.677 0.166 0.710 sum 5.141 -0.141 -5.583 7.591 Atomic orbital electron populations 1.21705 0.96165 1.01189 1.01457 1.21774 0.95015 0.97671 1.02602 1.21739 0.81897 0.96998 1.01529 1.43594 1.04267 1.63171 1.05843 1.19196 1.14019 1.23673 0.91497 0.87223 1.25374 0.96720 0.97194 0.94565 1.69723 1.42624 1.35514 1.00269 0.86979 0.80834 0.82172 0.80156 1.19687 1.21098 1.18138 1.17838 0.85780 0.81210 0.83933 1.90677 1.69408 1.56023 1.30947 1.19568 0.94566 0.98008 0.95602 1.21191 0.87959 0.98959 0.97484 1.19578 0.91613 0.98239 0.92212 1.19533 0.83190 1.00111 0.97354 1.19461 0.91427 1.00692 0.94450 1.98345 1.80174 1.66592 1.58473 1.20825 0.90283 0.98299 0.98819 1.87408 1.19829 1.44123 1.70481 1.25665 0.88419 0.86415 0.89588 1.87441 1.15971 1.76254 1.41901 0.92945 0.92932 0.92946 0.91898 0.91223 0.91104 0.91239 0.91102 0.80546 0.83233 0.89950 0.85291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.91 37.16 0.37 -1.81 16 2 C -0.13 -2.41 6.22 -26.73 -0.17 -2.57 16 3 C 0.10 2.10 3.97 -4.04 -0.02 2.09 16 4 N -0.45 -10.22 2.12 -116.01 -0.25 -10.46 16 5 C -0.36 -8.59 6.65 -15.00 -0.10 -8.69 16 6 H 0.11 2.81 6.56 -52.49 -0.34 2.47 16 7 C 0.07 1.73 5.30 -17.45 -0.09 1.64 16 8 N -0.85 -21.90 13.96 55.50 0.77 -21.12 16 9 Si 0.87 19.13 25.05 -169.99 -4.26 14.87 16 10 H -0.27 -5.70 6.68 56.52 0.38 -5.33 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 13 C 0.52 11.73 7.30 -12.49 -0.09 11.63 16 14 O -0.59 -13.97 16.50 5.26 0.09 -13.88 16 15 C -0.07 -1.49 5.43 -104.98 -0.57 -2.06 16 16 C -0.04 -0.74 7.76 -39.04 -0.30 -1.04 16 17 C 0.03 0.51 7.13 -39.14 -0.28 0.23 16 18 C 0.04 0.76 6.94 -38.83 -0.27 0.49 16 19 C -0.03 -0.56 6.32 -39.46 -0.25 -0.81 16 20 Cl -0.06 -0.95 28.95 -51.86 -1.50 -2.45 16 21 C -0.06 -1.11 9.38 -39.15 -0.37 -1.48 16 22 O -0.30 -4.65 11.42 -45.33 -0.52 -5.17 16 23 C 0.21 2.60 8.89 101.05 0.90 3.50 16 24 O -0.30 -5.03 11.41 -45.82 -0.52 -5.56 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.07 1.50 3.78 -51.92 -0.20 1.30 16 31 H 0.07 1.44 7.52 -51.93 -0.39 1.05 16 32 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 33 H 0.18 3.81 5.81 -52.49 -0.30 3.50 16 34 H 0.15 2.51 8.02 -52.49 -0.42 2.09 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 318.48 15.07 4.80 4.80 Total: -1.00 -27.52 318.48 -6.40 -33.92 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -3.78 Total: 3.94 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -1.24 Total: 1.11 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: 0.53 Total: -31.58 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.95 Total: -24.61 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.26 Total: 14.87 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.50 Total: -2.45 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.52 -6.40 -33.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048953432.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.986 kcal (2) G-P(sol) polarization free energy of solvation -27.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds